TCONS_00064650 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064650
Unique NameTCONS_00064650
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064650 ID=TCONS_00064650|Name=TCONS_00064650|organism=Clytia hemisphaerica|type=transcript|length=2521bp
aaaaattttaatatttgatACATTGAAACACTCAACTAATTTAACTAATC
GATCCAAATATATTATGCTGTTCTGACTGTACTGACAGTATTAATTTGAA
TGTAATTTGGATTTCTTATACTTTTTGAGaagtaatttttgtaaaacttc
GCAGAGATGCGAACGCTATTGATcttttttaatttagttttggCCGTTTT
TTGTTATACTGAGCATTATGgcCATTCATATTCGAACTGTATCAAACCAC
GGTATTGCCGATACTGTTCTTGGTACGACAGATTTTCGAGTTATCGAAGT
ATTGATGGCACATGTAATAATTTGAGGTATTTCACCTGGGGTGCCACCGA
TACACCGCTTCGACGCGCTTGCAGAACACGGCAATATTCAGGAGCGGAGT
ACGCTGATAAATACAAATACGATGTACCTCGTGGCTACCCTGGTTTTGCA
CCAAAACTTCCACCGGCCAATCACGTTTCAGAAATGTTGTTTGACGTTAA
GAAAGAGAACACAGGAAATAAACATTccatttcaacaattttcaTGACTT
TCGGACAGTTTTTGGACCACGACATCACGGACACACCCAGTGAAGGCTGT
CACGCCCAAACGTGTGATCAAGTTGCATCCTTCAAATATCCTTGTTTCTC
TATCTTGTGGGACGAGAACAACTACTCCAAGTGCACTCCATTTGGAAGAT
CGCGCGCCATCTGTAGACGGAGAAAGGGAACACGACAACAGGTCAATATT
TTGACCTCCTTCGTAGATGGCTCACAAATTTATGGCGCAAAGAAAGAACT
TTTCCACGATTTACGTAAAAATGATGGATCAGGTCTCATGAAACTAAAGG
ACAACTTGATGGAATTAGATCCAAAAATCAAACATTGCCACACACATGGT
GGATGTTCATTGGTGGGTGACCACAGAGGTGATGAAAACATCGCCCTTCA
TTCAATGCACACCTTATGGGTTCGCGAACATAATCGTATTGCGAAAGAAC
TCAAAGAGCTGAACCCTCACTGGGACGGAGAACGTGTGTTCCAGGAAGCA
CGAAAAATCAATACAGCTGTTCTCCAACATATTGTTTTTAAAGAATGGTT
GCCAATGATCGTGCGACCTTTCCGATACAGAGGATACAGACCACGAGTCA
ATCCCAACATCATTAACTCATTTGCTACCGCAGCCTTCCGTTTCGGACAC
AGTTTGATTCCAAACTCCTTTGAACTGTTAGACAAAAACTTTGACCCCAT
CAACAAGCCAATCACACTTCAGCACGCCTTTTTCAACCGAAAACCAATCA
ATCAGTACGGTATCGAACCGACCATGTTTGGGTTGCTAGGTAACAAGTCT
GAAGAAGTCGATACTGATTTTTCTTTCTCCATCGCACGTCGTTTGTTTGT
CGCTCCCGGCAAAGAAGACCATGTGGACTTGATGGCGCGAAACATCCAAC
GAGGACGAGATCACGGCCTGCCAACGTACGGTAAATTCCGTCGCTGGTGT
CGATTGAGGCCGATCCGTACCTGGGACCAACTCAAAAAACACATGCCTGC
CAAAGCTGTTCACGCATTCAAAGAGTTGTACCCAACGCCCAGTGATATTG
AACTTTTTCCTGCTGGGATGGCAGAGAATCACCGTGGCCGAAGAATTGTT
GGTCCCACTTTCGAATGTATTATTCGACGTCAGTTTAATCGTCTACAAAA
AGGTGATCGCTTCTATTATCGAGCCCGAGGTGTCTTCTCCAGAGCGCAAC
GTACGGCTATCTACAGAACTCGCTTATCCACTGTCCTCTGCAACAACCTC
GAACGTGTAGTATCCGTACAGAGACATGCTTTCTATGTAGCTGGTTCACG
AAATAAGCGAATCTCTTGCAACCGTATCCCTAAACTTGAATTATGGGCGT
GGAAGGAAAAACCTAAACACAAAGGCAAGAGAGATGAAATCTCATCTGAC
ACTGTCTCGAATAAGAAGGATGTTGCTTCTTCCGTGGAGATGGATATCGA
AGAGGAGTTACGTCAGCTTCACGCCAAGAGGGAGGCCACCCCAACCACCC
CTACAACCACGACAGTAGTAGGTAGCGAGAGGCAGAAGAGTGGTTTCATT
ACGGACGAGCCGTACAACATCGTAGATGAGGAAGAGGAAGCAATGATTGA
TAACATGGTCGGGTTGACTGACATCGGTAGTGAGGTGGCTGACCCTGAAG
TCGACCTAGACTATGTAGACGGGGCGGAACACCCTACAACCACCCCTACA
ACTGGAGATGGAAACTCAATTGATGAATTTGAGGTGGAAGGAGAGATCCC
AGAGGACGATTTGGCAGGATTAGACGAAGAGGGGTTTGAAACTGAGACTC
ATGCTAAAAAGGACGAGCTCTGGTGAACAGCTATCGCATCAATTTGAAAA
ACTAGTTCTTGGCAATTTCTGTAAACATAACCTTCTTTTTGTCAAATATA
CTCAATTTTTATTCTACTTGTAATTTAATTTATTCcttatttgtaatttt
tcatatttcctCTGTAATCCG
Run BLAST on NCBI

transcript from alignment at scaffold_420:307338..311050+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064650 ID=TCONS_00064650|Name=TCONS_00064650|organism=Clytia hemisphaerica|type=transcript|length=3713bp|location=Sequence derived from alignment at scaffold_420:307338..311050+ (Clytia hemisphaerica)
aaaaattttaatatttgatACATTGAAACACTCAACTAATTTAACTAATC
GATCCAAATATATTATGCTGTTCTGACTGTACTGACAGTATTAATTTGAA
TGTAATTTGGATTTCTTATACTTTTTGAGaagtaatttttgtaaaacttc
GCAGAGATGCGAACGCTATTGATcttttttaatttagttttggCCGTTTT
TTGTTATACTGAGCATTATGGTAAGTCACTTTATCAATTGACTGCCTTTT
CAgcaatttttgttgttgttgttctaAACTGTTGATTGTCTGTTAATTTT
GTAATCAGCAGACCGCTATCAGTGAAGTGAAAAGGTGCTCGTTTATTTAC
TTTGCTCTACAATTTTACTTACACCACTACAGTAGTGCTTCACCCTAGAT
GAGTAGGTCCAGAAAAcccaaaactcaaaaaagagaTTGACTCTTTAATT
AGATTCAtcagttttgttttcaatttcatcTTGATTGGGGCTCGTCAAAA
ACTCGACAGAttacttttttcacttttcaggcCATTCATATTCGAACTGT
ATCAAACCACGGTATTGCCGATACTGTTCTTGGTACGACAGATTTTCGAG
TTATCGAAGTATTGATGGCACATGTAATAATTTGAGGTATTTCACCTGGG
GTGCCACCGATACACCGCTTCGACGCGCTTGCAGTAAGTCAACTTTCACT
TCAAAATAGATATTCTCTTGATGAGTTCACCAGCATTAGGTTTATTTTGT
TTCGTACCAATAATTTATTTATCTAAGTAGACTGGTAGTTTCTATTCTTA
AAATTCAAATGAATCAGTCTTTTTGCTTTGTTGAAAATATATGCTGCTCT
TCAAGTCAATCTTTTCAAAACGATATTTCTCCTTTCTTAGGAACACGGCA
ATATTCAGGAGCGGAGTACGCTGATAAATACAAATACGATGTACCTCGTG
GCTACCCTGGTTTTGCACCAAAACTTCCACCGGCCAATCACGTTTCAGAA
ATGTTGTTTGACGTTAAGAAAGAGAACACAGGAAATAAACATTccatttc
aacaattttcaTGACTTTCGGACAGTTTTTGGACCACGACATCACGGACA
CACCCAGTGAAGGCTGTCACGCCCAAACGTAAGTCTCGTTTGATTCAGCA
ATCACTTCTTGTCCTTCCCAACCAATCTGACCTGTCTATATATGTAAAGT
ATCCACAAAATGGCCTTCTTTTGGTCTTCATTTTCCTCCGAAGTGACCTG
TTCAGTGAAATTCGTAAATTTTCTTCTCCATTACTTGAAttctttatttc
aatttttttatcaaataattttcACAGTGATACACTTTTTGTCCACATGG
CTATTCAATTCATCATCATATTCTTATCTTAGGTGTGATCAAGTTGCATC
CTTCAAATATCCTTGTTTCTCTATCTTGTGGGACGAGAACAACTACTCCA
AGTGCACTCCATTTGGAAGATCGCGCGCCATCTGTAGACGGAGAAAGGGA
ACACGACAACAGGTCAATATTTTGACCTCCTTCGTAGATGGCTCACAAAT
TTATGGCGCAAAGAAAGAACTTTTCCACGATTTACGTAAAAATGATGGTA
AGTAAGAATTATTCTGAAGCTTTTTTACCTCTAAGTTACCCTTCGAAAAA
GTAAAGTGTAAAATGACGAAATATTGCGCCAGCGAATACTTTTAAACGTC
ACCTTTTATATTACacaatcacgcaaaaaaaatacaaatcacgttatcac
gagttaaattttctttctatcacGATAAAGTTAATCACGTTGGTTCCTCT
GATCGCACGCAACCacgcactttaaaatcttaaatcctGCCATCATGAAA
ACCACTGGAAGGCCTCTAttagtttaatatttttgtatctTTGAGGAACT
CCAAAAACCATTATCTCAACAGTTAAACAATGTAGACTTGAATCTACATT
TATACTACTTACGCCCTTCTAAAGTTGGAAACTGGTCATCACGTACTCCT
TCTCTTCTTTCATTCTAGGATCAGGTCTCATGAAACTAAAGGACAACTTG
ATGGAATTAGATCCAAAAATCAAACATTGCCACACACATGGTGGATGTTC
ATTGGTGGGTGACCACAGAGGTGATGAAAACATCGCCCTTCATTCAATGC
ACACCTTATGGGTTCGCGAACATAATCGTATTGCGAAAGAACTCAAAGAG
CTGAACCCTCACTGGGACGGAGAACGTGTGTTCCAGGAAGCACGAAAAAT
CAATACAGCTGTTCTCCAACATATTGTTTTTAAAGAATGGTTGCCAATGA
TCGTGCGACCTTTCCGATACAGAGGATACAGACCACGAGTCAATCCCAAC
ATCATTAACTCATTTGCTACCGCAGCCTTCCGTTTCGGACACAGTTTGAT
TCCAAACTCCTTTGAACTGTTAGACAAAAACTTTGACCCCATCAACAAGC
CAATCACACTTCAGCACGCCTTTTTCAACCGAAAACCAATCAATCAGTAC
GGTATCGAACCGACCATGTTTGGGTTGCTAGGTAACAAGTCTGAAGAAGT
CGATACTGATTTTTCTTTCTCCATCGCACGTCGTTTGTTTGTCGCTCCCG
GCAAAGAAGACCATGTGGACTTGATGGCGCGAAACATCCAACGAGGACGA
GATCACGGCCTGCCAACGTACGGTAAATTCCGTCGCTGGTGTCGATTGAG
GCCGATCCGTACCTGGGACCAACTCAAAAAACACATGCCTGCCAAAGCTG
TTCACGCATTCAAAGAGTTGTACCCAACGCCCAGTGATATTGAACTTTTT
CCTGCTGGGATGGCAGAGAATCACCGTGGCCGAAGAATTGTTGGTCCCAC
TTTCGAATGTATTATTCGACGTCAGTTTAATCGTCTACAAAAAGGTGATC
GCTTCTATTATCGAGCCCGAGGTGTCTTCTCCAGAGCGCAACGTACGGCT
ATCTACAGAACTCGCTTATCCACTGTCCTCTGCAACAACCTCGAACGTGT
AGTATCCGTACAGAGACATGCTTTCTATGTAGCTGGTTCACGAAATAAGC
GAATCTCTTGCAACCGTATCCCTAAACTTGAATTATGGGCGTGGAAGGAA
AAACCTAAACACAAAGGCAAGAGAGATGAAATCTCATCTGACACTGTCTC
GAATAAGAAGGATGTTGCTTCTTCCGTGGAGATGGATATCGAAGAGGAGT
TACGTCAGCTTCACGCCAAGAGGGAGGCCACCCCAACCACCCCTACAACC
ACGACAGTAGTAGGTAGCGAGAGGCAGAAGAGTGGTTTCATTACGGACGA
GCCGTACAACATCGTAGATGAGGAAGAGGAAGCAATGATTGATAACATGG
TCGGGTTGACTGACATCGGTAGTGAGGTGGCTGACCCTGAAGTCGACCTA
GACTATGTAGACGGGGCGGAACACCCTACAACCACCCCTACAACTGGAGA
TGGAAACTCAATTGATGAATTTGAGGTGGAAGGAGAGATCCCAGAGGACG
ATTTGGCAGGATTAGACGAAGAGGGGTTTGAAACTGAGACTCATGCTAAA
AAGGACGAGCTCTGGTGAACAGCTATCGCATCAATTTGAAAAACTAGTTC
TTGGCAATTTCTGTAAACATAACCTTCTTTTTGTCAAATATACTCAATTT
TTATTCTACTTGTAATTTAATTTATTCcttatttgtaatttttcatattt
cctCTGTAATCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040554XLOC_040554Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064650-exon-scaffold_420-1491911889:307338..307557TCONS_00064650-exon-scaffold_420-1491911889:307338..307557Clytia hemisphaericaexon
TCONS_00064650-exon-scaffold_420-1510915933:307338..307557TCONS_00064650-exon-scaffold_420-1510915933:307338..307557Clytia hemisphaericaexon
TCONS_00064650-exon-scaffold_420-1575043694:307338..307557TCONS_00064650-exon-scaffold_420-1575043694:307338..307557Clytia hemisphaericaexon
TCONS_00064650-exon-scaffold_420-1491911889:307868..308020TCONS_00064650-exon-scaffold_420-1491911889:307868..308020Clytia hemisphaericaexon
TCONS_00064650-exon-scaffold_420-1510915933:307868..308020TCONS_00064650-exon-scaffold_420-1510915933:307868..308020Clytia hemisphaericaexon
TCONS_00064650-exon-scaffold_420-1575043694:307868..308020TCONS_00064650-exon-scaffold_420-1575043694:307868..308020Clytia hemisphaericaexon
TCONS_00064650-exon-scaffold_420-1491911889:308228..308465TCONS_00064650-exon-scaffold_420-1491911889:308228..308465Clytia hemisphaericaexon
TCONS_00064650-exon-scaffold_420-1510915933:308228..308465TCONS_00064650-exon-scaffold_420-1510915933:308228..308465Clytia hemisphaericaexon
TCONS_00064650-exon-scaffold_420-1575043694:308228..308465TCONS_00064650-exon-scaffold_420-1575043694:308228..308465Clytia hemisphaericaexon
TCONS_00064650-exon-scaffold_420-1491911889:308720..308934TCONS_00064650-exon-scaffold_420-1491911889:308720..308934Clytia hemisphaericaexon
TCONS_00064650-exon-scaffold_420-1510915933:308720..308934TCONS_00064650-exon-scaffold_420-1510915933:308720..308934Clytia hemisphaericaexon
TCONS_00064650-exon-scaffold_420-1575043694:308720..308934TCONS_00064650-exon-scaffold_420-1575043694:308720..308934Clytia hemisphaericaexon
TCONS_00064650-exon-scaffold_420-1491911889:309356..311050TCONS_00064650-exon-scaffold_420-1491911889:309356..311050Clytia hemisphaericaexon
TCONS_00064650-exon-scaffold_420-1510915933:309356..311050TCONS_00064650-exon-scaffold_420-1510915933:309356..311050Clytia hemisphaericaexon
TCONS_00064650-exon-scaffold_420-1575043694:309356..311050TCONS_00064650-exon-scaffold_420-1575043694:309356..311050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_420supercontigscaffold_420:307338..311050 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.276115	0.373795	0	0.648828	1.51341	3.27095	3.69532	0.72938	2.4446	3.46111	0.765733	118.398	15.8517	0	0.231365	0	0	0.136789	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00064650 vs. Swiss-Prot (Human)
Match: PXDN (Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2)

HSP 1 Score: 337.421 bits (864), Expect = 1.675e-98
Identity = 217/610 (35.57%), Postives = 309/610 (50.66%), Query Frame = 1 
Query:  226 SYSNCIKPRYCRYCSWYDRFSSYRSIDGTCNNLRYFTWGATDTPLRRACRTRQYSGAEYADKYKYDVPRG------YPGFAPKLPPANHVSEMLFDVKKENTGNKHSISTIFMTFGQFLDHDITDTPSEGCHA-----QTCDQVASFKYPCFSILWDENNY-----SKCTPFGRSRAICRRRKGT--------RQQVNILTSFVDGSQIYGAKKELFHDLRKNDGSGLMKLKDNLMELDPKIKHCHTHGG--------------CSLVGDHRGDENIALHSMHTLWVREHNRIAKELKELNPHWDGERVFQEARKINTAVLQHIVFKEWLPMIVRPF------RYRGYRPRVNPNIINSFATAAFRFGHSLIPNSFELLDKNFDPINKP-ITLQHAFFNR-KPINQYGIEPTMFGLLG--NKSEEVDTDFSFSIARRLFVAPGKEDHVDLMARNIQRGRDHGLPTYGKFRRWCRLRPIRTWDQLKKHMPAKAV-HAFKELYPTPSDIELFPAGMAENHRGRRIVGPTFECIIRRQFNRLQKGDRFYYRARGVFSRAQRTAIYRTRLSTVLCNNLERVVSVQRHAFYVAGSRNKRISCNRIPKLELWAWKE 1908
            + S C   R    CS       YR+ DGTCNNL++  WGA+ T   R  ++   +G        ++ PRG      Y G A  LP    VS  L  +  E        + + M +GQFLDHD+  T      A     Q C  V S   PCFS++   N+      ++C  F RS  +C     +        R+Q+N LTS++D S +YG+ +     +R +  S    L+  +++   K       G               C L GDHR +E + L SMHTLW REHNRIA EL +LNPHWDG+ ++ E RKI  A +QHI ++ WLP I+          Y GY P +N  I N+FATAAFRFGH+L+      LD+NF PI +  + L  AFF+  + +N+ GI+P + GL G   K        +  +  RLF +      +DL A NIQRGRDHG+P Y  +R +C L    T++ LK  +    +    K LY +  +I+LFPA + E+      +GPT  C++  QF RL+ GDR +Y   GVFS AQ T I +T L+ +LC+N + +  VQ   F VA   +   SC+ IP+++L  W++
Sbjct:  719 NLSGCTAHRRVNNCSDMCFHQKYRTHDGTCNNLQHPMWGASLTAFERLLKSVYENG--------FNTPRGINPHRLYNGHA--LPMPRLVSTTL--IGTETVTPDEQFTHMLMQWGQFLDHDLDSTVVALSQARFSDGQHCSNVCSNDPPCFSVMIPPNDSRARSGARCMFFVRSSPVCGSGMTSLLMNSVYPREQINQLTSYIDASNVYGSTEHEARSIR-DLASHRGLLRQGIVQRSGKPLLPFATGPPTECMRDENESPIPCFLAGDHRANEQLGLTSMHTLWFREHNRIATELLKLNPHWDGDTIYYETRKIVGAEIQHITYQHWLPKILGEVGMRTLGEYHGYDPGINAGIFNAFATAAFRFGHTLVNPLLYRLDENFQPIAQDHLPLHKAFFSPFRIVNEGGIDPLLRGLFGVAGKMRVPSQLLNTELTERLF-SMAHTVALDLAAINIQRGRDHGIPPYHDYRVYCNLSAAHTFEDLKNEIKNPEIREKLKRLYGSTLNIDLFPALVVEDLVPGSRLGPTLMCLLSTQFKRLRDGDRLWYENPGVFSPAQLTQIKQTSLARILCDNADNITRVQSDVFRVAEFPHGYGSCDEIPRVDLRVWQD 1314
The following BLAST results are available for this feature:
BLAST of TCONS_00064650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PXDN1.675e-9835.57Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 S... [more]
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