TCONS_00064979 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064979
Unique NameTCONS_00064979
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064979 ID=TCONS_00064979|Name=TCONS_00064979|organism=Clytia hemisphaerica|type=transcript|length=324bp
ACCCTTCAGAGATTTCAGGATGATTTCGAAGGAAGAAATTAAGAAATACT
CGTCTGTCGTCATTTCCATGAACTTGATTATGCGGAAAAAATTGTTCCGT
TCCCTCATTTTATTGGAAAAATCCTCTGCAAACCTTTGACAGCATTTTAG
TATGGTGAGAATGGTTGTCGAGATTTCTCTTTCTTTGAGGTTCTCCAATC
GTTCAGCTAAGATATCAATGATGTTGGCTTTGCTTAGCACTGTGTACGTC
TCCTGCTCGTTTTTGATTAATGTCTTTTCGATCAATTGCGTCAACATCAG
TTCTATTTCAGGTTTGTCTTCGAC
Run BLAST on NCBI

protein sequence of TCONS_00064979-protein

>TCONS_00064979-protein ID=TCONS_00064979-protein|Name=TCONS_00064979-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
VEDKPEIELMLTQLIEKTLIKNEQETYTVLSKANIIDILAERLENLKERE
ISTTILTILKCCQRFAEDFSNKMRERNNFFRIIKFMEMTTDEYFLISSFE
IILKSLKG
Run BLAST on NCBI

transcript from alignment at scaffold_427:259252..259575

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064979 ID=TCONS_00064979|Name=TCONS_00064979|organism=Clytia hemisphaerica|type=transcript|length=324bp|location=Sequence derived from alignment at scaffold_427:259252..259575 (Clytia hemisphaerica)
GTCGAAGACAAACCTGAAATAGAACTGATGTTGACGCAATTGATCGAAAA
GACATTAATCAAAAACGAGCAGGAGACGTACACAGTGCTAAGCAAAGCCA
ACATCATTGATATCTTAGCTGAACGATTGGAGAACCTCAAAGAAAGAGAA
ATCTCGACAACCATTCTCACCATACTAAAATGCTGTCAAAGGTTTGCAGA
GGATTTTTCCAATAAAATGAGGGAACGGAACAATTTTTTCCGCATAATCA
AGTTCATGGAAATGACGACAGACGAGTATTTCTTAATTTCTTCCTTCGAA
ATCATCCTGAAATCTCTGAAGGGT

Coding sequence (CDS) from alignment at scaffold_427:259252..259575

>TCONS_00064979 ID=TCONS_00064979|Name=TCONS_00064979|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_427:259252..259575 (Clytia hemisphaerica)
GTCGAAGACAAACCTGAAATAGAACTGATGTTGACGCAATTGATCGAAAA
GACATTAATCAAAAACGAGCAGGAGACGTACACAGTGCTAAGCAAAGCCA
ACATCATTGATATCTTAGCTGAACGATTGGAGAACCTCAAAGAAAGAGAA
ATCTCGACAACCATTCTCACCATACTAAAATGCTGTCAAAGGTTTGCAGA
GGATTTTTCCAATAAAATGAGGGAACGGAACAATTTTTTCCGCATAATCA
AGTTCATGGAAATGACGACAGACGAGTATTTCTTAATTTCTTCCTTCGAA
ATCATCCTGAAATCTCTGAAGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040741XLOC_040741Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064979-exon-scaffold_427-1491911889:259252..259575TCONS_00064979-exon-scaffold_427-1491911889:259252..259575Clytia hemisphaericaexon
TCONS_00064979-exon-scaffold_427-1510915933:259252..259575TCONS_00064979-exon-scaffold_427-1510915933:259252..259575Clytia hemisphaericaexon
TCONS_00064979-exon-scaffold_427-1575043694:259252..259575TCONS_00064979-exon-scaffold_427-1575043694:259252..259575Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064979-proteinTCONS_00064979-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:259252..259575 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.30848	0	1.39711	0.683426	14.9761	9.20446	46.0056	46.4115	40.0323	31.5551	11.2511	15.6139	0.615481	0	0.700661	1.31585	0	0.71207	2.95129	0	0.596512	0.872873	0	0.321562	0.331201	1.18236	2.11494	0	0.684778	0.69768
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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