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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064853 ID=TCONS_00064853|Name=TCONS_00064853|organism=Clytia hemisphaerica|type=transcript|length=586bp
AAAGAGTGTGAGCTGATAGCTGATGCTGATGtgTTGACTTTTTTACTTTG
GTGAGAAAATGAGTTTGAGCTAAAAGGTCTGTCAAGGAAGGATGATGGCT
GTTAGTGTGCTAGAAAGATTTAACAACCTTCCACCTCACAGATGTTACGC
GAGGTAATCGTCACAAGCCAAAATCCATGTTCaacagattttgaaaacga
aagtgtaaaGAATAAACATTGCCGTAAACGCGTTTAAAACGCGGGTAAAA
AGCCCTGGGCCGAGTCCCGCGTTTGCTCATTCAGCCAATCAGATCATACA
ATCTAGCCGGTTCCCAACTCCCGCTATAAAATCACATTGTATATATCGAA
ATAAAACCGGTTTAAATATTTACTAAAAGCTTATTTCACTGAAAGAAAAT
AGCTTTAATGaaacaaattttggttaaatatCTTTCTTATTATATATAAA
ACCTGAATCTAAATGGTTTTGAGAAGTAAAAGAGTGTACGAATAGACAAA
GATCGTTTATGACCCCCGTCTCAGATGAGTTCTTCAGGCTTTATCTAAAG
ATAGAGAACTAAAACAAGCTTGACCcactaaactat Run BLAST on NCBI transcript from alignment at scaffold_425:305225..311652+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064853 ID=TCONS_00064853|Name=TCONS_00064853|organism=Clytia hemisphaerica|type=transcript|length=6428bp|location=Sequence derived from alignment at scaffold_425:305225..311652+ (Clytia hemisphaerica)
AAAGAGTGTGAGCTGATAGCTGATGCTGATGGTGAGTATAAATTTTCCAA
ACTTTTTCTGCAATGTTTTGTGAGAAAGTAAAGAATAGGTTTTCATTCAA
ATATTACCAAATCACCATAGTTTGATGCCAAAAAACACAAGATATATACT
AGGTCACAGTTTGCTTCACTTCAGAGCAAACTGCTGTTTTACAGagcaat
acaccgtttaggagtctcgccatttcacggtactccattgcagaggcccg
gtaaaaatggtaggtaaaaatgcgcactttagtactgtgaaaggttagag
gaatgtaaacattgtgaatttttgtctctcctttaaagagaatgataatg
attagatatttgaacatgatatcaatgataattttataagtctctcctga
aaatttcacaaaaattcatcaagaggaaaagaagttatgattaaaaggag
ttctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttacctaccgtttttt
tacggaggagagtgaattttccgtgatcgctaaaatcaaaacaatggaaa
attggattgacgcgtgcgcagtcgacactcctaaatgGTGTATTAACACT
TTCTTCATCGGGAGTCAACAAAACAACATCTATCACAaatctagcctggg
aatccaagctcataattttagaaaaaacaaaaaatacctcacctcacaaa
gttctaaaattatagagcttggtgcaggtagattagtctgaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTCTGTGtatgaac
ccttgttgacagactttctgaactttggaaacccaggcaaacgcacataa
tcaacttaccataaaaactctttcacaagctctaaatgctaaagactttc
aaaactactaaaaactacatcaaaacatcagccacatgtatttagacttc
cagccaacagccattttgttttgaaatgagtcTATGTTTTCATTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtccctgcaggc
gagttacctgcaccaagcgttaaaccagcagcaaaaatatcataaactag
actgtgaaaaaagtttaacgcttggattcccaggctatcaCAAATCATGT
ATGATacttcataaaaaatgaaaaaaagcataTGTAAAATGCAATgtcaa
aaagaattgaagaggACCGAGAGAAGTCCTAATTCAAAATTACTCCAAGA
AGTGCATCTAAAAACAAagacagttaggaacatttggcgagttcctgtac
gcgaccgcgatctaaaaaatcataacaacactcattaaaaaatgacgttt
gtgtcttttcgcacttttttttagcctagacgatgtagcaaacatagtaa
atataagcacactgtgcttttaattggctgaaatttttttttgcgtcgga
aaagctttttcaaactttcagcaatgattgaccaaactgttacaatgaaa
attatccagcgcattttttatcttcttatcttcttaatcttcaatgaagc
actcaacgTTTACTGcatttaagcacataagatattcttataattattga
tattcactaaaACACAGTTCGTTGTGtgctgcggtggagtgtatgacgta
acttGCGCGGTAACTAGCTCGCcttttgttggaagatcataaTGGGCGTT
ATAgcgttaccaccctcaaagctagcgggcgcccctgtctttccgcaact
ctttccaccatcttagatggccataacaatagatccaaaagggcgccata
atcttggaagataatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgatggaaaatagtaag
aaacttaagtttacaagtggcatttagtttttgctggcttatagaatggc
aggatcctggatggtttccctaactgaaagACTACCTCTAAAATCAAAAC
GCGCGCAtctccagacggtgtcaatcgaacaacttcgaacaaaaatcgca
atcgaaccaatcgaacgtaatcgaacgcgatcaaataattgcgattcgat
tgtcgaacgtaatcgaatctcaatcgaacggcctattcctgggtaatatt
caattgtgttcgattgcgttcgagtaatgttcgattgatagttgactatg
ttcgattggttcgattgattgtcaattacattggattaatgttcgattac
gattatgttcgatgagtttgattgcgattaaatcaaattggatcactctg
ttagagcttttttttagcgtgggcggacGAGTGCTTAAGTACCGgaccaa
agcaaataaaatctaatacacaattgaatcaatcaaacgtaatcgaatac
aatcgaacgtaatcgaatacaatcgaacgtaatcaaatacaatcaAACGT
AATGTAAAataaatcctgggtaatattcgattgcgattcgattgcgttcg
acaatcaaattgcaattattcgattgcgttcaattgcgttcgattgattc
ggcgttcgattcgttcgattgacaccgtctgggcaTCTAGCTAACACGCT
GAACTTTCTAAGTCACCGTACCATCCACCCATCCCTCTCTGGGCCACCGT
ACACATCTCTTAGATATTTGCGTGGTTATCTCCCTAGTATTCAGccacca
aaattgaaaattaagatGGTAACTCAAGCTgcacactttcactttcgatt
tcaacttTTCAACCTTCCAGACTCCGTAAACAAAAACACGACGGTAAAAA
ACCGCCTTCAGGCGGTCGATAatatataccgtgaagtcgggtatgGGGCC
ACTTCTGCACTCACATCACATATCGATCTTTCTTTATTGATGTTCCACAC
ACTGCCAGAGAGAAGTTGCTTCCTCCTTCTGCTTGGTACATTTTGCTTGT
TTTCCTCCGAGTAGTGGTATTCTTTTACACAGATTGGTTCCCAGACCCGC
ATAAGTTATGACACAGTAAAATAAAGCCCCAAACTTTTTTAACATAtatc
cagacaatctcaatcgaacggaatcgacaatcgaaccagtcgaaccaaat
tgaacgcaatcgaccgattgaaattcgattgtcgaacgcaatcaaatctc
aatcgaatattaccgcagttttcagattcgattgatattcgattgcgttc
gatcgtcgattcattgacccccggattgttcatcgcataatttctacgga
aaatcgaaagtaatttcattcggcttgtgatgtttgagagcttggatgtt
gggaagctgcaagaataaagccagacgatctcaaacgaacggaatcgacg
atcgaaccagtcaaacaacaatcgaaccaatcgaatattacccagaattt
tgacgtttgattgagattcgattgcgttcgacaatcaaatttcaatcggt
tgattgcgttcaatttggttcgattgcttcgatcgtcgattccgtttgat
tgagattgtctggataTATGAGCATCTCCAGCATTTTACTATAACTGGTT
TATTCTCTCGATGCCGTGatgaaaaagaggaaaatttgatGCAAAGGTGT
TTTGTCCGCTAGTTTGAAAcgcaggttcaggtttcaggttacaggttcag
gttacaggttaaaaCAGAATAATTGCCAGACCAGATATCATTTCGACTTG
TGAAGTTTGCAGaccagataaaaaaaattcccggTGTTTGAAAGTTCCGT
TTTTTGTCCCAATTATGCTGTatttagcctccttttcaaaaattttccac
ccaggacatttttattcaacccccccccccccccccgctccACCCTCTCA
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTCCAGCttttaggtacc
cgagagtaactcttcatacaaaaattacaaaacgcatgtttggactttgt
accctatgctgcacgcaagcacttaaaCCAAAGTCCcacaaaggcgggac
aaaaatcagttttttaaagtttgcaaAAATCGCCACataaaagatctttc
aaatttagtatgtgaatagagcagtaaaaaatacaactgttctatttttc
ctttttttgcaaaagatcttggaatgaaaataaagggatatataccgata
attgaatactatccattgatgatctgcggcactatcgtaaagctagaatt
catagtgcggaaaggggtctgatccccccttcttaaatgatcccaacctt
taaaaatgcctatctcccaagggttttgggctaaattttttatggtaaaa
agggacgggaaacagtaaagaaaaattaagtctgtCAAATagaataccac
tttttagtgaaaataaagaacttcctttcatgcagaccaaattttATAAC
AGTGCTTggaaataatctacaatatatgtaagccccccttcttaaacgac
ccccccctccttgctatccccccctttttaatgaaaatttctgatccctc
cccttcttcacttttttggaaggtgtcatccccccccttaagaaaggggg
gtcCGAAATATGCAAACAATCCAATATCTGAATGAAGATGATTTTATCCT
TCATGTTTCTTGAAACNtcttcacttttttggaaggtgtcatcccccccc
cttaagaaagggggggttCGAACTATGGATTGCTTcgcatactcttcgct
tgagaaaagattgacagattgaagtttttcactcGCGCGGGAGCTTGCAG
GCGTTCTGCGAGCGTTTTgcaagcgttctcggctcaatccttaGACCgcg
ttaaaaatggtagactgtgctgtgatagatcatttcgatggaagttgttg
gaatgtttacaaggctcttggcAGAAAATCGTttattttattgtcaatga
taaCAGTgcagttattaattttgttagatctgacaaattgatgtttgtaa
gtgcactttatagttttgattcccattgaagaatcgtattctggttttca
tgtcattagatgctgttttagagctttagagctagcctgcctGGATTTTT
CCGGATGTGCGTCCGGGCAGCATTTTTTATTGAAGCCTTTTTTGCGATCT
CGGTCCTCTAATTCAAGTGAAAAGTCATCTAAAATAACTTAAATCATTTT
AtttactttctttcttttttcagtgTTGACTTTTTTACTTTGGTGAGAAA
ATGAGTTTGAGCTAAAAGGTCTGTCAAGGAAGGATGATGGCTGTTAGTGT
GCTAGAAAGATTTAACAACCTTCCACCTCACAGATGTTACGCGAGGTAAT
CGTCACAAGCCAAAATCCATGTTCaacagattttgaaaacgaaagtgtaa
aGAATAAACATTGCCGTAAACGCGTTTAAAACGCGGGTAAAAAGCCCTGG
GCCGAGTCCCGCGTTTGCTCATTCAGCCAATCAGATCATACAATCTAGCC
GGTTCCCAACTCCCGCTATAAAATCACATTGTATATATCGAAATAAAACC
GGTTTAAATATTTACTAAAAGCTTATTTCACTGAAAGAAAATAGCTTTAA
TGaaacaaattttggttaaatatCTTTCTTATTATATATAAAACCTGAAT
CTAAATGGTTTTGAGAAGTAAAAGAGTGTACGAATAGACAAAGATCGTTT
ATGACCCCCGTCTCAGATGAGTTCTTCAGGCTTTATCTAAAGATAGAGAA
CTAAAACAAGCTTGACCcactaaactat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064853-exon-scaffold_425-1491911889:305225..305255 | TCONS_00064853-exon-scaffold_425-1491911889:305225..305255 | Clytia hemisphaerica | exon |
| TCONS_00064853-exon-scaffold_425-1510915933:305225..305255 | TCONS_00064853-exon-scaffold_425-1510915933:305225..305255 | Clytia hemisphaerica | exon |
| TCONS_00064853-exon-scaffold_425-1575043694:305225..305255 | TCONS_00064853-exon-scaffold_425-1575043694:305225..305255 | Clytia hemisphaerica | exon |
| TCONS_00064853-exon-scaffold_425-1491911889:311098..311652 | TCONS_00064853-exon-scaffold_425-1491911889:311098..311652 | Clytia hemisphaerica | exon |
| TCONS_00064853-exon-scaffold_425-1510915933:311098..311652 | TCONS_00064853-exon-scaffold_425-1510915933:311098..311652 | Clytia hemisphaerica | exon |
| TCONS_00064853-exon-scaffold_425-1575043694:311098..311652 | TCONS_00064853-exon-scaffold_425-1575043694:311098..311652 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:305225..311652 + |
Blast
The following BLAST results are available for this feature:
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