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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064136 ID=TCONS_00064136|Name=TCONS_00064136|organism=Clytia hemisphaerica|type=transcript|length=938bp
TTTGATTCGATGCCAGGGAAtactattttttcaatttcggtTGTCTTTGA
ACTTTGATGCCATTTCCTTCGGGCAAATTCAAATTGTTTCGGGTAGActa
ctttagtttttctttcagAACTGTCTTTCGATAATAAAGGTTAGGCATCT
GCTAGCATTGACCCGTCTTACCTGTTGGAAGTTTTTAAAAAGCAAAGATT
ACAAGATTACAAGAAATTCACCTTGTATCAATCAGATCGATCGAACGCGA
TAAAAATGAAGCTCCTAACCTACGTGTTTACCATTCTTCTCCTATGCGTC
TCACGGAGCGAACAAAAATCAATCTATAGTAGTGGGACAGCAGAGACCGC
AGCGTACGAGCTGTGCGTCAGAGAATACCAGAAGCTTGGAAACGAATGTA
TTGGAGAGACTATCAATCTTCCAAAAGAGATCGTTGAGTTGGCTAGTAAT
GGCTGCAAGACTGATATGGCTGAGAAAATCAAGTCATGTGAAATGTGCTG
GAAAAACACACAGGCTAATGGTTGttttgcaaaaatcaaaaatacattCC
AACCTTCTTTATAATTCTATTAATGTGGTCCATCGAAacgttttcaaaga
atataatttattttaaaaataatatttcgtctcataaaatttttaatata
aatCTACGGTTGGGTCAACTTACAGCGAGTTCGACtgacaattcctgcat
taataacacgcatgcgtaatttgtcgttttagaccacatgtagttatttc
ccgtgataaacaaagagaaatgaattgctggtacagtcactttcggtcgg
ggttgcggacggcaaaatatgaaatttgtcgttcttttttgtcgtttttt
atgaaatttgtcgttctttttgtctatttttagtaatgcaggaattGTAA
GATAGAGCCTCTCTTATGTCATTTAATTAACGTTCGGT Run BLAST on NCBI protein sequence of TCONS_00064136-protein >TCONS_00064136-protein ID=TCONS_00064136-protein|Name=TCONS_00064136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MKLLTYVFTILLLCVSRSEQKSIYSSGTAETAAYELCVREYQKLGNECIG
ETINLPKEIVELASNGCKTDMAEKIKSCEMCWKNTQANGCFAKIKNTFQP
SL Run BLAST on NCBI transcript from alignment at scaffold_409:103030..104708+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064136 ID=TCONS_00064136|Name=TCONS_00064136|organism=Clytia hemisphaerica|type=transcript|length=1679bp|location=Sequence derived from alignment at scaffold_409:103030..104708+ (Clytia hemisphaerica)
TTTGATTCGATGCCAGGGAAtactattttttcaatttcggtTGTCTTTGA
ACTTTGATGCCATTTCCTTCGGGCAAATTCAAATTGTTTCGGGTAGActa
ctttagtttttctttcagAACTGTCTTTCGATAATAAAGGTTAGGCATCT
GCTAGCATTGACCCGTCTTACCTGTTGGAAGTTTTTAAAAAGCAAAGATT
ACAAGATTACAAGAAATTCACCTTGGTAAGTTTTTTTCTTGcctaattat
acgtttttttggGGAGGATATTGAGAATTTtatattaaatttttaagctt
tttcataaaacaaatcaatatctcttggaGAGTGGGGGTGCTGGTCCTTG
CTGAGTGTCGGGGATACTGTTCCGTTTTCCGTAGATGGTTGAAAAAATGG
ACTCTGATACGACATATTTCTTAACAACTTTAAAGAGATCAGGGATATCG
AAAAGGACTCCAAAACTTCTCAAAACTTTCTCAATCTGTTTTCCTCCCAA
ATTTCCCTAATTGGAACGAACTAATTCTGCTTTTTCATGCTCTACCTTGA
ACAGCACCACAACGCCATAGAATTGTTTTTGCAATTTCTATATTTCAAAT
TAGTTTCAACTTTTAAGTTTGTCTGTACActacccagtatctacggctaa
tttcaacaTTCATtaccgtagagggtctgttgtcattttcttttgtcatt
tgagatttttcaaacgacCGGCTATCCGATGTTATGGCGAGAGAGGGCAG
AGACAATGAGAGaggtgttgctatttataaatcatacttaaTCGCAGAGG
TCTCCATACGGGaatctttttatcaaacagacaatgtgcacagagtgtac
taggaagggataaacgtgagatacactctggtgcAGTGCACTCTTAAGTC
AGTGCTTGTATTAAGACTTACTACTATCCATTGAACCATTTTTTCTATGT
TTCTATCATATTGTAGTATCAATCAGATCGATCGAACGCGATAAAAATGA
AGCTCCTAACCTACGTGTTTACCATTCTTCTCCTATGCGTCTCACGGAGC
GAACAAAAATCAATCTATAGTAGTGGGACAGCAGAGACCGCAGCGTACGA
GCTGTGCGTCAGAGAATACCAGAAGCTTGGAAACGAATGTATTGGAGAGA
CTATCAATCTTCCAAAAGAGATCGTTGAGTTGGCTAGTAATGGCTGCAAG
ACTGATATGGCTGAGAAAATCAAGTCATGTGAAATGTGCTGGAAAAACAC
ACAGGCTAATGGTTGttttgcaaaaatcaaaaatacattCCAACCTTCTT
TATAATTCTATTAATGTGGTCCATCGAAacgttttcaaagaatataattt
attttaaaaataatatttcgtctcataaaatttttaatataaatCTACGG
TTGGGTCAACTTACAGCGAGTTCGACtgacaattcctgcattaataacac
gcatgcgtaatttgtcgttttagaccacatgtagttatttcccgtgataa
acaaagagaaatgaattgctggtacagtcactttcggtcggggttgcgga
cggcaaaatatgaaatttgtcgttcttttttgtcgttttttatgaaattt
gtcgttctttttgtctatttttagtaatgcaggaattGTAAGATAGAGCC
TCTCTTATGTCATTTAATTAACGTTCGGT Coding sequence (CDS) from alignment at scaffold_409:103030..104708+ >TCONS_00064136 ID=TCONS_00064136|Name=TCONS_00064136|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_409:103030..104708+ (Clytia hemisphaerica)
ATGAAGCTCCTAACCTACGTGTTTACCATTCTTCTCCTATGCGTCTCACG
GAGCGAACAAAAATCAATCTATAGTAGTGGGACAGCAGAGACCGCAGCGT
ACGAGCTGTGCGTCAGAGAATACCAGAAGCTTGGAAACGAATGTATTGGA
GAGACTATCAATCTTCCAAAAGAGATCGTTGAGTTGGCTAGTAATGGCTG
CAAGACTGATATGGCTGAGAAAATCAAGTCATGTGAAATGTGCTGGAAAA
ACACACAGGCTAATGGTTGttttgcaaaaatcaaaaatacattCCAACCT
TCTTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064136-exon-scaffold_409-1491911889:103030..103254 | TCONS_00064136-exon-scaffold_409-1491911889:103030..103254 | Clytia hemisphaerica | exon |
| TCONS_00064136-exon-scaffold_409-1510915933:103030..103254 | TCONS_00064136-exon-scaffold_409-1510915933:103030..103254 | Clytia hemisphaerica | exon |
| TCONS_00064136-exon-scaffold_409-1575043694:103030..103254 | TCONS_00064136-exon-scaffold_409-1575043694:103030..103254 | Clytia hemisphaerica | exon |
| TCONS_00064136-exon-scaffold_409-1491911889:103996..104708 | TCONS_00064136-exon-scaffold_409-1491911889:103996..104708 | Clytia hemisphaerica | exon |
| TCONS_00064136-exon-scaffold_409-1510915933:103996..104708 | TCONS_00064136-exon-scaffold_409-1510915933:103996..104708 | Clytia hemisphaerica | exon |
| TCONS_00064136-exon-scaffold_409-1575043694:103996..104708 | TCONS_00064136-exon-scaffold_409-1575043694:103996..104708 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_409 | supercontig | scaffold_409:103030..104708 + |
Blast
The following BLAST results are available for this feature:
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