TCONS_00063335 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063335
Unique NameTCONS_00063335
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063335 ID=TCONS_00063335|Name=TCONS_00063335|organism=Clytia hemisphaerica|type=transcript|length=651bp
CTTACATTTCTGACACCTTTCAGAAAATCACGGTAAATGTAAAATGGGTC
GGTCGAACCTTGGAAAAAATACATTATACAATATACAAAAGCACAATTTA
AACTCGTGAGTTctaaaatttacgaaaaatGAATATTGATTCATTCAAAA
GGGTCagtaattttgaaactttttgagtAAAATTCTGTAAAGTCACCTAG
TTGAGCGTACAGATTAAATGATGTGATGTCATAAACCCCTTACTTCTATT
GGTGTCAGGCGATTACAAAATGTATATCGGAGAATTTCTGTTCTTGGTGT
TGACAGTAGTAAAGAAAAGTGCGTCTGTATTTAGTTCACGAAACTCCGTG
AGCCAATCTCCATCTTTGTATTGAGATCTTTCTATTAATCTTTTACAATC
GTtgttttttgtgattttacaaattaaaatcaaatatttggGTCGAAGTT
TATTCTTTTCATCCACACAAACCGCAAACTGGAACACATTAATTTCATGC
TTAATTTAAGATGAAGGGCGAATCATGATCAAATCACTTTNTCAGAAATA
TTGTTGAGCGGACCACAGTTTATAGAAGTGAAAAATGTGAAAGATTTATA
GTGGAGGAAAGAAATGAGGTACCAACACAGAATGATGATGATATCCAACA
A
Run BLAST on NCBI

transcript from alignment at scaffold_385:368776..369426

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063335 ID=TCONS_00063335|Name=TCONS_00063335|organism=Clytia hemisphaerica|type=transcript|length=651bp|location=Sequence derived from alignment at scaffold_385:368776..369426 (Clytia hemisphaerica)
TTGTTGGATATCATCATCATTCTGTGTTGGTACCTCATTTCTTTCCTCCA
CTATAAATCTTTCACATTTTTCACTTCTATAAACTGTGGTCCGCTCAACA
ATATTTCTGANAAAGTGATTTGATCATGATTCGCCCTTCATCTTAAATTA
AGCATGAAATTAATGTGTTCCAGTTTGCGGTTTGTGTGGATGAAAAGAAT
AAACTTCGACccaaatatttgattttaatttgtaaaatcacaaaaaacaA
CGATTGTAAAAGATTAATAGAAAGATCTCAATACAAAGATGGAGATTGGC
TCACGGAGTTTCGTGAACTAAATACAGACGCACTTTTCTTTACTACTGTC
AACACCAAGAACAGAAATTCTCCGATATACATTTTGTAATCGCCTGACAC
CAATAGAAGTAAGGGGTTTATGACATCACATCATTTAATCTGTACGCTCA
ACTAGGTGACTTTACAGAATTTTactcaaaaagtttcaaaattactGACC
CTTTTGAATGAATCAATATTCatttttcgtaaattttagAACTCACGAGT
TTAAATTGTGCTTTTGTATATTGTATAATGTATTTTTTCCAAGGTTCGAC
CGACCCATTTTACATTTACCGTGATTTTCTGAAAGGTGTCAGAAATGTAA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039685XLOC_039685Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063335-exon-scaffold_385-1491911889:368776..369426TCONS_00063335-exon-scaffold_385-1491911889:368776..369426Clytia hemisphaericaexon
TCONS_00063335-exon-scaffold_385-1510915933:368776..369426TCONS_00063335-exon-scaffold_385-1510915933:368776..369426Clytia hemisphaericaexon
TCONS_00063335-exon-scaffold_385-1575043694:368776..369426TCONS_00063335-exon-scaffold_385-1575043694:368776..369426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:368776..369426 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.103195	0	0.135278	0	0	0.213828	1.38795	0.609823	0.0455779	0	0	0	2.55975	3.21431	0.232818	0.340682	0.184064	0.585692	0.517071	1.92281	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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