TCONS_00063661 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063661
Unique NameTCONS_00063661
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063661 ID=TCONS_00063661|Name=TCONS_00063661|organism=Clytia hemisphaerica|type=transcript|length=453bp
GAAAAATACTGTCTTTTATTGTGAGAAATCTACCTTTCCCTGTATTTCCT
AATATGATAGATATTGCTTTCGTGTGTACTGAAAATTTACAACGGTTCAA
CTGGATATCAACGTGGTTACTTGCTTTCGTTTCGACTTGTAGGAAATTGG
TATTCAGATGGATTGTTCTGATCATTGAGTCTTGGATATCAAAAACCATG
TTGAtgctttgaattttgaaatggatattttcaaaatcaactgattgtga
ttgaaaaaagttttgggATCCTTTGTgactttgaaatgaaaaaatacatc
TCTCTGTTGCAATGATTAACGGCTTGATTGTTGATGGAGATTGTAGTTTG
ATTCTTAACGAGGCGAGAAACGTTATAGTTGGTTTTGCCATCTCATATTG
AACTTTTTCTTGAGAGCTTCCGAACAGATGTAGATCTAAATGCTGATTGA
TAT
Run BLAST on NCBI

protein sequence of TCONS_00063661-protein

>TCONS_00063661-protein ID=TCONS_00063661-protein|Name=TCONS_00063661-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
INQHLDLHLFGSSQEKVQYEMAKPTITFLASLRIKLQSPSTIKPLIIATE
RCIFSFQSHKGSQNFFQSQSVDFENIHFKIQSINMVFDIQDSMIRTIHLN
TNFLQVETKASNHVDIQLNRCKFSVHTKAISIILGNTGKGRFLTIKDSIF
Run BLAST on NCBI

transcript from alignment at scaffold_397:74193..74645

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063661 ID=TCONS_00063661|Name=TCONS_00063661|organism=Clytia hemisphaerica|type=transcript|length=453bp|location=Sequence derived from alignment at scaffold_397:74193..74645 (Clytia hemisphaerica)
ATATCAATCAGCATTTAGATCTACATCTGTTCGGAAGCTCTCAAGAAAAA
GTTCAATATGAGATGGCAAAACCAACTATAACGTTTCTCGCCTCGTTAAG
AATCAAACTACAATCTCCATCAACAATCAAGCCGTTAATCATTGCAACAG
AGAgatgtattttttcatttcaaagtcACAAAGGATcccaaaactttttt
caatcacaatcagttgattttgaaaatatccatttcaaaattcaaagcaT
CAACATGGTTTTTGATATCCAAGACTCAATGATCAGAACAATCCATCTGA
ATACCAATTTCCTACAAGTCGAAACGAAAGCAAGTAACCACGTTGATATC
CAGTTGAACCGTTGTAAATTTTCAGTACACACGAAAGCAATATCTATCAT
ATTAGGAAATACAGGGAAAGGTAGATTTCTCACAATAAAAGACAGTATTT
TTC

Coding sequence (CDS) from alignment at scaffold_397:74193..74645

>TCONS_00063661 ID=TCONS_00063661|Name=TCONS_00063661|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_397:74193..74645 (Clytia hemisphaerica)
ATCAATCAGCATTTAGATCTACATCTGTTCGGAAGCTCTCAAGAAAAAGT
TCAATATGAGATGGCAAAACCAACTATAACGTTTCTCGCCTCGTTAAGAA
TCAAACTACAATCTCCATCAACAATCAAGCCGTTAATCATTGCAACAGAG
AgatgtattttttcatttcaaagtcACAAAGGATcccaaaacttttttca
atcacaatcagttgattttgaaaatatccatttcaaaattcaaagcaTCA
ACATGGTTTTTGATATCCAAGACTCAATGATCAGAACAATCCATCTGAAT
ACCAATTTCCTACAAGTCGAAACGAAAGCAAGTAACCACGTTGATATCCA
GTTGAACCGTTGTAAATTTTCAGTACACACGAAAGCAATATCTATCATAT
TAGGAAATACAGGGAAAGGTAGATTTCTCACAATAAAAGACAGTATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039903XLOC_039903Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063661-proteinTCONS_00063661-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063661-exon-scaffold_397-1491911889:74193..74645TCONS_00063661-exon-scaffold_397-1491911889:74193..74645Clytia hemisphaericaexon
TCONS_00063661-exon-scaffold_397-1510915933:74193..74645TCONS_00063661-exon-scaffold_397-1510915933:74193..74645Clytia hemisphaericaexon
TCONS_00063661-exon-scaffold_397-1575043694:74193..74645TCONS_00063661-exon-scaffold_397-1575043694:74193..74645Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:74193..74645 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.141788	0.32926	0	0.196081	0.154946	0.560806	0	0.612631	0.151769	0	0.48418	0.773611	0.602552	0.49538	0.088603	0	0.223754	0	0.16174	0.140582	0.205712	0	0.151567	0	0.139325	0	0	0.161383	0.164424
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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