TCONS_00063391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063391
Unique NameTCONS_00063391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063391 ID=TCONS_00063391|Name=TCONS_00063391|organism=Clytia hemisphaerica|type=transcript|length=315bp
CCCTTGAACTTGAAGTCATCAATGAAACGCCTTGCTTTGCTAGGGCATTA
TCATCAGAAGTTCGtcttgaacttgagggaatcatcAGATGTTCACCCTA
CATCAAATCATCAACTGTTCGACGGTCATCTTCACAGTTCACCACGAATT
TTGGTAACTATTACCACCGTGTTGTACATCATGAGCTGAATAGTCCGATT
GATAGACTGAATGAACTCTTGGTTCTTCCCCTTTTGGGTGGGAGTGTTTt
ggataatgtgcttataattGAATTGTTTTGGTTGTGACGTATGAGCTCGA
TAATGACAAGATGAT
Run BLAST on NCBI

transcript from alignment at scaffold_388:17156..20309-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063391 ID=TCONS_00063391|Name=TCONS_00063391|organism=Clytia hemisphaerica|type=transcript|length=3154bp|location=Sequence derived from alignment at scaffold_388:17156..20309- (Clytia hemisphaerica)
CCCTTGAACTTGAAGTCATCAATGAAACGCCTTGCTTTGCTAGGGCACTA
TCATCAGAAGTTCGCCCCTGAACTTTGAAGTTACCATCAATGAAACAAGG
CCCTGTACCAATTGTTCGCCTTGTTTCTACAAAAGTGCTATCACCAGAAG
TTCATTGAACGTGACGCAATCATCAGTCGTTCGCCTGGAACCAGGCATTA
TCATCAGAAGTTCGTCTTGAACTTGAGGGAATCATCAGATGTTCACCCTA
CATCAAATCATCAACTGTTTCAACGGTCATCTTCACAGTTCGCCACGAAA
TTTTGGTACGACTACCACCGTGTTGTATATAATGAGCTGAATAGTCCGAT
TGATAGACTGAATGAACTCTTGGTTCTTCCCCTTTTGGGTGGGAGTGTTT
TGGATAATGTGCTTATAACTGATTTGTTTTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTGTACATTATTTTACCTAGTCGACATTTTTCTTTCATAGGCCTA
TGTACATATTTTTAGTTTTTGAACTTTGTGTTTTTAGCTTGAACAACAAT
CAACAAGATTCCTACGTTCCAAGATTTTTGACTCAACTATCCCTAACANT
CCTACGTTCCAAGATTTTTGACTCAACTATCCCTAACATCTTCAAGAAAA
TATTTGGGAATCAAGTGGACAACAATCAAGTTTTGGAGGACAAAGTTTTG
GTGGGACAATCAAGTGGAGAACTTGGACAATGCTGAGAGGAAGAGACACA
TGTCAGAGGTATACCTTAAACTTTGGCTTGGAAATTTGAAGATAGCTCAC
AATCTTCTTCGTCTCTCAAGTCCTATCGTCTGGAAAATCGCCTATCGTTT
GGAACATACTCTCTCTGATACCCTCCATATTGTTTCCGCTACCCCCTCNC
TATCGTCTGGAAAATCGCCTATCGTTTGGAACATACTCTCTCTGATACCC
TCCATATTGTTTCCGCTACCCTCTCATTCGGAAAAGGCCGTCCGAATATC
ATCCTCCAATCGCACGTTCGGAAATCGTCTATCCAACGCCCGTTGTCCTC
CCAAATTTATCGTTTCCGGGATTCACTCTATCCGGAATTCTCTCCTACCG
TATCGTCACAGATACTCCATTTCGTTCAGANTTCACTGAGGAAGCACTTC
ACACGTTCCTCCTTGAAGTTGAATCAACTATCAATTCGCGACCACTCACA
CCACTGAGTGACAACATCAACGATTTTGAAGCTCTCACCCCTAACCACTT
TCTATTAGGAAGAGCTTCACCCAATCTTCCAATCATTTATAACGCTCAAC
AAAACAACCTGAAGAGCAAGTGGAAGTAGGTCCAATCAACACTTGACGAA
TTTTGGAAGAGATGGGCAAAGGAGTACCTACCTACAATCAACGAACGAGC
TAAATGGCGCCATCCAATACGGAACACTAAAGAAGGGGATTTAGTCGTCA
TCAGCGAAAAGGACATCCCAAGAAACAAATGGCCATTGGCACGCGTTGTT
AGTGTCATCACATCAGATGATGGCATCACAAGGATTGCAAAGGTCAAGAC
GTCTGACGGTTCGATATACACTAGGCCAACCGGTAGCCTAGGCTTGTTGG
AAGACGGAACCTCATCCAATTGACGATTGCCCTGTCACCGAGTTAAGCAA
AAACATATGCTTATTATGTTGTGTTAATAATTATCACCAATGGTACACCT
TACGTTGCTAAGGTACTATCAACAGAAGTTCGTCCCTGAACTTGAAGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTGCTAAGGTACTATCCACAAAGGTTCGCCCTTGAACTTGAAGTC
ATCAATGAAACGCCTTGCTTTGCTAGGGCACTATCATCAGAAGTTCGCCC
CTGAACTTTGAAGCTACCACCAATGAAACAAGACCCTATTGGGGTACCAA
TTGTTCGCCTTGTTCCTACCGAAGTGCTATCACTAGAAGTTCATTGAACG
TGACGCAATCATCAGCCGTTCGCCTGAAACCAGGCATTATCATCAGAAGT
TCGTCTTGAACTTGAGGGAATCATCAGATGTTCACCCTACATCAAATCAT
CAACTGTTCGACGGTCATCTTCACAGTTCACCACGAATTTTGGTAACTAT
TACCACCGTGTTGTACATCATGAGCTGAATAGTCCGATTGATAGACTGAA
TGAACTCTTGGTTCTTCCCCTTTTGGGTGGGAGTGTTTTGGATAATGTGC
TTATAATTGAATTGTTTTGGTTGTGACGTATGAGCTCGATAATGACAAGA
TGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039724XLOC_039724Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063391-exon-scaffold_388-1575043694:20266..20309TCONS_00063391-exon-scaffold_388-1575043694:20266..20309Clytia hemisphaericaexon
TCONS_00063391-exon-scaffold_388-1575043694:17156..17426TCONS_00063391-exon-scaffold_388-1575043694:17156..17426Clytia hemisphaericaexon
TCONS_00063391-exon-scaffold_388-1510915933:20266..20309TCONS_00063391-exon-scaffold_388-1510915933:20266..20309Clytia hemisphaericaexon
TCONS_00063391-exon-scaffold_388-1510915933:17156..17426TCONS_00063391-exon-scaffold_388-1510915933:17156..17426Clytia hemisphaericaexon
TCONS_00063391-exon-scaffold_388-1491911889:20266..20309TCONS_00063391-exon-scaffold_388-1491911889:20266..20309Clytia hemisphaericaexon
TCONS_00063391-exon-scaffold_388-1491911889:17156..17426TCONS_00063391-exon-scaffold_388-1491911889:17156..17426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_388supercontigscaffold_388:17156..20309 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0869376	0	0.37754	0	0	0	0	0	1.55857	0	0	0	0	0.457523	0	0	0	0	0	0.566248	0	0	0	0	0.469844	2.296	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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