TCONS_00064148 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064148
Unique NameTCONS_00064148
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064148 ID=TCONS_00064148|Name=TCONS_00064148|organism=Clytia hemisphaerica|type=transcript|length=512bp
NNGGTTACACATCAGgctagaaactacatcatagtacccttcatgttcag
tcatttgtttggtcgttttctgccggctaatgcgatctaaaaattatggt
aattttaagacatgcaaTAACTTACCCGAGCATGAAAAAGACTTTAGTCT
CTCATTtcttcatttccaaaacaattCTTACCCAGTCATGTAAACAGAGG
TGTTTGATTTGATTTACAAATGGGGTAAGTTCCCATCCATCCATAAAgtt
ttttagagtttttagATTAATATTTCACATATAATTTctcaatttaattt
atttttaattgtatGCTTTTTTACTATATATTATATTTCATGGAGATGGG
ATAGACTTTGAAAtagattttataaaaaatgaagaagagctTAATAAAGA
TGAATGCCTAGCAGTTGACTCTCACTGATACGAATTCACAGAAGgaatcg
aattacagagagtttAACGAAAGTTTTTATGCAGGTTTTAAAGTTCGTTC
ACGATTTTTGAA
Run BLAST on NCBI

transcript from alignment at scaffold_409:106325..106836

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064148 ID=TCONS_00064148|Name=TCONS_00064148|organism=Clytia hemisphaerica|type=transcript|length=512bp|location=Sequence derived from alignment at scaffold_409:106325..106836 (Clytia hemisphaerica)
TTCAAAAATCGTGAACGAACTTTAAAACCTGCATAAAAACTTTCGTTaaa
ctctctgtaattcgattcCTTCTGTGAATTCGTATCAGTGAGAGTCAACT
GCTAGGCATTCATCTTTATTAagctcttcttcattttttataaaatctaT
TTCAAAGTCTATCCCATCTCCATGAAATATAATATATAGTAAAAAAGCat
acaattaaaaataaattaaattgagAAATTATATGTGAAATATTAATcta
aaaactctaaaaaacTTTATGGATGGATGGGAACTTACCCCATTTGTAAA
TCAAATCAAACACCTCTGTTTACATGACTGGGTAAGaattgttttggaaa
tgaagaAATGAGAGACTAAAGTCTTTTTCATGCTCGGGTAAGTTAttgca
tgtcttaaaattaccataatttttagatcgcattagccggcagaaaacga
ccaaacaaatgactgaacatgaagggtactatgatgtagtttctagcCTG
ATGTGTAACCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040222XLOC_040222Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064148-exon-scaffold_409-1491911889:106325..106836TCONS_00064148-exon-scaffold_409-1491911889:106325..106836Clytia hemisphaericaexon
TCONS_00064148-exon-scaffold_409-1510915933:106325..106836TCONS_00064148-exon-scaffold_409-1510915933:106325..106836Clytia hemisphaericaexon
TCONS_00064148-exon-scaffold_409-1575043694:106325..106836TCONS_00064148-exon-scaffold_409-1575043694:106325..106836Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_409supercontigscaffold_409:106325..106836 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.351265	0.114179	0.132573	0.399755	1.93884	2.25298	6.18337	8.42657	1.9272	1.29609	0.855614	0.710573	0.868784	0.0839752	0.349363	0.868688	0.451652	0.282537	0	0.263154	0.801458	0.872185	0.940472	0.987718	0.758583	0.907205	1.54473	0.342741	1.36761	0.584068
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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