TCONS_00063506 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00063506
Unique Name	TCONS_00063506
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	864

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_391:66156..70062+

transcript sequence

>TCONS_00063506 ID=TCONS_00063506|Name=TCONS_00063506|organism=Clytia hemisphaerica|type=transcript|length=864bp
TAGATAGATATTACtgaattatacatttttgaCTTACAACGATGGAAGAC
TCACCTAAAAGGGAAATTAAGCAAGGTCGAAGAGCTGGGAATTTGTTTCA
AACAGCAGGCTCAAATGCATCAACGAATGAAAGTAACAACAATGCAATTA
AAACAGAGGCATCTTCATCACTGTCACCGAAACCAGCACGAAAGCAGGGA
GGATGGGCGGATgatataaaagaaaagaaaagaggtgATGAAGGCAGTGA
TAACGAGCAAGATGATGAAGGgaaatttggaagaatgttGGAAGAAGAAG
ACGAGCGATTGAAACAAGATGCGACAGTAGTTTTGGATAATGATGGTGAT
GACATTCCAATCATCCCTGAACTTGATGACGTCACTGAAGATGACATGGC
TTCACAAGTCGCTGCACCTCCGAGTGTGCTGGTCACAAGGATTGCAACCT
ACAAAGAACTTGATCATGATTTCGAAAAACATACAGGACTTTTGACATTG
GACGGTGATATTGATCTCAAATTATTGGGAAATGTTCTTGCACCAGAATC
TGAAATACAAGAGGCTGACAAGGCATGGAATTGGGATCGTGTTTTTACTG
AGGTATCATCCGAATTGCGTTCTGAATGGGAACAAACCAAATCACTAACA
TCCAGCAACAAAGATTAAATCTGATTATAACTTTGCATACACAAAAGGCT
TGGCTTCTGGTACCTCTTCGCAGGCCTTTGTCGATGCTCTAAGGAGTAGA
AGATAGGCATTTAAATTATTATCATTTTTAGCGCACAATATGTACATATA
ATAATGTAAATAATGGAAACAAATTTTaccatcaaaatattcaaagcAAC
TTTACTATCACAac

Run BLAST on NCBI

transcript from alignment at scaffold_391:66156..70062+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00063506 ID=TCONS_00063506|Name=TCONS_00063506|organism=Clytia hemisphaerica|type=transcript|length=3907bp|location=Sequence derived from alignment at scaffold_391:66156..70062+ (Clytia hemisphaerica)
TAGATAGATATTACtgaattatacatttttgaCTTACAACGATGGAAGAC
TCACCTAAAAGGGTATGTATTCTTTGATACACTATTAACCCTAATAATGG
CAAGGGGCGTTGTACACCTTTTTAAGCCTCTTAGGAAAACTTGCCAGTTG
TTGCACACTAGGTCAGGTTTTGTTACTTCACTGTAAGTGCATGTCAATAA
ATGCAAATAAATGGTGTAAAACTGCAAAATCTTAAAGTATctataatttt
taaaacctgGTCTAAATAATTTCGTTTCGACAGGATTTATAAATAATATA
ACTTAATGattaatgattaaaaaaatcttcaaatatgaTTATTCGACGAA
GTTTTACTTTTGATCTGTAAATActaatttttgcttttattttttaatgg
tttttctTCTTAATTACTTCATTAGGAAATTAAGCAAGGTCGAAGAGCTG
GGAATTTGTTTCAAACAGCAGGCTCAAATGCATCAACGAATGAAAGTAAC
AACAATGCAATTAAAACAGAGGTAAGTGAAGTTTTCTCAAAAACTCTACG
ATCCCACAGGAGCCACAAATAATCAATTTAAGGTTCAGAAGTAGGAACAA
ATTTGGACTAAATTTGATTGACCAAATCTGATAGATAACAGGAACTTTTT
GTTTGAAACAGAAAACGTTGCTTCGAAAATTGATAAATGAGGGTTGATTG
ATCACATTCGCTGATTTAGCTTTTTATAAGCACTGGACGGTTATTTCCTT
TGAACTCTGTATTATGTTTTATTTATCACATTGCTCATTGAACTTGGATG
TCAATTTTTTATCATCGTTTGTTTGGTTTATTTGTAAATCCTCATCTATT
AGTTAAAATCAGCCCAAACACAAATTTAACACTCtcttcgaaaataattt
ttcttgaaattattAGGCATCTTCATCACTGTCACCGAAACCAGCACGAA
AGCAGGGAGGATGGGCGGATgatataaaagaaaagaaaagagggtaatta
aaagtgaatttttttattcgtTTGAGCACAGCCTTTTTGACCCTATCGAA
TTTAAAGGTTTGATCGAAATTACCACAAGAATTTAATTATTTTCCTATTA
AGCTGGATGCCTAATTTCAAATACCTACATAAACAAAAATCTAGTCATAT
GCTTGGATATATAATAAATATTGTTCTTTTTAGCATGGCAGCAAGAAAAT
AAGCGAAGCGATAAATAACGTGATcgcttttatttttatgtttttttatt
tctatatcgcaaatcaaaaataaaagatatttattttattcCAGACATGC
CCTTCCAGCACCCCCTccccaaaattttgaaatcttcatccaattgactt
gaaatttttcaagtgtgcaccaaatatgaattgtcatctttggtgaaaat
tttagCATCACCGATGACATCATTGCCACTTgatgacgtcttcatttttt
gataagcaaaaaAGGACCccctctaactttttttcactttaatatttttt
gctcaaatatTGAGCAACTCCACGAGGCATTTATTTTTGGGGCAcatggt
aattttttttccacCTGCCGGTatggtgtattttacagaccggtccaaAA
TTACCCTTTTTGCCTAAATCAGCCCTAGGATACATGTCTAGTCTACATGC
CATGTCTAGTGATTGGAAGATGCTGTTTAATCCTGTTTGGAACATGGATT
GATAATAAACTAGTTGTTAACATAAAAGTATCATAAAAGAggattaaaaa
tgtttattttttagtgATGAAGGCAGTGATAACGAGCAAGATGATGAAGG
GTAATCAAAATTAAACATAAACCACTAAATTTTAAATATATTCGATAAAA
TTGTTTAAGTAAACTTAACTCCAGACACCAGGATAAAAATTAAAACCATA
GTCAGAGttgctttgttttgttttcatctCTTAACAAATATCTCTACTAC
CAGTGAAACCTCTAGCAAGGATAAAAAGTTTGTTGCTCTCTTCTTCACCA
CTcgtgattatcttttcaacggttgATTAAGGTATTTGTTAAGAAAAGAC
AGGCAAACCTTAAATTATTGCACACCTATCGTGAATTGAATAGACAAATA
TACTATAATAATTAATATCTAATGATGGTTTAGAATAAATTGAATAACTT
AGGAGAATTTATAAGCATTTTAAATTAAAGATTTTAATCCCTTAAAAACG
TTATTCTCGCTAAAGaccttggtaatggtttggGAAACTAAGACATATTT
TATTTActatgaattttattttgtaggaaatttggaagaatgttGGAAGA
AGAAGAGTAAGTTTTTAGTTTAATCAATAGATCCATGTAGAAAACGCTCC
TGTAAATCCATACTTTCACCTCCGAGCTCCCCTCTGTCACGATTTGGGAC
CATTCTACTTATCATCACTAAAGTTCATTCGCTTGCTTGCCCTTCCTCAA
ACAATGCTTCGATCGTAAAACAAGAATTAGTGCACACTAAATATAAGATA
TATCAAAGTGAATATACGATTCTGACTAAAACCTTCAGAACTGAAAGATA
TACCATGAAGGTAAGCTACTAAActgatgaaaaatattttacactaAAAC
ATTTACATTAAAAAAGTCGGTAGAAGAATGTAGGATgttttttctgagtt
tttttACTGAGTTTTTCTTTATCCACACATCCAGCGAGCGATTGAAACAA
GATGCGACAGTAGTTTTGGATAATGATGGTGATGACATTCCAATCATCCC
TGAACTTGATGACGTCACTGAAGATGACATGGCTTCACAAGTCGCTGCAC
CTCCGAGGTTTGCGTAATGCGTGCACTTCGTTCAAGGTCGTATtgaatac
agtagagtctctcgAACCTCAACTCaaatgtctctttaactcaaacaagt
ttcGCCATCCCCTCTTTTAACAAAGCCTTATAAACCAATCTCCATTACTT
GAAGTTCACTCACTTCACTCGAACAAAAATTTGTGTTCCCTTGTTATTGA
GACGCCACTGTATCAAAGAACGTTCAGAATCGACAATCTCCATTTCGTAA
CCAACACCGATATTAAAATCACCTATCTTTGTCTGATTAAATGTTTCGTA
TAGGAAAGCTTTCTCTTCCTATACTATAAATTAAATTCCAGTGAAATTTA
GTTTTCCAATGAATTACTTCCAAACTAATTGTTTTATATAGTGTGCTGGT
CACAAGGATTGCAACCTACAAAGAACTTGATCATGATTTCGAAAAACATA
CAGGACTTTTGACATTGGTATGTAGTTGCTTATTGTAAATCAAGTAAAAG
TTCGTTATTATCTTTGGAGATCAAGAAATATATCAAGGGATGAAGTCATA
TTATATTCTTTACTTTGGAGCCTTGATAATTAGATGTTGCTCTTAATGCT
GCATGTTATACTTTTCCATATGCATTTATGAATATTGATTGAAATTTTAG
GACGGTGATATTGATCTCAAATTATTGGGAAATGTTCTTGCACCAGAATC
TGAAATACAAGAGGTAACTTACAATTCttcgattattttttttttcaata
gaacAGAAGAGGGAAAGAGGTGAGAGGTCTTTCATTTAATTTCTTCCCGT
CTTTAGGCTGACAAGGCATGGAATTGGGATCGTGTTTTTACTGAGGTATC
ATCCGAATTGCGTTCTGAATGGGAACAAACCAAATCACTAACATCCAGCA
ACAAAGATTAAATCTGATTATAACTTTGCATACACAAAAGGCTTGGCTTC
TGGTACCTCTTCGCAGGCCTTTGTCGATGCTCTAAGGAGTAGAAGATAGG
CATTTAAATTATTATCATTTTTAGCGCACAATATGTACATATAATAATGT
AAATAATGGAAACAAATTTTaccatcaaaatattcaaagcAACTTTACTA
TCACAac

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039811	XLOC_039811	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_391	supercontig	scaffold_391:66156..70062 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.12798	0.519269	0.428551	3.41955	3.34714	2.92093	2.67038	4.20219	2.29631	3.68484	2.14929	6.66285	6.68947	1.43813	4.1289	3.44305	1.38964	1.78277	3.53175	2.25047	3.31822	3.48022	2.24806	2.69585	5.69155	0	0	0	0

Blast

[Close]

BLAST of TCONS_00063506 vs. Swiss-Prot (Human)
Match: IFT43 (Intraflagellar transport protein 43 homolog OS=Homo sapiens GN=IFT43 PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 1.819e-26
Identity = 79/189 (41.80%), Postives = 113/189 (59.79%), Query Frame = 3

Query:   69 KQGRRAGNLFQTXXXXXXXXXXXXXXIKTEASSSLSPKPARKQGGWA-DDIKEKKRGDEGSDNEQDDEGKFGRMLEEEDERLKQDATVVLDNDGDDIPIIPELDDVTEDDMASQVAAPPSVLVTRIATYKELDHDFEKHTXXXXXXXXXXXXXXXNVLAPESEIQEADKAWNWDRVFTEVSSELRSEWE 632
            K GRRA    Q +    +     N+++     +S +  P  +QGGWA D +K  K   + S+             E ED RL+  +    D  GD IPIIP+L++V E+D   QVAAPPS+ + R+ TY++LD+D  K++ + TLDG+IDLKLL  VLAPE E++E D  W+WD +FTEVSSE+ +EW+
Sbjct:   21 KMGRRAQ---QESAQAENHLNGKNSSLTLTGETSSAKLPRCRQGGWAGDSVKASKFRRKASE-------------EIEDFRLRPQSLNGSDYGGD-IPIIPDLEEVQEEDFVLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLFTEVSSEVLTEWD 192

The following BLAST results are available for this feature:

BLAST of TCONS_00063506 vs. Swiss-Prot (Human)

BLAST of TCONS_00063506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IFT43	1.819e-26	41.80	Intraflagellar transport protein 43 homolog OS=Hom...	[more]

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TCONS_00063506 (transcript) - C. hemisphaerica