|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063767 ID=TCONS_00063767|Name=TCONS_00063767|organism=Clytia hemisphaerica|type=transcript|length=1310bp
TGAGTTTTTAAAACCTGAAGGGCTAGAATGGAATTTTTAGGCTTTCCCga
gaaaaaatttcatctctttCCTTTTTGGGATTTTAAACTCAATTGGGTCC
CCCTCTACATGATTCATTCCTTCAAGTGGTTATAAGCGTTTTATACGCCC
ATCCCAGGAAAAATATTTAACTGCAGCTGAAAACAAAAAGCGTGACGTAA
CCTTTTTCTTTGGGATGATATTTGTATGGTTTGGAAATCGAAAACgtatt
aaaaaagttaaatcatATAAAACAGTTCGATTGATTTTGCTTTGTAAGTT
GTCCTTAATAGGAGGTGTGTAGAAATTATCAAAAGATTAGGAAANATAAA
ACAGTTCGATTGATTTTGCTTTGTAAGTTGTCCTTAATAGGAGGTGTGTA
GAAATTATCAAAAGATTAGGAAAGCAGCATGAATGAGTCGATATGTCACG
ATCTCAGTAGTATCCTGCGCATGgaaatgaacaaaaatgaaaaaagcctA
TTTAAAACCAATCACTGCTACCcttctgaaacaaagaaaaacttctGACA
AAAGTGCATCTATGCGAGTTCGTAGAAAAGAATACGTCACCTCTCATTAC
ACACtatttttatgagaaaaaactttttagcaacaaaataaggctaaaaa
atgttaaaaatatattataacAGGCCATATTTCGGAAGGGCAGGGTGGCG
TCCGTTTGTGGCCAAAAAGGGAAATTTTTCTAGTGTATTTATGCTGAAAG
GGctgttttttatcaaaattttagtgatttcaggaggggcagtGTCTGAT
GACCGgacgctaaaagggcatgaaaaatatattataaaacattttgatac
aatttttacttttatacAAGAACGATGAAAATAACCACTATATCATACCA
CTGGAGACTTGGTTGGATATGACTGACATTTAGCATACTTGTTCCTTGGg
caaatatctgggggtgtttttttattttttcaaaattttcatttttaagg
gcgtggtcattCGAGTTTTAgctccaaaacgaggctgaaactttggggGT
AGGCTTGATACTTCAAAAATGATTGGGTTTCGGCTGAAATTTGGTCCACT
AGTtaattgggtgaatatctgaggatgtatttttcattttttgagaattt
tgattttggggACCTGGGgacaaattttcatcaaaatgaggCTTTTGTTA
TTACCTACGAATGATTCAAAAATACTGAAGTTGTGCCCATTGCGGTTAGC
ACGTTTGTCAGGTACAAAGAATATATCATAACATACAACTTTGTCGtatt
aagaaaattt Run BLAST on NCBI transcript from alignment at scaffold_40:52401..53710 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063767 ID=TCONS_00063767|Name=TCONS_00063767|organism=Clytia hemisphaerica|type=transcript|length=1310bp|location=Sequence derived from alignment at scaffold_40:52401..53710 (Clytia hemisphaerica)
aaattttcttaataCGACAAAGTTGTATGTTATGATATATTCTTTGTACC
TGACAAACGTGCTAACCGCAATGGGCACAACTTCAGTATTTTTGAATCAT
TCGTAGGTAATAACAAAAGcctcattttgatgaaaatttgtcCCCAGGTc
cccaaaatcaaaattctcaaaaaatgaaaaatacatcctcagatattcac
ccaattaACTAGTGGACCAAATTTCAGCCGAAACCCAATCATTTTTGAAG
TATCAAGCCTACccccaaagtttcagcctcgttttggagcTAAAACTCGa
atgaccacgcccttaaaaatgaaaattttgaaaaaataaaaaaacacccc
cagatatttgcCCAAGGAACAAGTATGCTAAATGTCAGTCATATCCAACC
AAGTCTCCAGTGGTATGATATAGTGGTTATTTTCATCGTTCTTgtataaa
agtaaaaattgtatcaaaatgttttataatatatttttcatgccctttta
gcgtcCGGTCATCAGACactgcccctcctgaaatcactaaaattttgata
aaaaacagCCCTTTCAGCATAAATACACTAGAAAAATTTCCCTTTTTGGC
CACAAACGGACGCCACCCTGCCCTTCCGAAATATGGCCTgttataatata
tttttaacattttttagccttattttgttgctaaaaagttttttctcata
aaaataGTGTGTAATGAGAGGTGACGTATTCTTTTCTACGAACTCGCATA
GATGCACTTTTGTCagaagtttttctttgtttcagaagGGTAGCAGTGAT
TGGTTTTAAATaggcttttttcatttttgttcatttcCATGCGCAGGATA
CTACTGAGATCGTGACATATCGACTCATTCATGCTGCTTTCCTAATCTTT
TGATAATTTCTACACACCTCCTATTAAGGACAACTTACAAAGCAAAATCA
ATCGAACTGTTTTATNTTTCCTAATCTTTTGATAATTTCTACACACCTCC
TATTAAGGACAACTTACAAAGCAAAATCAATCGAACTGTTTTATatgatt
taacttttttaatacGTTTTCGATTTCCAAACCATACAAATATCATCCCA
AAGAAAAAGGTTACGTCACGCTTTTTGTTTTCAGCTGCAGTTAAATATTT
TTCCTGGGATGGGCGTATAAAACGCTTATAACCACTTGAAGGAATGAATC
ATGTAGAGGGGGACCCAATTGAGTTTAAAATCCCAAAAAGGaaagagatg
aaattttttctcGGGAAAGCCTAAAAATTCCATTCTAGCCCTTCAGGTTT
TAAAAACTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063767-exon-scaffold_40-1491911889:52401..53710 | TCONS_00063767-exon-scaffold_40-1491911889:52401..53710 | Clytia hemisphaerica | exon |
| TCONS_00063767-exon-scaffold_40-1510915933:52401..53710 | TCONS_00063767-exon-scaffold_40-1510915933:52401..53710 | Clytia hemisphaerica | exon |
| TCONS_00063767-exon-scaffold_40-1575043694:52401..53710 | TCONS_00063767-exon-scaffold_40-1575043694:52401..53710 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_40 | supercontig | scaffold_40:52401..53710 . |
Blast
The following BLAST results are available for this feature:
|
