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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063700 ID=TCONS_00063700|Name=TCONS_00063700|organism=Clytia hemisphaerica|type=transcript|length=2298bp
ctTTTTTATAATACTAACTTTTGTGTCTCGCCTACTCCGATGTCTTTTAT
GTCCATGTAGATGGGATACATGTTGTATATGCCTCACTAAAGGCACAAAA
GCCATTCCTAAACATGCTGAACcaaaaagcaaaacaataaaCACATTTGG
TCGAGTTTTATACACGAGTAAAGACAGAAAGTATACAGCAAATTTCAACG
ATTGAAGAGAATAACCAACGAAAAAAATAATGGCGAGAATAATTTCAATC
ATGTCACTTATAAAGTATGGAATAGTTTTTTTGAGTATCGCGCTTAATTT
GATGTTTATGGCCAAATTGAAACAAGGAAATTCGAGCAAGAGCATCGTTC
ATTGTCAGGAGAAAGAAGATACTATATTTTACATTCAGAAATATATCACG
GAGTTGTTGGATGTGCGAGTTACCGTGCCCAAAAAGCACACTTTACGTCA
AATTGTAGATCAACATTTTAACAACGTGCAACAAATATTGAAGGatttaa
atttcaaagattttccagTTATCCATAATATACGAAAAATTGAATTACCA
AACAAACTACACCACTACGAAAAGATGAACAAAGCAACAAAGAACAGTAC
ATCTTTTCCTTGTCTTGAAGCATATTTGGGGTTTCCTTACGGAAACCCTT
TATACAATGAAGGTTTTCGTCGAACGAATTGTCAAAATATATCACAAAGA
TTGTCACTTGTCATAGATCGACCTATCATAGACTCGGTTGAAAATTTCCG
AAGGACATTATCATTTGCTAAAGGAAGGTTTAAAAAGATTCATATTGTAT
TACAATCATCAGACTATCGTTTAGTCAAAAGAACTATTCAGCAATGGATG
CCCAACGTAGCGATTCAACTTATTAAACAAGCTGACAATGTATCGTTGCA
TCTGAATAAAATTGTACAAAAGATAGATACTGAATATGTAGTGATAGCTT
CACAAGTTGTTTTAATAAATGAGCAGTTTGACATCATCAGAATGGTTCAA
GTCTACGAAAGTCTTAAACATGTGATCGTCGCTTCATCCATAAAGAATTA
CCAGTCAGGGAAATGGGAAACTGGTTGCTATCAAACTGCCTTGAAACCGT
ATAGACTAACCTACTGGTCTGGATATAGGGAATCACAAAAAAGTTGCCTC
AAATGTGACTTTGTTAAAGGAGCTTTTCTGTTGTCTCCTCAGATACTGAA
AAAAAACCCGTTTAGAGGAAGACAAATAGATACATTGTATGCAGATTTGT
TTCTCCGTCTtcaaaagcaaataaaaatttttacatGTCCTGATGTAATG
GTGTACATTAACAGCAAGGAACGATACGAAGCTGATGAGATAGGCGCGTT
CAATATGTTATGGAACTTCGAACAAATTCAATGGTATACATTACAAACAT
TTCAATTTCCATGTCCAGCCAATTTTAAAGGATTGGTTTCCAAATGTAGG
GTTGGAAAGGGTATGGCAGCTCCACCGTGCTGTTTAGAGATGCTCTATGA
TGGTATGGAATTTGTCACGGATTTATTTGACAGATATAGAATTCAATACA
TGCTGATTGAAGGATCTGTTCTGGGAGCTGTTAAGTTCAATGGGATATCG
AAGTGGGAGCAAGACGCAGATATTGCAatcaaatcaaaagactttactAG
ATTGTTGTTAGTGATGGATGACTTAAACGAAATGAATTATACGTTGGTCA
TTGACCAACCAGTCCAATGTTGCCATGGACATGTAAAATTCGGAGGAGTT
GCTCATATTCGAGTCTTTCACTGGAGCATACAAATATATGGATTCGATAG
TTTGGGCGAGGTTGAAGGCGCTCAAACAAATATTGAAATGGGTAACGGAA
ATCGGAAATCGTCATTTAACGCCAAAGTAGCAGAAAACCCTGGAAGGTAT
TCTCGCAACCGGTATGGAAGTGAAGTTTTCCAGCATGCAGAGCACTGGAT
GAAAACGGGAAAGAAAGATGGTTGGCAAGATTATGAGAGTGGAAAATTTG
AAGAGTGTTCGAAACCTGGTCATCATGCATGTCTCGATCAATTTGTTGCC
GATGGAAGTTTTCTTCGGGGAAAAATATAAGTACAAATAATATTCTTCCT
AAATATTGagatttaaacttttaaatatgTCTCGATTTTCTTTAATGTCT
TGATTTTCTTTACGTGCCTTTTCGGAAGAAAAACCAAAACTGTCTAAACT
TGCTAGACatgctactctcgggtaccaaATGGCCGGGGGGGGGGGCGCCG
CTAATTAATTTTTCAAAAATTTTCCACCCAGGACATTCTTATTCCAAC Run BLAST on NCBI protein sequence of TCONS_00063700-protein >TCONS_00063700-protein ID=TCONS_00063700-protein|Name=TCONS_00063700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=616bp
MARIISIMSLIKYGIVFLSIALNLMFMAKLKQGNSSKSIVHCQEKEDTIF
YIQKYITELLDVRVTVPKKHTLRQIVDQHFNNVQQILKDLNFKDFPVIHN
IRKIELPNKLHHYEKMNKATKNSTSFPCLEAYLGFPYGNPLYNEGFRRTN
CQNISQRLSLVIDRPIIDSVENFRRTLSFAKGRFKKIHIVLQSSDYRLVK
RTIQQWMPNVAIQLIKQADNVSLHLNKIVQKIDTEYVVIASQVVLINEQF
DIIRMVQVYESLKHVIVASSIKNYQSGKWETGCYQTALKPYRLTYWSGYR
ESQKSCLKCDFVKGAFLLSPQILKKNPFRGRQIDTLYADLFLRLQKQIKI
FTCPDVMVYINSKERYEADEIGAFNMLWNFEQIQWYTLQTFQFPCPANFK
GLVSKCRVGKGMAAPPCCLEMLYDGMEFVTDLFDRYRIQYMLIEGSVLGA
VKFNGISKWEQDADIAIKSKDFTRLLLVMDDLNEMNYTLVIDQPVQCCHG
HVKFGGVAHIRVFHWSIQIYGFDSLGEVEGAQTNIEMGNGNRKSSFNAKV
AENPGRYSRNRYGSEVFQHAEHWMKTGKKDGWQDYESGKFEECSKPGHHA
CLDQFVADGSFLRGKI Run BLAST on NCBI transcript from alignment at scaffold_398:36896..39193 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063700 ID=TCONS_00063700|Name=TCONS_00063700|organism=Clytia hemisphaerica|type=transcript|length=2298bp|location=Sequence derived from alignment at scaffold_398:36896..39193 (Clytia hemisphaerica)
GTTGGAATAAGAATGTCCTGGGTGGAAAATTTTTGAAAAATTAATTAGCG
GCGCCCCCCCCCCCGGCCATttggtacccgagagtagcatGTCTAGCAAG
TTTAGACAGTTTTGGTTTTTCTTCCGAAAAGGCACGTAAAGAAAATCAAG
ACATTAAAGAAAATCGAGAcatatttaaaagtttaaatctCAATATTTAG
GAAGAATATTATTTGTACTTATATTTTTCCCCGAAGAAAACTTCCATCGG
CAACAAATTGATCGAGACATGCATGATGACCAGGTTTCGAACACTCTTCA
AATTTTCCACTCTCATAATCTTGCCAACCATCTTTCTTTCCCGTTTTCAT
CCAGTGCTCTGCATGCTGGAAAACTTCACTTCCATACCGGTTGCGAGAAT
ACCTTCCAGGGTTTTCTGCTACTTTGGCGTTAAATGACGATTTCCGATTT
CCGTTACCCATTTCAATATTTGTTTGAGCGCCTTCAACCTCGCCCAAACT
ATCGAATCCATATATTTGTATGCTCCAGTGAAAGACTCGAATATGAGCAA
CTCCTCCGAATTTTACATGTCCATGGCAACATTGGACTGGTTGGTCAATG
ACCAACGTATAATTCATTTCGTTTAAGTCATCCATCACTAACAACAATCT
agtaaagtcttttgatttgatTGCAATATCTGCGTCTTGCTCCCACTTCG
ATATCCCATTGAACTTAACAGCTCCCAGAACAGATCCTTCAATCAGCATG
TATTGAATTCTATATCTGTCAAATAAATCCGTGACAAATTCCATACCATC
ATAGAGCATCTCTAAACAGCACGGTGGAGCTGCCATACCCTTTCCAACCC
TACATTTGGAAACCAATCCTTTAAAATTGGCTGGACATGGAAATTGAAAT
GTTTGTAATGTATACCATTGAATTTGTTCGAAGTTCCATAACATATTGAA
CGCGCCTATCTCATCAGCTTCGTATCGTTCCTTGCTGTTAATGTACACCA
TTACATCAGGACatgtaaaaatttttatttgcttttgaAGACGGAGAAAC
AAATCTGCATACAATGTATCTATTTGTCTTCCTCTAAACGGGTTTTTTTT
CAGTATCTGAGGAGACAACAGAAAAGCTCCTTTAACAAAGTCACATTTGA
GGCAACTTTTTTGTGATTCCCTATATCCAGACCAGTAGGTTAGTCTATAC
GGTTTCAAGGCAGTTTGATAGCAACCAGTTTCCCATTTCCCTGACTGGTA
ATTCTTTATGGATGAAGCGACGATCACATGTTTAAGACTTTCGTAGACTT
GAACCATTCTGATGATGTCAAACTGCTCATTTATTAAAACAACTTGTGAA
GCTATCACTACATATTCAGTATCTATCTTTTGTACAATTTTATTCAGATG
CAACGATACATTGTCAGCTTGTTTAATAAGTTGAATCGCTACGTTGGGCA
TCCATTGCTGAATAGTTCTTTTGACTAAACGATAGTCTGATGATTGTAAT
ACAATATGAATCTTTTTAAACCTTCCTTTAGCAAATGATAATGTCCTTCG
GAAATTTTCAACCGAGTCTATGATAGGTCGATCTATGACAAGTGACAATC
TTTGTGATATATTTTGACAATTCGTTCGACGAAAACCTTCATTGTATAAA
GGGTTTCCGTAAGGAAACCCCAAATATGCTTCAAGACAAGGAAAAGATGT
ACTGTTCTTTGTTGCTTTGTTCATCTTTTCGTAGTGGTGTAGTTTGTTTG
GTAATTCAATTTTTCGTATATTATGGATAActggaaaatctttgaaattt
aaatCCTTCAATATTTGTTGCACGTTGTTAAAATGTTGATCTACAATTTG
ACGTAAAGTGTGCTTTTTGGGCACGGTAACTCGCACATCCAACAACTCCG
TGATATATTTCTGAATGTAAAATATAGTATCTTCTTTCTCCTGACAATGA
ACGATGCTCTTGCTCGAATTTCCTTGTTTCAATTTGGCCATAAACATCAA
ATTAAGCGCGATACTCAAAAAAACTATTCCATACTTTATAAGTGACATGA
TTGAAATTATTCTCGCCATTATTTTTTTCGTTGGTTATTCTCTTCAATCG
TTGAAATTTGCTGTATACTTTCTGTCTTTACTCGTGTATAAAACTCGACC
AAATGTGtttattgttttgctttttgGTTCAGCATGTTTAGGAATGGCTT
TTGTGCCTTTAGTGAGGCATATACAACATGTATCCCATCTACATGGACAT
AAAAGACATCGGAGTAGGCGAGACACAAAAGTTAGTATTATAAAAAag Coding sequence (CDS) from alignment at scaffold_398:36896..39193 >TCONS_00063700 ID=TCONS_00063700|Name=TCONS_00063700|organism=Clytia hemisphaerica|type=CDS|length=1851bp|location=Sequence derived from alignment at scaffold_398:36896..39193 (Clytia hemisphaerica)
TTATATTTTTCCCCGAAGAAAACTTCCATCGGCAACAAATTGATCGAGAC
ATGCATGATGACCAGGTTTCGAACACTCTTCAAATTTTCCACTCTCATAA
TCTTGCCAACCATCTTTCTTTCCCGTTTTCATCCAGTGCTCTGCATGCTG
GAAAACTTCACTTCCATACCGGTTGCGAGAATACCTTCCAGGGTTTTCTG
CTACTTTGGCGTTAAATGACGATTTCCGATTTCCGTTACCCATTTCAATA
TTTGTTTGAGCGCCTTCAACCTCGCCCAAACTATCGAATCCATATATTTG
TATGCTCCAGTGAAAGACTCGAATATGAGCAACTCCTCCGAATTTTACAT
GTCCATGGCAACATTGGACTGGTTGGTCAATGACCAACGTATAATTCATT
TCGTTTAAGTCATCCATCACTAACAACAATCTagtaaagtcttttgattt
gatTGCAATATCTGCGTCTTGCTCCCACTTCGATATCCCATTGAACTTAA
CAGCTCCCAGAACAGATCCTTCAATCAGCATGTATTGAATTCTATATCTG
TCAAATAAATCCGTGACAAATTCCATACCATCATAGAGCATCTCTAAACA
GCACGGTGGAGCTGCCATACCCTTTCCAACCCTACATTTGGAAACCAATC
CTTTAAAATTGGCTGGACATGGAAATTGAAATGTTTGTAATGTATACCAT
TGAATTTGTTCGAAGTTCCATAACATATTGAACGCGCCTATCTCATCAGC
TTCGTATCGTTCCTTGCTGTTAATGTACACCATTACATCAGGACatgtaa
aaatttttatttgcttttgaAGACGGAGAAACAAATCTGCATACAATGTA
TCTATTTGTCTTCCTCTAAACGGGTTTTTTTTCAGTATCTGAGGAGACAA
CAGAAAAGCTCCTTTAACAAAGTCACATTTGAGGCAACTTTTTTGTGATT
CCCTATATCCAGACCAGTAGGTTAGTCTATACGGTTTCAAGGCAGTTTGA
TAGCAACCAGTTTCCCATTTCCCTGACTGGTAATTCTTTATGGATGAAGC
GACGATCACATGTTTAAGACTTTCGTAGACTTGAACCATTCTGATGATGT
CAAACTGCTCATTTATTAAAACAACTTGTGAAGCTATCACTACATATTCA
GTATCTATCTTTTGTACAATTTTATTCAGATGCAACGATACATTGTCAGC
TTGTTTAATAAGTTGAATCGCTACGTTGGGCATCCATTGCTGAATAGTTC
TTTTGACTAAACGATAGTCTGATGATTGTAATACAATATGAATCTTTTTA
AACCTTCCTTTAGCAAATGATAATGTCCTTCGGAAATTTTCAACCGAGTC
TATGATAGGTCGATCTATGACAAGTGACAATCTTTGTGATATATTTTGAC
AATTCGTTCGACGAAAACCTTCATTGTATAAAGGGTTTCCGTAAGGAAAC
CCCAAATATGCTTCAAGACAAGGAAAAGATGTACTGTTCTTTGTTGCTTT
GTTCATCTTTTCGTAGTGGTGTAGTTTGTTTGGTAATTCAATTTTTCGTA
TATTATGGATAActggaaaatctttgaaatttaaatCCTTCAATATTTGT
TGCACGTTGTTAAAATGTTGATCTACAATTTGACGTAAAGTGTGCTTTTT
GGGCACGGTAACTCGCACATCCAACAACTCCGTGATATATTTCTGAATGT
AAAATATAGTATCTTCTTTCTCCTGACAATGAACGATGCTCTTGCTCGAA
TTTCCTTGTTTCAATTTGGCCATAAACATCAAATTAAGCGCGATACTCAA
AAAAACTATTCCATACTTTATAAGTGACATGATTGAAATTATTCTCGCCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063700-exon-scaffold_398-1491911889:36896..39193 | TCONS_00063700-exon-scaffold_398-1491911889:36896..39193 | Clytia hemisphaerica | exon |
| TCONS_00063700-exon-scaffold_398-1510915933:36896..39193 | TCONS_00063700-exon-scaffold_398-1510915933:36896..39193 | Clytia hemisphaerica | exon |
| TCONS_00063700-exon-scaffold_398-1575043694:36896..39193 | TCONS_00063700-exon-scaffold_398-1575043694:36896..39193 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_398 | supercontig | scaffold_398:36896..39193 . |
Blast
The following BLAST results are available for this feature:
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