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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063286 ID=TCONS_00063286|Name=TCONS_00063286|organism=Clytia hemisphaerica|type=transcript|length=1209bp tTAATTTGCAAGTTGTCAGTACAAAGAATATGCGGGCAAAAGTTATTTGC GTATTTTCGGACACGATGAAAAAATTCTGGTCAATTTTGGCCATTCTTGG TTTTTTCATTGCCACGTGTTTTTCGCATATGCTAAAACTAAACGAATGCG GTAATTATGATGGTATATTTTCCAAGATAAAGTACGATCAACGACTAATC GGTGATATATTAAATGTTATCGGAGCAATCACATTAAGAgggtgtttaac aaaatgtctTTATCACCCCATATGCTTAAGTGTGAATTATAGAAGGGCGA ATTTAACATGTGAGTTATTGGGCGTGGCAATTCAAGTGTTCAACCCAACA AAGAATGACACCCTTATCTCAGCTGCTGGGTGGAATCATTTTGAAACTGA TTATACAATAAAACAGTTGGGACGTCGGTGTACTGCAAACAACCCGCCAT GCTCTGAATACGAAATATGTGAAGATATTTGTGGAGCACCAGGTTATCAA TGTGTAAAACGAACACTACGTCACACAATTGCAGAATATTCAGCAGTATC AGAATTAGCTGGACATGAAGCAATATATGCATTTGATGGTAACGAATATA GGATCTACCATTCTCAAGGCAGTACAGATGGTAATTTTTGGATTAAAGCT ACCTTTGGCAAACGTGTTTTTATAACTGCTGTTGAGGTCGTTAACCGATT AATTCACTTGGGACAAGTATACGAGAATCGAAATGATAATATTGACTTGA GAACAATTTTACATGAAGGAGATGAAACCATTGATAATGTCTTTGGTAAT ACAGGAGATCTAGGGGAAAGAATAATTATCCCTTGCAATCGATTGGCTGA CGAGTTACTTGCTTACCAATCAAAAGAGGTTACGATTGGGATCATTCAAA TTGGTGAGATCTGGGTCTATGGTAAAGTCCCTTTCGAATGAATCCTCAAA GTAGGTTTCCTGAGTGTCTTGGTTAACAAGGTTGCTATCGACTACGAGCA TAAGATTAACTGAAATTtcctggttcttataaaaaaagtgtgcaCGCATA ATCACAAGAAAATACTTTCCGTGCCACAAGGAAATAACTTTAAGTAAAAT CCAGCCATTGAAGAAATCAATGCAAAAAGACACACTGCAAAAAGTttggt tttgccaatttttttcctGTACTTCAAAGATCCGGCTTCAAAGGGTCAAT CAGAGGCAA Run BLAST on NCBI protein sequence of TCONS_00063286-protein >TCONS_00063286-protein ID=TCONS_00063286-protein|Name=TCONS_00063286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
NLQVVSTKNMRAKVICVFSDTMKKFWSILAILGFFIATCFSHMLKLNECG NYDGIFSKIKYDQRLIGDILNVIGAITLRGCLTKCLYHPICLSVNYRRAN LTCELLGVAIQVFNPTKNDTLISAAGWNHFETDYTIKQLGRRCTANNPPC SEYEICEDICGAPGYQCVKRTLRHTIAEYSAVSELAGHEAIYAFDGNEYR IYHSQGSTDGNFWIKATFGKRVFITAVEVVNRLIHLGQVYENRNDNIDLR TILHEGDETIDNVFGNTGDLGERIIIPCNRLADELLAYQSKEVTIGIIQI GEIWVYGKVPFE Run BLAST on NCBI transcript from alignment at scaffold_385:393018..398376- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063286 ID=TCONS_00063286|Name=TCONS_00063286|organism=Clytia hemisphaerica|type=transcript|length=5359bp|location=Sequence derived from alignment at scaffold_385:393018..398376- (Clytia hemisphaerica) TTAATTTGCAAGTTGTCAGTACAAAGAATATGCGGGCAAAAGTTATTTGC
GTATTTTCGGACACGATGAAAAAATTCTGGTCAATTTTGGCCATTCTTGG
TTTTTTCATTGCCACGTGTTTTTCGCATATGCTAAAACTAAACGAATGCG
GTAATTATGATGGTATATTTTCCAAGATAAAGTACGATCAACGACTAATC
GGTGATATATTAAATGTTATCGGAGCAATCACATTAAGAGGGTGTTTAAC
AAAATGTCTTTATCACCCCATATGCTTAAGTGTGAATTATAGAAGGGCGA
ATTTAACATGTGAGTTATTGGGCGTGGCAATTCAAGTGTTCAACCCAACA
AAGAATGACACCCTTATCTCAGCTGCTGGGTGGAATCATTTTGAAACTGA
TTATACAATAAAACAGGTAAAAATACGAACTTTTTACTTTTCTTTAAACC
AGCCCTATCTCACCGACCGAGAGTGAAATATGGTGGGAGAGGGCATCCTC
ATGTAATCCAAAGCCTTAAAGGTTTTCTTTTACATAAGTGTTTCCGTTTT
TATACTGAAATATAAATAGATAGGAGGGACAATGAGCCGACCAATCTTAG
TTTATTTGAGGAAGAATTTAGAATTAAAGAAAAAACTGTAAGCACCCTTT
TTTTATAAGAATGGTGTTTTTCCATTTCATCATGGAGGGAAAATCATCAA
AAAATATTCATACGATATTGTTAGATTAGGATCCAAATTCAACTTAGATT
CAGCATGTTAGACATGTTATACATAAATGTAGGATAAATTTGAATTCTTG
TGAAAGTTTTGTGCCTTACTGGGGGTTAGTTGATAATTTACAGTTAAAAG
TGCTCTCAAAATTGTATTATAAAATTTTACCCCCGCTATTAAGGATATTG
ATTTTTCGAAGTATCGAACCCCCTGGATCCTACTTTATTAGTATCGAACC
CCCTGGATATCCACTCTTTAAAATATGCTCAACCCCCTGGATATCCTCTA
TTATAAAATGCTAACCCCTGGATATCGTATTTTTTACTTGAAAAGATATT
TTAATTATAACTTAATGTTTTAACTTTCATTTAGTTGGGACGTCGGTGTA
CTGCAAACAACCCGCCATGCTCTGAATACGAAATATGTGAAGATATTTGT
GGAGCACCAGGTTATCAATGTGTAAAACGTAAGCTACCTATTTTTCAAAC
ACAAAGGTGGCCCCGGACAAGGATTGTATCTATACTCTTAGGTGCCAAAT
AAACGGGGGGGGGGGGGGGGGGGGANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCTTATAAGGTCCGGGGGGTTGGAAAATTTTCGAAAAATTAACAA
GCGGGGGGGGGCCTTTATTTGGCACCTAAGAGTAAGTGAAAAGGGCAAAC
CTCAAAATTTTAAAATAACAAAGTAATTTTCGCTAGAACAGCTTAAAAAA
ACTTAAAAAGCTCTACTTCTATTTAAACCCTATGTCTTCTCAGACAAACT
TATATAAGCTATGATATCACACACAGTTAAAAAATGCATCAAAAAATTTG
ACAGTACAGTAGACACATTTTGATACATTGTTGAAAAGGTAATCTTAAGT
GGAGGATTTTACTAGTTGTTCTTTTGGGGAAATTTTTAAGTTTCGCTGAT
TTCAAATACATGTTTTTTTATAAGCAACTGTATGTCCATAACTAGTCATA
GCTTTCACTAAATGCCCCCACAGAAAGGTCATGTCGTGCACTTATAAAGC
TTTCAAAATTAAAGCATCAAAAATTATCAGTAATAATTGATTAATTTAAT
TATTTATTGATTGATTGAAAAAAAATCATATTCCATTAACAAAATACTTG
AAGAATTCCTGCAGCTTGACAATTTAACAAAATTCAAGGAAAAGCTGGAA
AAGCTTCTCAAAAAGATATTTCGAAAATCATGGTATCATTATCTTACTGA
CTTTCGCATCTCCTTGTTTGTTTGTTTTTTCTTACAACAATATATGTCAT
GATCATTCACTAAATAGACCTTTTCCGATAATGCGCTGCAGACATCTTAG
ATTGTAGGCAAAATATATAGCGGTGAATAAATCAACAAAGAAACCAATCA
GAAATAGCTTGTTTATTTTTCATTGGCTGCTATATATTTCAACAATTCTC
TATTGCTACTTTGCCTAATAAACAATAGTAAGATGATAAGATGATACTGC
GTATAAAATTTATCAAAAAGTTCTGCGCCATCTGAAATAGACCAATACTA
GTTAAGGCCCGGGCTCCACTTGCGTACGCTGTGATTGCAGTCAAAAGAAA
AATAAAGAAACGTCATTGTGGTCCATTCAGACGTACAGTCGAAAAGTTGA
AATGTGCCTAATTTTTTTTCAAGTGCATATATAGTACTTTTTCATAATGC
AATCTTTTCTCCAAGCTGAAAGGATTGAAGCCATTAAGATATGATTGCAG
CGCAGACAATGAAGAGACAGGCCTTCAGGAAACTAGACTAATCTTTTGAG
ATTTTAGCTATATACTCTCACTTTATGGTGTTCCTGTATGACTGTCTGTG
TGCCTAGTCTAACCACCGTTAAATGCCTTAACTTGGAAAGCTAGAATTGG
AGCTTTTTCACCAAACCCCGAGAGCGTAAGTTATTTAGGCTATGGGGCCA
TCAATATAGTACGTACGCAGTGAAGAGGGGAGAGGGGAGTTTAGCAAAAG
CGTACATCTATTGTTTAAATGACATCATTTCTATTGTTCTCTGCGTACAA
GGGGGGAGGGGGTATCAAATTTTTGGAAAATCTTTGCGTACATACTATAT
GGACGACCCCTATCACAACTGCATGAAAAAGTGGAACGTGCGCATGCAAA
GTTAAAGGAATGTAAGCAAACTTTTTTCAGGTTTTTAAAATAGATTTACC
ACACTGAACAAACAGTGAAAACACTCTAAGTGAGGTAAATCTATTTTGAA
GACCAAAAAAAAAAATATTGGTTGACATTCAACACATTCAACCACTTTTG
GATTCAACTTTACTTATGTGTACATTCAACTTTTTTGTACTTTGCCGGTA
TCTTGTTTTATCAAGTTAAGAAGGACTTTCTCGAGTTACGACCATATGAT
GGTCTTTAAAGCTTAAGAAGCTCTATAAACAATAAAGCTAGTTATTAATA
TAATAACAGACAGAGATAAATTACAGTTTGAGCAAAGATATCAAATGTAC
ATTTGAAAACTTGAGCAAACTTCTTTAAAGATTCCAGAAAAAGAATTGAA
ATCATAGCTGAAATGAACTTCTGACTAAATTACAGTATATAGTATTCAGT
TTCAAAGACAAGAAACAAAATTTGACGTACAAAACACTTTTTCCAATCAA
TGAATCAGCTCACCATCATAACCAGTCTGCCATTTTGTTTGTTTTGATTT
GCACAAGTAACATGGCGTTCTAGACAAGTAATATTGTATTTCGTGTTATG
GTGTAATCACTATGCTTTTTCTATAATTTGCATTTATAACACTCGCTTCA
GCTTTTCAATGATAAATCAAAACTAATAAAATGTAATACGCAATAATGGT
AATAGCATAAAACGTAATATGAAAATATGTATAACATTTACCGCTGTATA
AATTACCGCCATATTTTTGCGGAACACTTAATTGGCCGGAAAGCCGATTA
CGACGCAAAAACAAAAACAATTCGCAAAGAATCGAGATTCCAGTCCAATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAACATG
TATGTATTCAGATATTTTATACCTTTCTTGGACGAAAAGTTTTCAAGGTC
CATTTTGATATTGAAACACTTCAAAGTATTAATAATATTCATGACGTAAT
GATTTCTACGGAAATACCCCGGTTTTAGCCAGTAGTGGCAAAAAAAAAGT
TGTATAAAAGTTGCCACTATTGGCAAAAGCCGGGGTCTTTCTGTAGAAAA
CATTACCTCATGAATATCATGAATTACAGAAAAAAGTTTTCATTAAATTA
TAATTTCCAGGAACACTACGTCACACAATTGCAGAATATTCAGCAGTATC
AGAATTAGCTGGACATGAAGCAATATATGCATTTGATGGTAACGAATATA
GGATCTACCATTCTCAAGGCAGTACAGATGGTAATTTTTGGATTAAAGCT
ACCTTTGGCAAACGTGTTTTTATAACTGCTGTTGAGGTCGTTAACCGATT
AATTCACTTGGGACAAGTATACGAGAATCGAAATGATAATATTGACTTGA
GAACAATTTTACATGAAGGAGATGAAACCATTGATAATGTCTTTGGTAAT
ACAGGAGATCTAGGGGAAAGAATAATTATCCCTTGCAATCGATTGGCTGA
CGAGTTACTTGCTTACCAATCAAAAGAGGTTACGATTGGGATCATTCAAA
TTGGTGAGATCTGGGTCTATGGTAAAGTCCCTTTCGAATGAATCCTCAAA
GTAGGTTTCCTGAGTGTCTTGGTTAACAAGGTTGCTATCGACTACGAGCA
TAAGATTAACTGAAATTTCCTGGTTCTTATAAAAAAAGTGTGCACGCATA
ATCACAAGAAAATACTTTCCGTGCCACAAGGAAATAACTTTAAGTAAAAT
CCAGCCATTGAAGAAATCAATGCAAAAAGACACACTGCAAAAAGTTTGGT
TTTGCCAATTTTTTTCCTGTACTTCAAAGATCCGGCTTCAAAGGGTCAAT
CAGAGGCAA Coding sequence (CDS) from alignment at scaffold_385:393018..398376- >TCONS_00063286 ID=TCONS_00063286|Name=TCONS_00063286|organism=Clytia hemisphaerica|type=CDS|length=2817bp|location=Sequence derived from alignment at scaffold_385:393018..398376- (Clytia hemisphaerica) GAACACTACGTCACACAATTGCAGAATATTCAGCAGTATCAGAATTAGCT GGACATGAAGCAATATATGCATTTGATGGTAACGAATATAGGATCTACCA TTCTCAAGGCAGTACAGATGGTAATTTTTGGATTAAAGCTACCTTTGGCA AACGTGTTTTTATAACTGCTGTTGAGGTCGTTAACCGATTAATTCACTTG GGACAAGTATACGAGAATCGAAATGATAATATTGACTTGAGAACAATTTT ACATGAAGGAGATGAAACCATTGATAATGTCTTTGGTAATACAGGAGATC TAGGGGAAAGAATAATTATCCCTTGCAATCGATTGGCTGACGAGTTACTT GCTTACCAATCAAAAGAGGTTACGATTGGGATCATTCAAATTGGTGAGAT CTGGGTCTATGGTAAAGTCCCTTTCGAATGATTGGGACGTCGGTGTACTG CAAACAACCCGCCATGCTCTGAATACGAAATATGTGAAGATATTTGTGGA GCACCAGGTTATCAATGTGTAAAACAATTTGCAAGTTGTCAGTACAAAGA ATATGCGGGCAAAAGTTATTTGCGTATTTTCGGACACGATGAAAAAATTC TGGTCAATTTTGGCCATTCTTGGTTTTTTCATTGCCACGTGTTTTTCGCA TATGCTAAAACTAAACGAATGCGGTAATTATGATGGTATATTTTCCAAGA TAAAGTACGATCAACGACTAATCGGTGATATATTAAATGTTATCGGAGCA ATCACATTAAGAGGGTGTTTAACAAAATGTCTTTATCACCCCATATGCTT AAGTGTGAATTATAGAAGGGCGAATTTAACATGTGAGTTATTGGGCGTGG CAATTCAAGTGTTCAACCCAACAAAGAATGACACCCTTATCTCAGCTGCT GGGTGGAATCATTTTGAAACTGATTATACAATAAAACAGGAACACTACGT CACACAATTGCAGAATATTCAGCAGTATCAGAATTAGCTGGACATGAAGC AATATATGCATTTGATGGTAACGAATATAGGATCTACCATTCTCAAGGCA GTACAGATGGTAATTTTTGGATTAAAGCTACCTTTGGCAAACGTGTTTTT ATAACTGCTGTTGAGGTCGTTAACCGATTAATTCACTTGGGACAAGTATA CGAGAATCGAAATGATAATATTGACTTGAGAACAATTTTACATGAAGGAG ATGAAACCATTGATAATGTCTTTGGTAATACAGGAGATCTAGGGGAAAGA ATAATTATCCCTTGCAATCGATTGGCTGACGAGTTACTTGCTTACCAATC AAAAGAGGTTACGATTGGGATCATTCAAATTGGTGAGATCTGGGTCTATG GTAAAGTCCCTTTCGAATGATTGGGACGTCGGTGTACTGCAAACAACCCG CCATGCTCTGAATACGAAATATGTGAAGATATTTGTGGAGCACCAGGTTA TCAATGTGTAAAACAATTTGCAAGTTGTCAGTACAAAGAATATGCGGGCA AAAGTTATTTGCGTATTTTCGGACACGATGAAAAAATTCTGGTCAATTTT GGCCATTCTTGGTTTTTTCATTGCCACGTGTTTTTCGCATATGCTAAAAC TAAACGAATGCGGTAATTATGATGGTATATTTTCCAAGATAAAGTACGAT CAACGACTAATCGGTGATATATTAAATGTTATCGGAGCAATCACATTAAG AGGGTGTTTAACAAAATGTCTTTATCACCCCATATGCTTAAGTGTGAATT ATAGAAGGGCGAATTTAACATGTGAGTTATTGGGCGTGGCAATTCAAGTG TTCAACCCAACAAAGAATGACACCCTTATCTCAGCTGCTGGGTGGAATCA TTTTGAAACTGATTATACAATAAAACAGGAACACTACGTCACACAATTGC AGAATATTCAGCAGTATCAGAATTAGCTGGACATGAAGCAATATATGCAT TTGATGGTAACGAATATAGGATCTACCATTCTCAAGGCAGTACAGATGGT AATTTTTGGATTAAAGCTACCTTTGGCAAACGTGTTTTTATAACTGCTGT TGAGGTCGTTAACCGATTAATTCACTTGGGACAAGTATACGAGAATCGAA ATGATAATATTGACTTGAGAACAATTTTACATGAAGGAGATGAAACCATT GATAATGTCTTTGGTAATACAGGAGATCTAGGGGAAAGAATAATTATCCC TTGCAATCGATTGGCTGACGAGTTACTTGCTTACCAATCAAAAGAGGTTA CGATTGGGATCATTCAAATTGGTGAGATCTGGGTCTATGGTAAAGTCCCT TTCGAATGATTGGGACGTCGGTGTACTGCAAACAACCCGCCATGCTCTGA ATACGAAATATGTGAAGATATTTGTGGAGCACCAGGTTATCAATGTGTAA AACAATTTGCAAGTTGTCAGTACAAAGAATATGCGGGCAAAAGTTATTTG CGTATTTTCGGACACGATGAAAAAATTCTGGTCAATTTTGGCCATTCTTG GTTTTTTCATTGCCACGTGTTTTTCGCATATGCTAAAACTAAACGAATGC GGTAATTATGATGGTATATTTTCCAAGATAAAGTACGATCAACGACTAAT CGGTGATATATTAAATGTTATCGGAGCAATCACATTAAGAGGGTGTTTAA CAAAATGTCTTTATCACCCCATATGCTTAAGTGTGAATTATAGAAGGGCG AATTTAACATGTGAGTTATTGGGCGTGGCAATTCAAGTGTTCAACCCAAC AAAGAATGACACCCTTATCTCAGCTGCTGGGTGGAATCATTTTGAAACTG ATTATACAATAAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00063286-exon-scaffold_385-1575043694:397961..398376 | TCONS_00063286-exon-scaffold_385-1575043694:397961..398376 | Clytia hemisphaerica | exon |
TCONS_00063286-exon-scaffold_385-1575043694:397199..397292 | TCONS_00063286-exon-scaffold_385-1575043694:397199..397292 | Clytia hemisphaerica | exon |
TCONS_00063286-exon-scaffold_385-1575043694:393018..393716 | TCONS_00063286-exon-scaffold_385-1575043694:393018..393716 | Clytia hemisphaerica | exon |
TCONS_00063286-exon-scaffold_385-1510915933:397961..398376 | TCONS_00063286-exon-scaffold_385-1510915933:397961..398376 | Clytia hemisphaerica | exon |
TCONS_00063286-exon-scaffold_385-1510915933:397199..397292 | TCONS_00063286-exon-scaffold_385-1510915933:397199..397292 | Clytia hemisphaerica | exon |
TCONS_00063286-exon-scaffold_385-1510915933:393018..393716 | TCONS_00063286-exon-scaffold_385-1510915933:393018..393716 | Clytia hemisphaerica | exon |
TCONS_00063286-exon-scaffold_385-1491911889:397961..398376 | TCONS_00063286-exon-scaffold_385-1491911889:397961..398376 | Clytia hemisphaerica | exon |
TCONS_00063286-exon-scaffold_385-1491911889:397199..397292 | TCONS_00063286-exon-scaffold_385-1491911889:397199..397292 | Clytia hemisphaerica | exon |
TCONS_00063286-exon-scaffold_385-1491911889:393018..393716 | TCONS_00063286-exon-scaffold_385-1491911889:393018..393716 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_385 | supercontig | scaffold_385:393018..398376 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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