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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063418 ID=TCONS_00063418|Name=TCONS_00063418|organism=Clytia hemisphaerica|type=transcript|length=1836bp
ggcggtttttttttactcaaaatctcccgtttcaaaagttttgattaCCT
TATTATGAATCTGTTTATCTTATCACGCTAGGCGAACATATTTTTTCCGC
GGCccaaaacttttttatcaaatagaAACCGTATTCAATGTTTTTGGAGA
AGCGCGTTGGAATATAGTTGGAATGGTTTTTGTATGCAATAGTTTTCCTA
AACCTCCTCTAGAAAATCCAGCGTGGTCTCAAATTCTCTTTTTTGCAGAA
GACAGTTTGTGGTCAAGTTAATGTTGTTTTGTGGCTTTTAATCTATTTAA
TTTAAAATACTTATTTATACTGGACATGGAGAGGAAAAATGAATTTTGGA
CTCCTCAAGAAAAAAAAGTCGAGAGTCTTCAAGAAAAATGGTTCAAAGAA
GACATATTGAAAGACAATAAATGTGTTGTAAGTTTTTGgttgaatttttc
atttatatatGTGGCCAATAGCAAGAGTAGGGATGGGTGGGAAACACTAA
ATTTCTTTGTATATTTCACTATTCTGACTCCTTCTACTCTGACAACAAAA
GTAACAAAACAGCCATGGAATCAGTCACAGAAGTTTGTTGTCCAAATGGA
CTTCTCCTATCCTGCTTTATGTgaattatttataattttttccaatgTCC
TCATCTATTATTTTCATGAGATTTGTTAGGTAACGTAATTGCTTAGACAG
AAgtttttggctaaaatttttggcaaattttcgtAAGGCTTGATGACTGT
TCGGTGATACCAGAcgatgaatttaagtaattccACCAGCAATAATTATT
CGCATACCTAATTTCACCAGCCTAAATTAGGATACCTCCATACTTCAGTG
GATGCAAGTAAAACCAGCGGGAAATTGGGTATTAAGATTTGTTCAAATTG
GCACGCTAACAACTCTCTCGAAGTAGCACACAGTATTGTTGGAAATTTTC
CTGCGCGGTGTGCTATAAAGTATTTCTACAACTTGAGGTTTTAATTTTCC
GTAATACTGAACAAATGATTTCCGGCCCATGTCTTGGGGTAAGTAATTTA
TGCTGGTGGAATTATTTAATTCAATAGACCGTTGCGGTCGCCTAAAGGAC
TATAAAACCTTCTAAAAATTCATGTGGGACAATTTTAAATAACTAATTTA
AGCTTTAAGAATGATTTTTATTGatctttttttcacttttaattCTACAG
CTCAATTACAAAGGAACATCCAAGATGGAAAGTGGAATCGAACGCATGTT
AGGACACAAATTGTTACTGGGTGGCCCACTCATGGACCAGTATCTTGAGC
ACATTGGCCatgcaattttgaaaaaactttcgcaAAAACATTTGACTGGT
TATGTACTacctttaaaggttttcatTCCTAATCAGATTTTTTTGATACT
GATGCGTCTTTTTGTGGCATATGGTTGCGAATCTCAAGATGTATATCCAA
AGGTGAGAAAGAGTTTGACAAGACCCAAACGGAAATTACGAAAAGTTGCT
TTGAACAAGCCTCCGACCAAATCTTTTATTTGGATGAACTCAATGCAAAG
TTGTGAAAAAATCTTTGCTCCAGAAAGATTTGATGGTACAAACTTTTTAG
CCAAAAGGGTTTTTGCTCGAAAATTGTTACCTGGACAAAAGAAACAGCAA
CAAGTGTACAATGGTAAAGCAGTGGTAGTTGTTACATCTTCTACCCCGAT
CAAACTTGAATACATTTATAAAACTGGTATGTTGGCTGTATCATTCACTA
TCCAAAGATACAGTGCAGATGGTATAGCTCATGACTCAAAAGTTCAGGCT
GAAGTTAATAGTGCAGATGATTAAACCTTTTAATAG Run BLAST on NCBI transcript from alignment at scaffold_389:62332..64167+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063418 ID=TCONS_00063418|Name=TCONS_00063418|organism=Clytia hemisphaerica|type=transcript|length=1836bp|location=Sequence derived from alignment at scaffold_389:62332..64167+ (Clytia hemisphaerica)
ggcggtttttttttactcaaaatctcccgtttcaaaagttttgattaCCT
TATTATGAATCTGTTTATCTTATCACGCTAGGCGAACATATTTTTTCCGC
GGCccaaaacttttttatcaaatagaAACCGTATTCAATGTTTTTGGAGA
AGCGCGTTGGAATATAGTTGGAATGGTTTTTGTATGCAATAGTTTTCCTA
AACCTCCTCTAGAAAATCCAGCGTGGTCTCAAATTCTCTTTTTTGCAGAA
GACAGTTTGTGGTCAAGTTAATGTTGTTTTGTGGCTTTTAATCTATTTAA
TTTAAAATACTTATTTATACTGGACATGGAGAGGAAAAATGAATTTTGGA
CTCCTCAAGAAAAAAAAGTCGAGAGTCTTCAAGAAAAATGGTTCAAAGAA
GACATATTGAAAGACAATAAATGTGTTGTAAGTTTTTGgttgaatttttc
atttatatatGTGGCCAATAGCAAGAGTAGGGATGGGTGGGAAACACTAA
ATTTCTTTGTATATTTCACTATTCTGACTCCTTCTACTCTGACAACAAAA
GTAACAAAACAGCCATGGAATCAGTCACAGAAGTTTGTTGTCCAAATGGA
CTTCTCCTATCCTGCTTTATGTgaattatttataattttttccaatgTCC
TCATCTATTATTTTCATGAGATTTGTTAGGTAACGTAATTGCTTAGACAG
AAgtttttggctaaaatttttggcaaattttcgtAAGGCTTGATGACTGT
TCGGTGATACCAGAcgatgaatttaagtaattccACCAGCAATAATTATT
CGCATACCTAATTTCACCAGCCTAAATTAGGATACCTCCATACTTCAGTG
GATGCAAGTAAAACCAGCGGGAAATTGGGTATTAAGATTTGTTCAAATTG
GCACGCTAACAACTCTCTCGAAGTAGCACACAGTATTGTTGGAAATTTTC
CTGCGCGGTGTGCTATAAAGTATTTCTACAACTTGAGGTTTTAATTTTCC
GTAATACTGAACAAATGATTTCCGGCCCATGTCTTGGGGTAAGTAATTTA
TGCTGGTGGAATTATTTAATTCAATAGACCGTTGCGGTCGCCTAAAGGAC
TATAAAACCTTCTAAAAATTCATGTGGGACAATTTTAAATAACTAATTTA
AGCTTTAAGAATGATTTTTATTGatctttttttcacttttaattCTACAG
CTCAATTACAAAGGAACATCCAAGATGGAAAGTGGAATCGAACGCATGTT
AGGACACAAATTGTTACTGGGTGGCCCACTCATGGACCAGTATCTTGAGC
ACATTGGCCatgcaattttgaaaaaactttcgcaAAAACATTTGACTGGT
TATGTACTacctttaaaggttttcatTCCTAATCAGATTTTTTTGATACT
GATGCGTCTTTTTGTGGCATATGGTTGCGAATCTCAAGATGTATATCCAA
AGGTGAGAAAGAGTTTGACAAGACCCAAACGGAAATTACGAAAAGTTGCT
TTGAACAAGCCTCCGACCAAATCTTTTATTTGGATGAACTCAATGCAAAG
TTGTGAAAAAATCTTTGCTCCAGAAAGATTTGATGGTACAAACTTTTTAG
CCAAAAGGGTTTTTGCTCGAAAATTGTTACCTGGACAAAAGAAACAGCAA
CAAGTGTACAATGGTAAAGCAGTGGTAGTTGTTACATCTTCTACCCCGAT
CAAACTTGAATACATTTATAAAACTGGTATGTTGGCTGTATCATTCACTA
TCCAAAGATACAGTGCAGATGGTATAGCTCATGACTCAAAAGTTCAGGCT
GAAGTTAATAGTGCAGATGATTAAACCTTTTAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063418-exon-scaffold_389-1491911889:62332..64167 | TCONS_00063418-exon-scaffold_389-1491911889:62332..64167 | Clytia hemisphaerica | exon |
| TCONS_00063418-exon-scaffold_389-1510915933:62332..64167 | TCONS_00063418-exon-scaffold_389-1510915933:62332..64167 | Clytia hemisphaerica | exon |
| TCONS_00063418-exon-scaffold_389-1575043694:62332..64167 | TCONS_00063418-exon-scaffold_389-1575043694:62332..64167 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_389 | supercontig | scaffold_389:62332..64167 + |
Blast
The following BLAST results are available for this feature:
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