TCONS_00064500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064500
Unique NameTCONS_00064500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1049

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064500 ID=TCONS_00064500|Name=TCONS_00064500|organism=Clytia hemisphaerica|type=transcript|length=1049bp
tcattttctttttctgtagCTTATGTTGGTTTTCAATGTTATTATTGTAA
AATCGATCAGAAATTCCAAGCATTTTGCGCGATTCCAGATTCAAACATGA
TTGGAAGACTGGGTATTGGTGCTTACGAAACCAATTTCCAAACCATGGGA
TGTAATCTTTCCATGTGGATTCAAGGCTCCGAAGTTTTGCTTCAAGATTT
TCAGCGTCGTCTGCGTCAGCAAGACCATctttatgaaaataataatCTTG
TGCTCCATATAAATCGGCCATTACGTTATTTTGAATGCGCTGATTGGCAC
CCATTTTAGTAAGTTTAAATTCAGTTCTTTCTTGAAGGTGCTGTGTGCAC
CAAAGATTTTCAGCAGTTGTGAAAACACTTTTCATGCCGTTGACTGTTGC
CTTGCCAAGGTCATGTCCAATCTTTTTGATTAGGGATAATTCAGGGTTTT
CTTTGATAATCTCGAGTCCAAAGCAGAGGAATTGCGGTTCATCTTTTCTA
AAGTGCAGCATCATTGGTCCTGGAAATGACGCGTGATTACCCTTCAAATC
AACCAATGCCAAATTGTGATAAGAGGTGTCTGTTAACCAAAGTCCTGGCA
CGATTTTAAAGGTTGTGTCTATGCCGAATATGCTGTTACCTTCAACACAA
AAACGCTCTATGTCAGACATCATGTAGTCCAGGTAGAGAAAAGCCGTGTA
GCGGTCGTCTGAGATATTGACAGACtttacaaagtttttctttcGTCTAA
CTGCTCTTTGGAGGATATCAAAGCTCTGACATCATGCCATCGTCTTTGTT
CATTGAATATCTTAAATTTATGATGCTTTTCAAGCTTAATTTAGAGTTCG
GTTCCTCGTTTTCCTTATTGTGATGGAAATATGCTTGTTCACACGATTTT
CCTGATTTGAGGTTTTCTTCTACTTCGCGCAATGCCTGTGGATCTTTCCT
TGCGTAGTTTCCTAAAGTTAGGAAATAATGAAATTAAGTAACAAAGATAG
TTTGCTTATTACTCTGGTTGGCAGTTAGGGtttgaaatatgtcgttctt
Run BLAST on NCBI

transcript from alignment at scaffold_418:43338..44451-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064500 ID=TCONS_00064500|Name=TCONS_00064500|organism=Clytia hemisphaerica|type=transcript|length=1114bp|location=Sequence derived from alignment at scaffold_418:43338..44451- (Clytia hemisphaerica)
TCATTTTCTTTTTCTGTAGCTTATGTTGGTTTTCAATGTTATTATTGTAA
AATCGATCAGAAATTCCAAGCATTTTGCGCGATTCCAGATTCAAACATGA
TTGGAAGACTGGGTATTGGTGCTTACGAAACCAATTTCCAAACCATGGGA
TGTAATCTTTCCATGTGGATTCAAGGCTCCGNGGTGCTTACGAAACTAAT
TTCCAAACCATGGGATGTAATCTTTCCATGTGGATTCAAGGCTCCGAAGT
TTTGCTTCAAGATTTTCAGCGTCGTCTGCGTCAGCAAGACCATCTTTATG
AAAATAATAATCTTGTGCTCCATATAAATCGGCCATTACGTTATTTTGAA
TGCGCTGATTGGCACCCATTTTAGTAAGTTTAAATTCAGTTCTTTCTTGA
AGGTGCTGTGTGCACCAAAGATTTTCAGCAGTTGTGAAAACACTTTTCAT
GCCGTTGACTGTTGCCTTGCCAAGGTCATGTCCAATCTTTTTGATTAGGG
ATAATTCAGGGTTTTCTTTGATAATCTCGAGTCCAAAGCAGAGGAATTGC
GGTTCATCTTTTCTAAAGTGCAGCATCATTGGTCCTGGAAATGACGCGTG
ATTACCCTTCAAATCAACCAATGCCAAATTGTGATAAGAGGTGTCTGTTA
ACCAAAGTCCTGGCACGATTTTAAAGGTTGTGTCTATGCCGAATATGCTG
TTACCTTCAACACAAAAACGCTCTATGTCAGACATCATGTAGTCCAGGTA
GAGAAAAGCCGTGTAGCGGTCGTCTGAGATATTGACAGACTTTACAAAGT
TTTTCTTTCGTCTAACTGCTCTTTGGAGGATATCAAAGCTCTGACATCAT
GCCATCGTCTTTGTTCATTGAATATCTTAAATTTATGATGCTTTTCAAGC
TTAATTTAGAGTTCGGTTCCTCGTTTTCCTTATTGTGATGGAAATATGCT
TGTTCACACGATTTTCCTGATTTGAGGTTTTCTTCTACTTCGCGCAATGC
CTGTGGATCTTTCCTTGCGTAGTTTCCTAAAGTTAGGAAATAATGAAATT
AAGTAACAAAGATAGTTTGCTTATTACTCTGGTTGGCAGTTAGGGTTTGA
AATATGTCGTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040453XLOC_040453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064500-exon-scaffold_418-1575043694:44277..44451TCONS_00064500-exon-scaffold_418-1575043694:44277..44451Clytia hemisphaericaexon
TCONS_00064500-exon-scaffold_418-1575043694:43338..44211TCONS_00064500-exon-scaffold_418-1575043694:43338..44211Clytia hemisphaericaexon
TCONS_00064500-exon-scaffold_418-1510915933:44277..44451TCONS_00064500-exon-scaffold_418-1510915933:44277..44451Clytia hemisphaericaexon
TCONS_00064500-exon-scaffold_418-1510915933:43338..44211TCONS_00064500-exon-scaffold_418-1510915933:43338..44211Clytia hemisphaericaexon
TCONS_00064500-exon-scaffold_418-1491911889:44277..44451TCONS_00064500-exon-scaffold_418-1491911889:44277..44451Clytia hemisphaericaexon
TCONS_00064500-exon-scaffold_418-1491911889:43338..44211TCONS_00064500-exon-scaffold_418-1491911889:43338..44211Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:43338..44451 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.168942	0.205931	0.143463	0.0935709	0	0.045008	0.162901	0.305012	0.142364	0.220426	0.299531	0.365671	0.168537	0.320883	0.287792	0.308845	0	0.227483	0.0897943	0.140945	0.0816712	0	0	0	0.181385	0.121411	0.115826	0.123613	0.093756	0.0477613
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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