TCONS_00063040 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063040
Unique NameTCONS_00063040
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063040 ID=TCONS_00063040|Name=TCONS_00063040|organism=Clytia hemisphaerica|type=transcript|length=376bp
AAGCCAACCGTTTGGCCTTCTGAAACTTATTACAGGCCTTTTAGAACACT
TTCCAATAACTCGTTTTTGCCATGccatcaccgcatttagcctacgCCAA
GCCAatcacggtgactcaaattcaCTTGTcaggccttctgaagcctattA
CAGGCCTTCCAAATGACTCAATTTTGCTTGCCCCGTAAGGCTAGAAGTTT
TTACTTCCTTTAACCGGGCATAGGTGTTTTCCGggttttgtttcatttct
tttcatatctgaaacattctttgtCTTTTATATTTGATATAGAATTCCCA
AAATCATTACGCGCAAACTAATTGCTTTCTCGAGATTTCTAAGCCAATAC
AAATTTGTTGCTTAAGCATCCAAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_377:5497..5872

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063040 ID=TCONS_00063040|Name=TCONS_00063040|organism=Clytia hemisphaerica|type=transcript|length=376bp|location=Sequence derived from alignment at scaffold_377:5497..5872 (Clytia hemisphaerica)
CCCTTGGATGCTTAAGCAACAAATTTGTATTGGCTTAGAAATCTCGAGAA
AGCAATTAGTTTGCGCGTAATGATTTTGGGAATTCTATATCAAATATAAA
AGacaaagaatgtttcagatatgaaaagaaatgaaacaaaaccCGGAAAA
CACCTATGCCCGGTTAAAGGAAGTAAAAACTTCTAGCCTTACGGGGCAAG
CAAAATTGAGTCATTTGGAAGGCCTGTaataggcttcagaaggcctgACA
AGtgaatttgagtcaccgtgatTGGCTTGGcgtaggctaaatgcggtgat
ggCATGGCAAAAACGAGTTATTGGAAAGTGTTCTAAAAGGCCTGTAATAA
GTTTCAGAAGGCCAAACGGTTGGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039490XLOC_039490Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063040-exon-scaffold_377-1491911889:5497..5872TCONS_00063040-exon-scaffold_377-1491911889:5497..5872Clytia hemisphaericaexon
TCONS_00063040-exon-scaffold_377-1510915933:5497..5872TCONS_00063040-exon-scaffold_377-1510915933:5497..5872Clytia hemisphaericaexon
TCONS_00063040-exon-scaffold_377-1575043694:5497..5872TCONS_00063040-exon-scaffold_377-1575043694:5497..5872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_377supercontigscaffold_377:5497..5872 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.29191	1.35833	1.63876	0.767095	0.537061	0.221746	0	0.141485	0.282576	0	0.120631	0	0.318958	0	0	0	0	0	0	0	0.228089	1.01782	0	0.310883	0.235794	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063040 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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