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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062986 ID=TCONS_00062986|Name=TCONS_00062986|organism=Clytia hemisphaerica|type=transcript|length=1264bp
ttttgcctgagaccgtcatatttgtccgaaaatcacaccaaagtgtccga
aaaaaaaattggaaacatcgtaatttcgatttctctaaagttgaagtttc
caaaaatgtataacaagtgcttctaacaaaacaatcgagcgattttacaa
aatgccctctactaaaattatttaaatgtaATTCATGCAAGGAGTAATAC
TATAAGGAGAAATCGTATGACTTCGCAGAATGCTTTTTATATTGTCTAAT
TTTAGACAAAGATGACGCGGTGTTTATTATTATCCAAAATGAAAATGCTG
ACGAAGCAAAACAGTGGTGTCGAGCACAAGGTCAACCAGACTCACAGTTC
ATTGAAAATCCGGAGAAAGAATTCCACAAAGAATTGAAAGCCAAATATGA
AAGAGCACGTTACGGGATGTCAGAAACGAAAAGCGACCAACCATTGGGGA
AGTTTGTTTGCAGAATTGACCCGTGGAGGTGTGTATATCCCATCGAAGAA
CTACAAAGGGAAAATATCGAGAAAGAAAGACATAGaattaacaaaatttt
gaaGGATGCCACTCATCCATTCTTTAAATCGTGAAATATTTTGGCATGTA
AATCTATATCGAATATAAACTTCATTAATCACACCTATTGGATTTGTGTT
TTTAGTACATGATATTTTTCTATGTCATTgcattaattaatttttcatag
tTAAGCCTTGGCCGGTGAATCGGTTTCGAAAGTAAGAAGGCTAAAATGAT
AGTGACTAGGAAGGTCCTAACAAGCTTGGGGCCGACGGGCCGGTATTTGA
AATTATGGTTACAATGGCTTGGAAGTGATCTAAATTTGATTTCTACGAAG
TTATTGTAATGAAATAAACAAAGCAATTAGGTGATAATCACcaaagaata
cacgtttttttttattagaacacctaaaatttggctgagcctggatgtgc
ttatttttttagcaattttcagtctgaaatgttcttagatgcgttcttaa
attttcagactactctaaattgacaatatcatgcaaaataaagagcactt
aaaattggtaaaatttggacaatatttgactcttgatttagaaaatccat
tcctaagtttgtttaaaactgcttgaaaagaggaaaaattgtagtttctt
gtcattttttccaaactgaggctgggcatgttcttacgatgttcttaatt
tttcgacgaatttcagcctcaatgttcttataaactgggttctaataaaa
gaaaaaacgtgtat Run BLAST on NCBI transcript from alignment at scaffold_375:394675..396258- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062986 ID=TCONS_00062986|Name=TCONS_00062986|organism=Clytia hemisphaerica|type=transcript|length=1584bp|location=Sequence derived from alignment at scaffold_375:394675..396258- (Clytia hemisphaerica)
TTTTGCCTGAGACCGTCATATTTGTCCGAAAATCACACCAAAGTGTCCGA
AAAAAAAATTGGAAACATCGTAATTTCGATTTCTCTAAAGTTGAAGTTTC
CAAAAATGTATAACAAGTGCTTCTAACAAAACAATCGAGCGATTTTACAA
AATGCCCTCTACTAAAATTATTTAAATGTAATTCATGCAAGGAGTAATAC
TATAAGGAGAAATCGTATGACTTCGCAGAATGCTTTTTATATTGTCTAAT
TTTAGACAAAGATGACGCGGTGTTTATTATTATCCAAAATGAAAATGCTG
ACGAAGCAAAACAGTGGTGTCGAGCACAAGGTCAACCAGACTCACAGTTC
ATTGAAAATCCGGAGAAAGAATTCCACAAAGAATTGAAAGCCAAATATGA
AAGGTTAAAGATTGTCGTTTGAATTTTTAAAGAAAAATAAACTATATGAA
GTGTTTGTCAGTTAAAGCCTCGCCCCGCGGGGTGTTAATCGAGGTGCACA
GGATAGTTTCTTTATTTTGCAAATTCGTTTACAATTTTATAAGCTCACTC
TTCTCTATGATTTGAGCAAAGAACCTGGTGAAGAGGGGGTCTGCTGGTGG
CCTGCTATCATAAGCCGTGCACTGTAAAACGTAAAAGGTAATTTCATTAG
TGGTAACTTGAATGGAAGCTAATGTTATTAATTTAGGTCTATGTATCTAA
AAATTAGATCTCTCATTTTACAGAGCACGTTACGGGATGTCAGAAACGAA
AAGCGACCAACCATTGGGGAAGTTTGTTTGCAGAATTGACCCGTGGAGGT
GTGTATATCCCATCGAAGAACTACAAAGGGAAAATATCGAGAAAGAAAGA
CATAGAATTAACAAAATTTTGAAGGATGCCACTCATCCATTCTTTAAATC
GTGAAATATTTTGGCATGTAAATCTATATCGAATATAAACTTCATTAATC
ACACCTATTGGATTTGTGTTTTTAGTACATGATATTTTTCTATGTCATTG
CATTAATTAATTTTTCATAGTTAAGCCTTGGCCGGTGAATCGGTTTCGAA
AGTAAGAAGGCTAAAATGATAGTGACTAGGAAGGTCCTAACAAGCTTGGG
GCCGACGGGCCGGTATTTGAAATTATGGTTACAATGGCTTGGAAGTGATC
TAAATTTGATTTCTACGAAGTTATTGTAATGAAATAAACAAAGCAATTAG
GTGATAATCACCAAAGAATACACGTTTTTTTTTATTAGAACACCTAAAAT
TTGGCTGAGCCTGGATGTGCTTATTTTTTTAGCAATTTTCAGTCTGAAAT
GTTCTTAGATGCGTTCTTAAATTTTCAGACTACTCTAAATTGACAATATC
ATGCAAAATAAAGAGCACTTAAAATTGGTAAAATTTGGACAATATTTGAC
TCTTGATTTAGAAAATCCATTCCTAAGTTTGTTTAAAACTGCTTGAAAAG
AGGAAAAATTGTAGTTTCTTGTCATTTTTTCCAAACTGAGGCTGGGCATG
TTCTTACGATGTTCTTAATTTTTCGACGAATTTCAGCCTCAATGTTCTTA
TAAACTGGGTTCTAATAAAAGAAAAAACGTGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062986-exon-scaffold_375-1575043694:395856..396258 | TCONS_00062986-exon-scaffold_375-1575043694:395856..396258 | Clytia hemisphaerica | exon |
| TCONS_00062986-exon-scaffold_375-1575043694:394675..395535 | TCONS_00062986-exon-scaffold_375-1575043694:394675..395535 | Clytia hemisphaerica | exon |
| TCONS_00062986-exon-scaffold_375-1510915933:395856..396258 | TCONS_00062986-exon-scaffold_375-1510915933:395856..396258 | Clytia hemisphaerica | exon |
| TCONS_00062986-exon-scaffold_375-1510915933:394675..395535 | TCONS_00062986-exon-scaffold_375-1510915933:394675..395535 | Clytia hemisphaerica | exon |
| TCONS_00062986-exon-scaffold_375-1491911889:395856..396258 | TCONS_00062986-exon-scaffold_375-1491911889:395856..396258 | Clytia hemisphaerica | exon |
| TCONS_00062986-exon-scaffold_375-1491911889:394675..395535 | TCONS_00062986-exon-scaffold_375-1491911889:394675..395535 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_375 | supercontig | scaffold_375:394675..396258 - |
Blast
The following BLAST results are available for this feature:
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