TCONS_00006372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006372
Unique NameTCONS_00006372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006372 ID=TCONS_00006372|Name=TCONS_00006372|organism=Clytia hemisphaerica|type=transcript|length=443bp
ACACGAATCTCGTACCAGTAATCAGAGATCTTTTACAAGTAAAGACGTAC
CTTGAAAAAGTAAATACGTATCTCGCACCAGTAAACAAGTATCCATTGAA
AGAAGAGAAACACGAATTTAATTCCCAGCATAAAGTTATCGAGTTATTGT
TACGAAGGTAACGTAAGACTTATTCATCACGATGACGAATCTATCAGAAG
AAGAATTTTATGTGAAAAGAAATCGATTTGTTGATATCATCATGAACTCT
ACGCAGCAAATGCAAAAAATCTATAGCAGAAAGGAAGACCTTGTGCAAAA
TGTATTATCCTATGGTTGTGAACGAGAAAGACTGCTGACAACTCTAGACG
ACTACGCAAGACTCTATTCCGATTGCGAAAGCCTGTTTACAAATGATCAT
GTTGAAGTCCGATTCGGTAAGAGTTTTATTGATGCTGCCCTCA
Run BLAST on NCBI

transcript from alignment at sc0000066:627314..627756

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006372 ID=TCONS_00006372|Name=TCONS_00006372|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at sc0000066:627314..627756 (Clytia hemisphaerica)
TGAGGGCAGCATCAATAAAACTCTTACCGAATCGGACTTCAACATGATCA
TTTGTAAACAGGCTTTCGCAATCGGAATAGAGTCTTGCGTAGTCGTCTAG
AGTTGTCAGCAGTCTTTCTCGTTCACAACCATAGGATAATACATTTTGCA
CAAGGTCTTCCTTTCTGCTATAGATTTTTTGCATTTGCTGCGTAGAGTTC
ATGATGATATCAACAAATCGATTTCTTTTCACATAAAATTCTTCTTCTGA
TAGATTCGTCATCGTGATGAATAAGTCTTACGTTACCTTCGTAACAATAA
CTCGATAACTTTATGCTGGGAATTAAATTCGTGTTTCTCTTCTTTCAATG
GATACTTGTTTACTGGTGCGAGATACGTATTTACTTTTTCAAGGTACGTC
TTTACTTGTAAAAGATCTCTGATTACTGGTACGAGATTCGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003645XLOC_003645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006372-exon-sc0000066-1491911889:627314..627756TCONS_00006372-exon-sc0000066-1491911889:627314..627756Clytia hemisphaericaexon
TCONS_00006372-exon-sc0000066-1510915933:627314..627756TCONS_00006372-exon-sc0000066-1510915933:627314..627756Clytia hemisphaericaexon
TCONS_00006372-exon-sc0000066-1575043694:627314..627756TCONS_00006372-exon-sc0000066-1575043694:627314..627756Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:627314..627756 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12528	0.882751	0.213677	0.835708	0.715677	0	0	0.840725	0.29126	0	0.865267	0.461611	0.818851	1.3476	0	0.44975	0.15465	0.233316	0	0	0.29173	0	0	0.657176	0	0	0.896959	1.00712	0.900903	1.2755
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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