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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062988 ID=TCONS_00062988|Name=TCONS_00062988|organism=Clytia hemisphaerica|type=transcript|length=727bp
tagGAAGGGAGAGAGCCAGAAGAAATGcatcaaattcaaagaaaaaattg
AACATACCAgatttgaaagatcaaaatgcCATTCAACAATTTTTCCTTGC
TTCTGTTGAAGAAGGAGAAAGATATTTGGCCATGCAAGATTACGAAAACT
GTGTCAATAGCCTAACACAAGCCATCGCTGTATGTGGTCAACCTCAGCAA
TTANATTTGGCCATGCAAGATTACGAAAACTGTGTCAATAGCCTAACACA
AGCCATCGCTGTATGTGGTCAACCTCAGCAATTACTTCAAGTCTTCAGAA
CTACGCTACCTCCTCAAGTTTTCCAAATGTTGTTAGCAAACCTTGCAGCA
TTAGGTGAAAATCAACCTGCTGGTGCAAGTGGTATGAATGTTGCAAGTGG
AATGAGCGTTGGTGCTCCTATGGGTGTACCAGAAGTAAAAACAACAGATG
AAACTGACGTCCTCGATtaaaagaaagacaaaaaaatgtacaactcatcg
taaaaaaaaattgaaaaatcaaaatatgacaAAGACAGATTCTAAAACAG
CAAACAAGACAACATACTTAGTTTTTATAGATTTATTTGTATATAGATGC
TCttactttttctattttgatgtaCAGAAAGATGGCCAACACGCGCTTTA
GAGTAATCCATAATTATAatacaattttgaatttttttttaaatcgactC
TTCAAAAATATAACCTTGCCCCTTCAg Run BLAST on NCBI protein sequence of TCONS_00062988-protein >TCONS_00062988-protein ID=TCONS_00062988-protein|Name=TCONS_00062988-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
GRERARRNASNSKKKLNIPDLKDQNAIQQFFLASVEEGERYLAMQDYENC
VNSLTQAIAVCGQPQQLXLAMQDYENCVNSLTQAIAVCGQPQQLLQVFRT
TLPPQVFQMLLANLAALGENQPAGASGMNVASGMSVGAPMGVPEVKTTDE
TDVLD Run BLAST on NCBI transcript from alignment at scaffold_375:404169..407638- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062988 ID=TCONS_00062988|Name=TCONS_00062988|organism=Clytia hemisphaerica|type=transcript|length=3470bp|location=Sequence derived from alignment at scaffold_375:404169..407638- (Clytia hemisphaerica)
TAGGAAGGGAGAGAGCCAGAAGAAATGCATCAAATTCAAAGAAAAAATTG
GTGAGATTGATTACTTTTTTGTAAATATGTAATACAGTAATAGGAAATCG
CAAGAATTTAGTACTCTAAATGCTTGCCTGGATTTCTTGACTAACGAAAA
ACATTTAAAAAAGAAATTATTTCATAATTGTTTTATTGACATAAATAAAT
ACATTGGTCAGTTTCTCTACTACTAACCTATATAAAGCCTTAGAATGAGC
TATATCCCTATTATTTGAAAGTATTCTGTATTTCACAAAAAAATGGATGG
GGAGCAAACAATCCAAAACCAATTTTGATTTAAATATACAGCCCAAATAT
CTAGAAATCAACATTTCAGGTTCCAAATGAGGTGATAAATGCCCAAGCTA
ACTGAAAGATTTTGATGAAAACATGATCATACCAAAAGCAGGGTCAAGAA
AAAAATATAATATATTTATGATTTCTCCACATAAATTGAGAAAATCGAAT
TCTGTAAAATTTAAAAAAGGCAATCAAGACGTCATCAACATTACAAACCG
TTTTAACTTTTTATAAGTGAATTTTCAAATATTGGTTCTGACCTTTTTCT
ATATGTTCAATAATATCATAGCTTCAGCCAGGTTTCTAGCTCCACCCAAC
AAAGTAAGGTCCCCCAACAATTTAGCTCCCCCCAAAAAATTGCCTTGTGC
TAGGTCCCCTAACACTTCAGGTCCCAAGATAAACTAAAACAAAAACATTT
TTCTCTCGTCCCCGTACAGAGAAGTCCTGATAAATGAAAACTAAATTTTA
CTTGTATTAATATTTTGTGTACAAATCTTTAGCTTTTTGTATTTGATTTA
AAATAGTAAGATAAGAGATCTTTTGAAATTAGCTGAACAGCCCCCAGAGT
CTCAGTCAGATCATCTAGGCTCCCCCCAACAATCTAGATCCCCCCAAATA
TTTTGGTAATTTTAGCCCCCAGGCTCTTTAAAGGCCAAAATATTTCTTAG
CTCCCTCCCCCCCCCCATAAAAAAAGTAAGGGGGGGCTGAAGCTATGAAT
ATGTTCACATTTTATTTTATAAAATTTTTCACTTTGCTTGTAACGTCATC
AAAAACAACAATGTTCCCGGGCGCCCTCGGTAAATAATTTCAAAGTGTTT
GATTGATGATTTTGTTTATCACAATGGTCACATTTTTCAAAACAACCAAC
AGAAGTTAGTTCACAAACTAGGTAACTAAAGCACTTTTTATGTGATCCTA
CATAGCTCTCCGGCTCTAATGCTTTTGAGGAGAAAATTTCTCTTGACAAC
CAGTGACAATGGTATCTAAAACACAAATGTGCTCTTGTGAAAAATGTAAG
ATAATACCCTTGCAATGAAGCTGTAAAGTAACGTCAATATAGTTCAGTTA
TTTGAGTGCTGAAAATAATTTACTTTTCGTGTAAAGACACACGGAAAGCT
TTTTTAAAACATTCATCAACCTGTTCACCTGTTCGGTAAAATATACCCCT
CATATATCATAAACACAAATACGGGGTATATCTTGGTCAGGAATTCATAC
AATATTCCTATCACGTATGTCAAAATCAATTTGAGGATGCACACAACACA
CCAACAAGGCCTCATCACAAATATTTAAGGAAAAGTAGATCTAGAGATCT
CTGTGCACCTGGTTACACCTACATTAAGCAGTGGTACCATTAGGATACTT
GTTTTAAAAAACTTTGAAATGTTCTTTATTTAACATCACTTGATGTATTT
GACTTAACATGGTCCTGGTGAGCGTCTATTTGATTTTGAGTGTATTATTT
TTAGAACATACCAGATTTGAAAGATCAAAATGCCATTCAACAATTTTTCC
TTGCTTCTGTTGAAGAAGGAGAAAGATATTTGGCCATGCAAGATTACGAA
AACTGTGTCAATAGCCTAACACAAGCCATCGCTGTATGTGGTCAACCTCA
GCAATTANATTTGGCCATGCAAGATTACGAAAACTGTGTCAATAGCCTAA
CACAAGCCATCGCTGTATGTGGTCAACCTCAGCAATTACTTCAAGTCTTC
AGAACTACGCTACCTCCTCAAGTTTTCCAAATGTTGTTAGCAAACCTTGC
AGCATTAGGTGAAAATCAACCTGCTGGTGCAAGTGGTATGAATGTTGCAA
GTGGAATGAGCGTTGGTGCTCCTATGGGTGTAAGTAGCTTTTATAACTAC
TTTAATAAGGCAGTCAAAGTATATAAAAGAAATGGGACTAAGTTTTTTGT
TTGAGACTTCAGGAGACTTAGTTAATAATAAAGTTTGCTTTCTTAGCTTT
TTAAAGAGGTGTCTCCAAAAGCTTTGGTTTTTGACTCTAATACCAGACAA
ATTTTCTGTTTAGGCTCATTTTGGCTACCAGTGTTTTTTGAATGAAACAG
TGTTTTAAGATGTCAATTAAATGGATAGCTAAGCTAACTTTACTTGTTTT
AGCTCGTTTGTTTGTTTGTGGTATCATATAATCCTTCCCTTAATCAGATA
CACTGGGAATTTTGTATACATTTTTTAAGTCAGCAACATTAGAGGCGATA
ACATTCACACCTCCAAAGCAAACATAACACCCCTGTGGAGTGTAACCAAT
CACAAGCCATTAAGTTTAGAACCCATACTAAAAATTTTACACATCGCTCC
TCATCACTGTCCTTGCATCCAAATTTGAATGGGGTACTCTAGGTTCCAAA
TAAACAGGGGGAGTTCGAATAAACGGGGGGGGGTTGGAAAATTTTCTAGA
TTTTGATAAACGGGGGGACCTAATTGCCGGGGGGGTTGGAAATTGTACCT
CTGAANGGGGGTCCTAATAAGGTCCGGGGGGTTGGAAAATTTTCGAAAAA
TTAACAAGCGGGGGGCCGTTTATTTGGAACCTAAGAGTAGGGGTTTGGTT
GACACATGTTTTCAGTTTTCAATTGATAAACCCTGCATTTCTTTCCAGGT
ACCAGAAGTAAAAACAACAGATGAAACTGACGTCCTCGATTAAAAGAAAG
ACAAAAAAATGTACAACTCATCGCNGGGGGGTCCTAATAAGGTCCGGGGG
GTTGGAAAATTTTCGAAAAATTAACAAGCGGGGGGCCGTTTATTTGGAAC
CTAAGAGTAGGGGTTTGATTGACACATGTTTTCAGTTTTCAATTGATAAA
TCCTGCATTTCTTTCCAGGTACCAGAAGTAAAAACAACAGATGAAACTGA
CGTCCTCGATTAAAAGAAAGACAAAAAAATGTACAACTCATCGTAAAAAA
AAATTGAAAAATCAAAATATGACAAAGACAGATTCTAAAACAGCAAACAA
GACAACATACTTAGTTTTTATAGATTTATTTGTATATAGATGCTCTTACT
TTTTCTATTTTGATGTACAGAAAGATGGCCAACACGCGCTTTAGAGTAAT
CCATAATTATAATACAATTTTGAATTTTTTTTTAAATCGACTCTTCAAAA
ATATAACCTTGCCCCTTCAG Coding sequence (CDS) from alignment at scaffold_375:404169..407638- >TCONS_00062988 ID=TCONS_00062988|Name=TCONS_00062988|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_375:404169..407638- (Clytia hemisphaerica)
GTACCAGAAGTAAAAACAACAGATGAAACTGACGTCCTCGATTAAAACAT
ACCAGATTTGAAAGATCAAAATGCCATTCAACAATTTTTCCTTGCTTCTG
TTGAAGAAGGAGAAAGATATTTGGCCATGCAAGATTACGAAAACTGTGTC
AATAGCCTAACACAAGCCATCGCTGTATGTGGTCAACCTCAGCAATTANA
TTTGGCCATGCAAGATTACGAAAACTGTGTCAATAGCCTAACACAAGCCA
TCGCTGTATGTGGTCAACCTCAGCAATTACTTCAAGTCTTCAGAACTACG
CTACCTCCTCAAGTTTTCCAAATGTTGTTAGCAAACCTTGCAGCATTAGG
TGAAAATCAACCTGCTGGTGCAAGTGGTATGAATGTTGCAAGTGGAATGA
GCGTTGGTGCTCCTATGGGTGGAAGGGAGAGAGCCAGAAGAAATGCATCA
AATTCAAAGAAAAAATTGGTACCAGAAGTAAAAACAACAGATGAAACTGA
CGTCCTCGATTAAAACATACCAGATTTGAAAGATCAAAATGCCATTCAAC
AATTTTTCCTTGCTTCTGTTGAAGAAGGAGAAAGATATTTGGCCATGCAA
GATTACGAAAACTGTGTCAATAGCCTAACACAAGCCATCGCTGTATGTGG
TCAACCTCAGCAATTANATTTGGCCATGCAAGATTACGAAAACTGTGTCA
ATAGCCTAACACAAGCCATCGCTGTATGTGGTCAACCTCAGCAATTACTT
CAAGTCTTCAGAACTACGCTACCTCCTCAAGTTTTCCAAATGTTGTTAGC
AAACCTTGCAGCATTAGGTGAAAATCAACCTGCTGGTGCAAGTGGTATGA
ATGTTGCAAGTGGAATGAGCGTTGGTGCTCCTATGGGTGGAAGGGAGAGA
GCCAGAAGAAATGCATCAAATTCAAAGAAAAAATTGGTACCAGAAGTAAA
AACAACAGATGAAACTGACGTCCTCGATTAAAACATACCAGATTTGAAAG
ATCAAAATGCCATTCAACAATTTTTCCTTGCTTCTGTTGAAGAAGGAGAA
AGATATTTGGCCATGCAAGATTACGAAAACTGTGTCAATAGCCTAACACA
AGCCATCGCTGTATGTGGTCAACCTCAGCAATTANATTTGGCCATGCAAG
ATTACGAAAACTGTGTCAATAGCCTAACACAAGCCATCGCTGTATGTGGT
CAACCTCAGCAATTACTTCAAGTCTTCAGAACTACGCTACCTCCTCAAGT
TTTCCAAATGTTGTTAGCAAACCTTGCAGCATTAGGTGAAAATCAACCTG
CTGGTGCAAGTGGTATGAATGTTGCAAGTGGAATGAGCGTTGGTGCTCCT
ATGGGTGGAAGGGAGAGAGCCAGAAGAAATGCATCAAATTCAAAGAAAAA
ATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062988-exon-scaffold_375-1575043694:407589..407638 | TCONS_00062988-exon-scaffold_375-1575043694:407589..407638 | Clytia hemisphaerica | exon |
| TCONS_00062988-exon-scaffold_375-1575043694:405460..405834 | TCONS_00062988-exon-scaffold_375-1575043694:405460..405834 | Clytia hemisphaerica | exon |
| TCONS_00062988-exon-scaffold_375-1575043694:404169..404470 | TCONS_00062988-exon-scaffold_375-1575043694:404169..404470 | Clytia hemisphaerica | exon |
| TCONS_00062988-exon-scaffold_375-1510915933:407589..407638 | TCONS_00062988-exon-scaffold_375-1510915933:407589..407638 | Clytia hemisphaerica | exon |
| TCONS_00062988-exon-scaffold_375-1510915933:405460..405834 | TCONS_00062988-exon-scaffold_375-1510915933:405460..405834 | Clytia hemisphaerica | exon |
| TCONS_00062988-exon-scaffold_375-1510915933:404169..404470 | TCONS_00062988-exon-scaffold_375-1510915933:404169..404470 | Clytia hemisphaerica | exon |
| TCONS_00062988-exon-scaffold_375-1491911889:407589..407638 | TCONS_00062988-exon-scaffold_375-1491911889:407589..407638 | Clytia hemisphaerica | exon |
| TCONS_00062988-exon-scaffold_375-1491911889:405460..405834 | TCONS_00062988-exon-scaffold_375-1491911889:405460..405834 | Clytia hemisphaerica | exon |
| TCONS_00062988-exon-scaffold_375-1491911889:404169..404470 | TCONS_00062988-exon-scaffold_375-1491911889:404169..404470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_375 | supercontig | scaffold_375:404169..407638 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005742 | mitochondrial outer membrane translocase complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006605 | protein targeting |
| GO:0006886 | intracellular protein transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006886 |
intracellular protein transport |
| biological_process |
GO:0006605 |
protein targeting |
| cellular_component |
GO:0005742 |
mitochondrial outer membrane translocase complex |
Blast
The following BLAST results are available for this feature:
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