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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006356 ID=TCONS_00006356|Name=TCONS_00006356|organism=Clytia hemisphaerica|type=transcript|length=1233bp
NNCATAACCAAAAACGGAATCATCAAACTTCTAAAAGATTTGAACCCTCA
CAAAGCCAGTGGACCAGATGGGATAGGTGCAAGAGTCCTGAAAGAATGTG
CAGAACGGTTGGCAGACGGCCTTGTGCTAATTTTCAATGCATCTCTGAAA
CAAGGCAGAATACCTACAGATTGGAAACATGCAACTATCACCCCCCTTTA
CAAAGGTGGGAACAAGAACCGCTCGAAAGCAGAAAATTACCGCCCTATCA
GCCTAACATCAGTCACATGTAAAGTGTTAGAACATGTTATACACAGTCAT
GTCATCAATCACATGGAAGCCAATGGCTCTCTTACGGATACTCAGCATGA
ATTTCGCAAAAAGAGATCCTGTGAGACTCAACTTCTTCAAACAATTGATT
CATTAGCAAAATCTATCAACAATAAGGAACAAGTGGATAGCATTCTACTA
GACTTCAGTAAGGCTTTCGACAAAGTCTGTCATCGTAAACTgatcattaa
actaaaacatTATNCATTCTACTAGACTTCAGTAAGGCTTTCGACAAAGT
CTGTCATCGTAAACTGAtcatttaactaaaacattatGGAATCAACGGCG
ACATCTTGTCCTGGATTAGGGACTTCTTATCAAACCGTACTCAGTGTGTT
GTTGTACGTGGGAAATCATCGAAATCCTCACCAGTCATTTCTGGAGTACC
TCAGGGTACAGTCCTTGGACCGTTGCTTTTCTTAATTTACATAAACGATT
TGCCCGACGAAGTTAAATCAAAAATAGCTCTATTTGCAGATGATGCATAC
CTTTATCGTTCCATCCTCTCGATTGAAGATGCTGTACAACTTCAAAAGGA
CTTAAACAATCTTGTCTCATGGGAGACAAATTGGTCAATGCAATTCCATC
CTGATAAATGTCTAGTCTTGAGAGTAACCAACAAGAGAAATATCATTGAC
TCAGAATATAATATTCATGGTCAAACACTAAAAACTGTTGACAAAGCAAA
GTACCTTGGTATCACCATCTCAAAGAACCTAACATGGAATAACCACATAA
ACTGGGTTACATCAAAAGCAACCAACACCAGAATGTTTTTACAACGAAAT
TTGTCATGGACTGACAAAAACACGCGTCTAACATGCTATAAAATATTCAT
AAGACCATTGGTGGAATACGCAAGTACGGTATGGGATCCAGTAGATAATC
AATCTTTAATTCACCAAATTGAAATGATTCAAC Run BLAST on NCBI protein sequence of TCONS_00006356-protein >TCONS_00006356-protein ID=TCONS_00006356-protein|Name=TCONS_00006356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
XITKNGIIKLLKDLNPHKASGPDGIGARVLKECAERLADGLVLIFNASLK
QGRIPTDWKHATITPLYKGGNKNRSKAENYRPISLTSVTCKVLEHVIHSH
VINHMEANGSLTDTQHEFRKKRSCETQLLQTIDSLAKSINNKEQVDSILL
DFSKAFDKVCHRKLIIKLKHYXFY Run BLAST on NCBI transcript from alignment at sc0000066:326541..327773 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006356 ID=TCONS_00006356|Name=TCONS_00006356|organism=Clytia hemisphaerica|type=transcript|length=1233bp|location=Sequence derived from alignment at sc0000066:326541..327773 (Clytia hemisphaerica)
GTTGAATCATTTCAATTTGGTGAATTAAAGATTGATTATCTACTGGATCC
CATACCGTACTTGCGTATTCCACCAATGGTCTTATGAATATTTTATAGCA
TGTTAGACGCGTGTTTTTGTCAGTCCATGACAAATTTCGTTGTAAAAACA
TTCTGGTGTTGGTTGCTTTTGATGTAACCCAGTTTATGTGGTTATTCCAT
GTTAGGTTCTTTGAGATGGTGATACCAAGGTACTTTGCTTTGTCAACAGT
TTTTAGTGTTTGACCATGAATATTATATTCTGAGTCAATGATATTTCTCT
TGTTGGTTACTCTCAAGACTAGACATTTATCAGGATGGAATTGCATTGAC
CAATTTGTCTCCCATGAGACAAGATTGTTTAAGTCCTTTTGAAGTTGTAC
AGCATCTTCAATCGAGAGGATGGAACGATAAAGGTATGCATCATCTGCAA
ATAGAGCTATTTTTGATTTAACTTCGTCGGGCAAATCGTTTATGTAAATT
AAGAAAAGCAACGGTCCAAGGACTGTACCCTGAGGTACTCCAGAAATGAC
TGGTGAGGATTTCGATGATTTCCCACGTACAACAACACACTGAGTACGGT
TTGATAAGAAGTCCCTAATCCAGGACAAGATGTCGCCGTTGATTCCataa
tgttttagttaaatgaTCAGTTTACGATGACAGACTTTGTCGAAAGCCTT
ACTGAAGTCTAGTAGAATGNATAatgttttagtttaatgatcAGTTTACG
ATGACAGACTTTGTCGAAAGCCTTACTGAAGTCTAGTAGAATGCTATCCA
CTTGTTCCTTATTGTTGATAGATTTTGCTAATGAATCAATTGTTTGAAGA
AGTTGAGTCTCACAGGATCTCTTTTTGCGAAATTCATGCTGAGTATCCGT
AAGAGAGCCATTGGCTTCCATGTGATTGATGACATGACTGTGTATAACAT
GTTCTAACACTTTACATGTGACTGATGTTAGGCTGATAGGGCGGTAATTT
TCTGCTTTCGAGCGGTTCTTGTTCCCACCTTTGTAAAGGGGGGTGATAGT
TGCATGTTTCCAATCTGTAGGTATTCTGCCTTGTTTCAGAGATGCATTGA
AAATTAGCACAAGGCCGTCTGCCAACCGTTCTGCACATTCTTTCAGGACT
CTTGCACCTATCCCATCTGGTCCACTGGCTTTGTGAGGGTTCAAATCTTT
TAGAAGTTTGATGATTCCGTTTTTGGTTATGNN Coding sequence (CDS) from alignment at sc0000066:326541..327773 >TCONS_00006356 ID=TCONS_00006356|Name=TCONS_00006356|organism=Clytia hemisphaerica|type=CDS|length=525bp|location=Sequence derived from alignment at sc0000066:326541..327773 (Clytia hemisphaerica)
CTAGTAGAATGNATAatgttttagtttaatgatcAGTTTACGATGACAGA
CTTTGTCGAAAGCCTTACTGAAGTCTAGTAGAATGCTATCCACTTGTTCC
TTATTGTTGATAGATTTTGCTAATGAATCAATTGTTTGAAGAAGTTGAGT
CTCACAGGATCTCTTTTTGCGAAATTCATGCTGAGTATCCGTAAGAGAGC
CATTGGCTTCCATGTGATTGATGACATGACTGTGTATAACATGTTCTAAC
ACTTTACATGTGACTGATGTTAGGCTGATAGGGCGGTAATTTTCTGCTTT
CGAGCGGTTCTTGTTCCCACCTTTGTAAAGGGGGGTGATAGTTGCATGTT
TCCAATCTGTAGGTATTCTGCCTTGTTTCAGAGATGCATTGAAAATTAGC
ACAAGGCCGTCTGCCAACCGTTCTGCACATTCTTTCAGGACTCTTGCACC
TATCCCATCTGGTCCACTGGCTTTGTGAGGGTTCAAATCTTTTAGAAGTT
TGATGATTCCGTTTTTGGTTATGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006356-exon-sc0000066-1491911889:326541..327773 | TCONS_00006356-exon-sc0000066-1491911889:326541..327773 | Clytia hemisphaerica | exon |
| TCONS_00006356-exon-sc0000066-1510915933:326541..327773 | TCONS_00006356-exon-sc0000066-1510915933:326541..327773 | Clytia hemisphaerica | exon |
| TCONS_00006356-exon-sc0000066-1575043694:326541..327773 | TCONS_00006356-exon-sc0000066-1575043694:326541..327773 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:326541..327773 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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