TCONS_00063416 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063416
Unique NameTCONS_00063416
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length668

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063416 ID=TCONS_00063416|Name=TCONS_00063416|organism=Clytia hemisphaerica|type=transcript|length=668bp
AAATCAAGATAACAAAGTTTTATCCATTGTTGCACAACTCGAAAAGCTTT
GCTTTGTTGTCTTGATTTGAACTTTCTATCTAAAATTAAAATGGCtactt
tcaaatttcttttcttttaaacataCAGGAACAGATGATAGTTCAACATA
TTATTACTTATTTATGGCAGAAAATAATGATGGTGAGCAGCAGTGTTCCT
CACAGCCATCACAGTCAAAGCGACCAAGAAAGACAAGTCAAAGGATCTAC
AAGCTGAAGAGACCAAAACATAACAATGGAATGAAAAGAAGAATATCAAA
TACTGTAATCACTGCAGATGAGCAAGTTTTGGATATTgatgcaaaaaatt
caaactggcAAATTGCAGAAAATCTGGACACCATCGATAATGAAGAATTA
AATGACATAAATCCACAAAGTGATACAAAAAtgAATAGTTGGTTAGAAAC
GCTTCTTAActttgtcaaaacaaaaaaaagaagaagtcaTGGTTCGAAAG
ATCAAGATCCTGCCAAGAAGATTGGGATTTGCTGAGGAAGAATATTTGGA
GGACAGTGCAGGATAGGGAAGTTTTGGATGAACATTGTAATGTGTGTTGT
GATCGACTTGGTGATCTTTATTGCATGGATTGTCACAAATCATTTTGTCA
TGTATGTGACGATGTCNN
Run BLAST on NCBI

protein sequence of TCONS_00063416-protein

>TCONS_00063416-protein ID=TCONS_00063416-protein|Name=TCONS_00063416-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MAENNDGEQQCSSQPSQSKRPRKTSQRIYKLKRPKHNNGMKRRISNTVIT
ADEQVLDIDAKNSNWQIAENLDTIDNEELNDINPQSDTKMNSWLETLLNF
VKTKKRRSHGSKDQDPAKKIGIC
Run BLAST on NCBI

transcript from alignment at scaffold_389:49590..56427+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063416 ID=TCONS_00063416|Name=TCONS_00063416|organism=Clytia hemisphaerica|type=transcript|length=6838bp|location=Sequence derived from alignment at scaffold_389:49590..56427+ (Clytia hemisphaerica)
AAATCAAGATAACAAAGTTTTATCCATTGTTGCACAACTCGAAAAGCTTT
GCTTTGTTGTCTTGATTTGAACTTTCTATCTAAAATTAAAATGGCtactt
tcaaatttcttttcttttaaacataCAGGAACAGATGATAGTTCAACATA
TTATTACTTATTTATGGCAGAAAATAATGATGGTGAGCAGCAGTGTTCCT
CACAGCCATCACAGTCAAAGCGACCAAGAAAGACAAGTAAGTAGTTTCTT
CTTTgtgttcaacattttcatttgccacattttgtgaaaatgtcGGCGAG
TGGTggaaaaacaagtttttgtgATTGTTTTTTAACGCCCAGTCcagtca
gcaccttgaactgactacccaattcccctcacatggcatgggttgactcT
GGCGAAGGTTCAtccacttgccaagtgaaccgctgcgagNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNACCATTACTGCATATATATAAAACACC
ATACTGTGTCTTAAAGtttgagaaatgtttgtttgctaACTCAGCTTTTT
TGAATTATATACAAGCTCTTTAGTAACGTCGAAGAGTGATACATTGCGCT
TCTCTGCCATCCTTTGCACGGTGTATTTTACCAAATCGCCAATATGTACA
TTTTAAAGACAAAGGCAAATTTTTGTAAGGTTTAGGTTGTAATTGATCAC
ATGTTTCAATCTGTAAACAAGAGATTTAATTTGATGACtggaattttgag
taaaacaaaggaaataaaGTGAGTAAAAAGTATGGCAGANNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATCtggtctg
atatgaaacatgaaTACCGATATCTCAATCTAAAAAATGAGAGTTATGTA
ATTTAAATTTACACAAGAATGATTTAATAATTTATTATAGTGTCCAATCT
TAAATTTAACCACAAAAGATATTTTGTCCAAGAAACCTTAACTTTTCTAA
GACGATGTCATAGAATCCCGAAAGCTCTATTCAATCTTAAAGATTAATTA
AAAATCTCTAAGATTAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGTTGTCATACTTTGCAGAAGTTCCT
TGAATTTTAATCAAACACTTGGATTTTTTAAGACAGTCTGGATTACATGA
TATGACATGAGATTGATAATTGATGATTAAATAATTTGCATTCAGATTTT
AAAAGTCGGCAatgatctatctatctatctatctatattttaAGTATCAA
AAGGTCATAAGACCCATTATCCATACATAAAAATTATAagattgtataaa
aataaaaagtaaataacctatgtaaattttttttgcactaACAGAGGACA
CAAAGAAATAGCTTGAGAAGGCTAAATTAGAGAAATGGCTAGAGTAGGCT
GAATTAGAGTATAAGTAGTGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNCTCGATTCAAACAAttgctaaaaataaattttatt
taataAGTTACATAAATGTAATAGGGATAAAATGCTAAACTAGTGTAATA
ATCAAGGTTTGTCTAATTTATTAGTTCATTTTATTGGGTGATCAATAGTG
CTAATCTATCATTTCAGTTATCTAGATCATGATTGCTGGTCAagaattta
taaatttcaagaattttttaagtTGTAACATCTGAAAAGGTATTACATGT
ATAaacagtgctgcaaatagggaaatatatattatttaaaacaaatttca
atcaattaGAATTGATTATTGATATATTATTANTACACAACATGCattat
cataattttttctctattttttctatttctctaTTTTCCTTCACACTGCA
GATGACTGGATTGCATCATTTTAATCACTAAAACTATTCTTTTAACATGA
AtggatttgaaaaattgttatttCTTTGTAAAGAGGATAATATTAATTCC
ATGGGAAATTTTGAAGGTTGctaaaaacctaaaaattacaaaaattcttT
GTCTACACATCACTTTGTTTAGGTCTTGGTTTGATGAAACAAATTGTGGC
AGTTAACAAATCATNTTGATTATtgatatattattattattgattaGTTG
TCAATTGCTAACAATAACACAAGTCTAAGGATAAGCAATCAATTACTGTC
AAAGGACAAGAAAAAACATATCATCCATGTAGCATTATGTCTGATGTTTT
AGATAAAaccaagaatgttttttttNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGATAATCTAG
GTCAAAGGATCTACAAGCTGAAGAGACCAAAACATAACAATGGAATGAAA
AGAAGAATATCAAATACTGGTAAATGTGCAGTTACATTACTTTATGCACT
GGGTAATATTGAGGTACCTAAATCTAAATAGAGTTGTGTATCTTGtatgt
attgaaatttcaaCTCTTTCTTGTTATTTTCACCAGTAATCACTGCAGAT
GAGCAAGTTTTGGATATTgatgcaaaaaattcaaactggcAAATTGCAGA
AAATCTGGACACCATCGATAATGAAGAATTAAATGACATAAATCCACAAA
GTGATACAAAAAGTAGGTATCATATCATCCCTTCTTGAAGTCAATTAAGG
AAAAaacattgtttaaaattttcactgtTATAAGACTCTATGTAAGATCA
AATCCACCCTCataaaaaaaggggaaaaactggcaaaaaaaacatttttg
gtgtTATAATGTAACAGAGTAATAACGATCaactattttaatttatttca
gtgAATAGTTGGTTAGAAACGCTTCTTAActttgtcaaaacaaaaaaaag
aagaagtcaTGGTTCGAAAGATCAAGATCCTGCCAAGAAGATTGGGATTT
GCTGAGGAAGAATATTTGGAGGACAGTGCAGGATAGGGAAGTTTTGGATG
AACATTGTAATGTGTGTTGTGATCGACTTGGTGATCTTTATTGCATGGAT
TGTCACAAATCATTTTGTCATGTATGTGACGATGTCNN

Coding sequence (CDS) from alignment at scaffold_389:49590..56427+

>TCONS_00063416 ID=TCONS_00063416|Name=TCONS_00063416|organism=Clytia hemisphaerica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_389:49590..56427+ (Clytia hemisphaerica)
ATGGCAGAAAATAATGATGGTGAGCAGCAGTGTTCCTCACAGCCATCACA
GTCAAAGCGACCAAGAAAGACAAGTCAAAGGATCTACAAGCTGAAGAGAC
CAAAACATAACAATGGAATGAAAAGAAGAATATCAAATACTGTAATCACT
GCAGATGAGCAAGTTTTGGATATTgatgcaaaaaattcaaactggcAAAT
TGCAGAAAATCTGGACACCATCGATAATGAAGAATTAAATGACATAAATC
CACAAAGTGATACAAAAAtgAATAGTTGGTTAGAAACGCTTCTTAActtt
gtcaaaacaaaaaaaagaagaagtcaTGGTTCGAAAGATCAAGATCCTGC
CAAGAAGATTGGGATTTGCTGAATGGCAGAAAATAATGATGGTGAGCAGC
AGTGTTCCTCACAGCCATCACAGTCAAAGCGACCAAGAAAGACAAGTCAA
AGGATCTACAAGCTGAAGAGACCAAAACATAACAATGGAATGAAAAGAAG
AATATCAAATACTGTAATCACTGCAGATGAGCAAGTTTTGGATATTgatg
caaaaaattcaaactggcAAATTGCAGAAAATCTGGACACCATCGATAAT
GAAGAATTAAATGACATAAATCCACAAAGTGATACAAAAAtgAATAGTTG
GTTAGAAACGCTTCTTAActttgtcaaaacaaaaaaaagaagaagtcaTG
GTTCGAAAGATCAAGATCCTGCCAAGAAGATTGGGATTTGCTGAATGGCA
GAAAATAATGATGGTGAGCAGCAGTGTTCCTCACAGCCATCACAGTCAAA
GCGACCAAGAAAGACAAGTCAAAGGATCTACAAGCTGAAGAGACCAAAAC
ATAACAATGGAATGAAAAGAAGAATATCAAATACTGTAATCACTGCAGAT
GAGCAAGTTTTGGATATTgatgcaaaaaattcaaactggcAAATTGCAGA
AAATCTGGACACCATCGATAATGAAGAATTAAATGACATAAATCCACAAA
GTGATACAAAAAtgAATAGTTGGTTAGAAACGCTTCTTAActttgtcaaa
acaaaaaaaagaagaagtcaTGGTTCGAAAGATCAAGATCCTGCCAAGAA
GATTGGGATTTGCTGAATGGCAGAAAATAATGATGGTGAGCAGCAGTGTT
CCTCACAGCCATCACAGTCAAAGCGACCAAGAAAGACAAGTCAAAGGATC
TACAAGCTGAAGAGACCAAAACATAACAATGGAATGAAAAGAAGAATATC
AAATACTGTAATCACTGCAGATGAGCAAGTTTTGGATATTgatgcaaaaa
attcaaactggcAAATTGCAGAAAATCTGGACACCATCGATAATGAAGAA
TTAAATGACATAAATCCACAAAGTGATACAAAAAtgAATAGTTGGTTAGA
AACGCTTCTTAActttgtcaaaacaaaaaaaagaagaagtcaTGGTTCGA
AAGATCAAGATCCTGCCAAGAAGATTGGGATTTGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039747XLOC_039747Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063416-exon-scaffold_389-1491911889:49590..49825TCONS_00063416-exon-scaffold_389-1491911889:49590..49825Clytia hemisphaericaexon
TCONS_00063416-exon-scaffold_389-1510915933:49590..49825TCONS_00063416-exon-scaffold_389-1510915933:49590..49825Clytia hemisphaericaexon
TCONS_00063416-exon-scaffold_389-1575043694:49590..49825TCONS_00063416-exon-scaffold_389-1575043694:49590..49825Clytia hemisphaericaexon
TCONS_00063416-exon-scaffold_389-1491911889:55690..55758TCONS_00063416-exon-scaffold_389-1491911889:55690..55758Clytia hemisphaericaexon
TCONS_00063416-exon-scaffold_389-1510915933:55690..55758TCONS_00063416-exon-scaffold_389-1510915933:55690..55758Clytia hemisphaericaexon
TCONS_00063416-exon-scaffold_389-1575043694:55690..55758TCONS_00063416-exon-scaffold_389-1575043694:55690..55758Clytia hemisphaericaexon
TCONS_00063416-exon-scaffold_389-1491911889:55876..56001TCONS_00063416-exon-scaffold_389-1491911889:55876..56001Clytia hemisphaericaexon
TCONS_00063416-exon-scaffold_389-1510915933:55876..56001TCONS_00063416-exon-scaffold_389-1510915933:55876..56001Clytia hemisphaericaexon
TCONS_00063416-exon-scaffold_389-1575043694:55876..56001TCONS_00063416-exon-scaffold_389-1575043694:55876..56001Clytia hemisphaericaexon
TCONS_00063416-exon-scaffold_389-1491911889:56191..56427TCONS_00063416-exon-scaffold_389-1491911889:56191..56427Clytia hemisphaericaexon
TCONS_00063416-exon-scaffold_389-1510915933:56191..56427TCONS_00063416-exon-scaffold_389-1510915933:56191..56427Clytia hemisphaericaexon
TCONS_00063416-exon-scaffold_389-1575043694:56191..56427TCONS_00063416-exon-scaffold_389-1575043694:56191..56427Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063416-proteinTCONS_00063416-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_389supercontigscaffold_389:49590..56427 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.09617	8.27118	2.99017	0.905128	35.318	25.5275	33.2828	30.7387	28.1321	32.2263	33.0313	27.0422	26.0302	22.554	24.0807	23.0139	25.6059	29.7111	22.439	34.5537	39.8219	35.7385	15.9887	24.1471	24.5245	26.8932	58.9216	42.6277	34.4032	34.5822
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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