TCONS_00069908 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069908
Unique NameTCONS_00069908
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069908 ID=TCONS_00069908|Name=TCONS_00069908|organism=Clytia hemisphaerica|type=transcript|length=1462bp
GACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCACTGTAAAAAGT
GTATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTATCAGGCAAA
CCACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAGCTCTAA
CCCTGAGTTACGCTAAGCCACTGTCTTGGAAAGACTATGAACGCCGAAGA
GCGTACAACAAATTCGTGTACGATATTCTAGCTGACAAAAAGAAAGCTAT
AGAGGAAGAAGGAGGATTTCAATACAGAAGAGAATATCCGAAAAGACGTG
CTGAGAGTTTGGATGGTACAGAGCAGTATCATACTACATCTCAACCCATT
ACAACAGATAGTTGGAGATTAcctaaatcaaaatcaaatggaTATACCAC
AGATCGACCGTGGTATTGGACAACAGATCGATCCTGGACTACTAGGCGCC
CCTGGACCACTGGACGACCCTGGACTACATGGCACCCCTGGACCACTGGA
CGACCCTGGACTACTTGGCACCCATGGACCACTGGACGACCCTGGACTAC
TTGGCACCCCTGGACCACTGGACGACCCTGGACTACATGGCGCCCCTGGA
CCACAGATCATCCCTGGACTACTTGGCACCCATGGACCACTGGACGACCC
TGGACTACTTGGCGCCCCTGGACCACTGGACGACCCTGGACTACTTGGCG
CCCATGGTGGACTACAAGTCGACCATCAGGAGGAAGActcttaaaagaaa
aagaacacaTTAATAAATCATGGGGATGGCTTGAAGAGTACTTTTACAAC
AAGAAGAAGAAATAAGCAATGAAGTTGATGACACCGTTATCGTATTGTCT
ACagacttttgttatttttttcatactCTATTTTTTGCATCTTAGAtttt
ttagtttgttttgtttgttattttttttgttgaaatttgtaACGCTTTTT
AATTATGTTATGAACGATGTAAAACATATTCGTCCAATATGGTACACCGT
ACTTAACCTTAATGTTGACCGTGTAACTAATCAGAAAACTATTTATGATA
TAATTTCGGCCTTGGTTGCTACAATCATCCGCCGAAATATATCAcaaatt
ttgggtattttaacgtttttcagactTTGAAGCTCGGGCGAGGATTGCGA
TTTaagtattttatttgatttttcgatttgggggCGGGGTTAAGAATTTA
GAGTTAAAACTGTAACCTCCAATCGTACTTTAGTAAAGTAACCGGAAACA
TAACTTTTATactcaaataccaaaatcaattttttgactatggtcagagc
cgtTAAGTGTAAGATATTACGGTGGGGATTGTAGTCTTGAAACCATATAA
CTCCCCAAGAAGATATGGCAACCGAGCCGATTATCTATCATACCTTTGTA
TCACTTACTAACAATAACCTCTCCATCATCTAGTGAGATGTTTCCTATTT
GTTCATTTTTCG
Run BLAST on NCBI

transcript from alignment at scaffold_511:343467..348551+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069908 ID=TCONS_00069908|Name=TCONS_00069908|organism=Clytia hemisphaerica|type=transcript|length=5085bp|location=Sequence derived from alignment at scaffold_511:343467..348551+ (Clytia hemisphaerica)
GACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCACTGTAAAAAGT
GTATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTATCAGGCAAA
CCACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGCAGCTCTAA
CCCTGAGTTACGGTAAGTAAGCATTATTTCAAATGAATGATAATTCTAGT
TTGCTCTTCAAGCTCATTTTCTCTTCAGGCATATTTAAAAGACATTTAAC
CCTGAAGGGAGGGAATTATTATTTTATCATACCCTGCATTTTTAATGTTA
CGCAGAATAAATAAAACGAAAAATCTTGGTCGTGTGGGGTGTGGCCTAAT
TTTTTCCGTAAGAATAAATTGAGTTGACACGAGATAATAATTTGTAGCGA
AATAGTgcatagatttttttttctactttttttctaGCTAAGCCACTGTC
TTGGAAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGTGTACGATA
TTCTAGCTGACAAAAAGAAAGGTTATTATCATCAATACAACGGAGAATAC
ATTGACATTGATATTTATTTTACTTCAGCCTTTGTCGAAAATTATAGGAA
ATATTCATGGCCACAATAATCAATTTGCCCATTagaaaaatttttcttct
tcatttttcatcttcgttatctTTCCAAGGAGGTACTCTTTTTTAACGTT
AATTTTTACCAAGATTGATGTTTCAAAATTTACGACGGACTGCTAAGTTC
TTTGGAAGAGAGTTTAATTACAACAAATAATAGGAAGATTGATCCCCTCA
GGACACTTACCTCCCAGAAAAATCGATATTTACACACCTTTATGATGTTT
TAGCTATAGAGGAAGAAGGAGGATTTCAATACAGAAGAGAATATCCGAAA
AGACGTAAGAATTTATAGCAACATGtgccaaaaattgcaaaaataatgtt
aaaaacaaagcgataaaaaaataaaatttgatttggTCTGATTCGGAGAC
CTCCGTACTTTTTCGTTTTATACTNTAAAAGACATTTAACCCTGAAGGGA
GGGAATTATTATTTTATCATACCCTGCATTTTTAATGTTACGCAGAATAA
ATAAAACGAAAAATCTTGGTCGTGTGGGGTGTGGCCTAATTTTTTCCGTA
AGAATAAATTGAGTTGACACGAGATAATAATTTGTAGCGAAATAGTgcat
agatttttttttctactttttttctaGCTAAGCCACTGTCTTGGAAAGAC
TATGAACGCCGAAGAGCGTACAACAAATTCGTGTACGATATTCTAGCTGA
CAAAAAGAAAGGTTATTATCATCAATACAACGGAGAATACATTGACATTG
ATATTTATTTTACTTCAGCCTTTGTCGAAAATTATAGGAAATATTCATGG
CCACAATAATCAATTTGCCCATTagaaaaatttttcttcttcatttttca
tcttcgttatctTTCCAAGGAGGTACTCTTTTTTAACGTTAATTTTTACC
AAGATTGATATGTTTACGACGGAATGCCAAGTTTTTTTGGAAGAGAGTTT
AATTACAACAAATAGTAGGAAGATTGATCCCCTCAGGACACTTACCTCCC
AGAAAAATCGATATTTACACACCTTTATGATGTTTTAGCTATAGAGGAAG
AAGAAGGATTTCAATACAGANccttttgttatttttttcatactCTATTT
TTTGCATCTtagattttttagttttttaatttcgcctagcgaaagtatta
cgatagcctttcgcggcggcggcggcggtgtaataaaaaaattagaaaac
gaaagtactcgatacggtggacNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGCAATAAAA
ATTGGAATCTCTCTGTAAGTTTTAATCCGCATCCCTGTTACACCCTGTCA
GGAAGGTGACACAAGCCTTGAAATTACAATTTTAATTAGAGCAGCACTGT
AAAAAGTGTATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTATC
AGGCAAACCACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGCA
GCTCTAACCCTGAGTTACGGTAAGTAAGCATTATTTCAAATGAATGATAA
TTCTAGTTTGCTCTTCAAGCTCATTTTCTCTTCAGGCATATTTAAAAGAC
ATTTAACCCTGAAGGGAGGGAATTATTATTTTATCATACCCTGCATTTTT
AATGTTACGCAGAATAAATAAAACGAAAAATCTTGGTCGTGTGGGGTGTG
GCCTAATTTTTTCCGTAAGAATAAATTGAGTTGACACGAGATAATAATTT
GTAGCGAAATAGTgcatagatttttttttctactttttttctaGCTAAGC
CACTGTCTTGGAAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGTG
TACGATATTCTAGCTGACAAAAAGAAAGGTTATTATCATCAATACAACGG
AGAATACATTGACATTGATATTTATTTTACTTCAGCCTTTGTCGAAAATT
ATAGGAAATATTCATGGCCACAATAATCAATTTGCCCATTagaaaaattt
ttcttcttcatttttcatcttcgttatctTTCCAAGGAGGTACTCTTTTT
TAACGTTAATTTTTACCAAGATTGATGTTTCAAAATTTACGACGGACTGC
TAAGTTCTTTGGAAGAGAGTTTAATTACAACAAATAATAGGAAGATTGAT
CCCCTCAGGACACTTACCTCCCAGAAAAATCGATATTTACACACCTTTAT
GATGTTTTAGCTATAGAGGAAGAAGGAGGATTTCAATACAGAAGAGAATA
TCCGAAAAGACGTAAGAATTTATAGCAACATGtgccaaaaattgcaaaaa
taatgttaaaaacaaagcgataaaaaaataaaatttgatttggTCTGATT
CGGAGACCTCCGTACTTTTTCGTTTTATACTATTGTGGTTGAACCTGATT
ATCAATAATCCTGTTAGCAAGAATAAAAATGTTTACAAAGTCATTAGTCA
TTGAATTAGGGGAAAAGGGTACCAAAAGAACTGTAACTTAGTAATAATCT
ATTACATTTTCCAGGTGCTGAGAGTTTGGATGGTACAGAGCAGTATCATA
CTACATCTCAACCCATTACAACAGATAGTTGGAGATTAcctaaatcaaaa
tcaaatggaTATACCACAGATCGACCGTGGTATTGGACAACAGATCGATC
CTGGACTACTAGGCGCCCCTGGACCACTGGACGACCCTGGACTACATGGC
ACCCCTGGACCACTGGACGACCCTGGACTACATGGCGCCCATGGACCACA
GATCATCCCTGGACTACTTGGCACCCATGGACCACTGGACGACCCTGGAC
TACTTGGCACCCCTGGACCACTGGACGACCCTGGACTACATGGCGCCCCT
GGACCACAGATCATCCCTGGACTACTTGGCACCCATGGACCACTGGACGA
CCCTGGACTACTTGGCGCCCCTGGACCACTGGACGACCCTGGACTACTTG
GCGCCCATGGTGGACTACAAGTCGACCATCAGGAGGAAGActcttaaaag
aaaaagaacacaTTAATAAATCATGGTAAGAAAAAGTTTCCCAGCCAAAG
ATGTATTGTGTAAGACAAGAAGCCCGtggggcgtgaaggcccagcaactT
AAAAtctcctgggtggaaaatttttgaacaggaggctaatacagcagaat
tagaaaaaaaaacaaggcgCTGTTATCGCAAAAACTTTGGCGAACCGAAC
CACTAACCACAGACACTTCTATTTGAAAAACCCTTTTCGGCCTTTTCGAT
AAGCTGGGcaaattagaaaatttgaatgttttttgaTATCGTAAAGGTAC
GGACATGCAAGTATATATCTccaaactttctttttgcattttaaACTAAG
CAATTTATTTATTTGCTAATGCAATAcatgatttatttttcatagGGGAT
GGCTTGAAGAGTACTTTTACAACAAGAAGAAGAAATAAGCAATGAAGTTG
ATGACACCGTTATCGTATTGTCTACagacttttgttatttttttcatact
CTATTTTTTGCATCTTAGAttttttagtttgttttgtttgttattttttt
tgttgaaatttgtaACGCTTTTTAATTATGTTATGAACGATGTAAAACAT
ATTCGTCCAATATGGTACACCGTACTTAACCTTAATGTTGACCGTGTAAC
TAATCAGAAAACTATTTATGATATAATTTCGGCCTTGGTTGCTACAATCA
TCCGCCGAAATATATCAcaaattttgggtattttaacgtttttcagactT
TGAAGCTCGGGCGAGGATTGCGATTTaagtattttatttgatttttcgat
ttgggggCGGGGTTAAGAATTTAGAGTTAAAACTGTAACCTCCAATCGTA
CTTTAGTAAAGTAACCGGAAACATAACTTTTATactcaaataccaaaatc
aattttttgactatggtcagagccgtTAAGTGTAAGATATTACGGTGGGG
ATTGTAGTCTTGAAACCATATAACTCCCCAAGAAGATATGGCAACCGAGC
CGATTATCTATCATACCTTTGTATCACTTACTAACAATAACCTCTCCATC
ATCTAGTGAGATGTTTCCTATTTGTTCATTTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043532XLOC_043532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069908-exon-scaffold_511-1491911889:343467..343628TCONS_00069908-exon-scaffold_511-1491911889:343467..343628Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1510915933:343467..343628TCONS_00069908-exon-scaffold_511-1510915933:343467..343628Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1575043694:343467..343628TCONS_00069908-exon-scaffold_511-1575043694:343467..343628Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1491911889:343904..343987TCONS_00069908-exon-scaffold_511-1491911889:343904..343987Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1510915933:343904..343987TCONS_00069908-exon-scaffold_511-1510915933:343904..343987Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1575043694:343904..343987TCONS_00069908-exon-scaffold_511-1575043694:343904..343987Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1491911889:344320..344370TCONS_00069908-exon-scaffold_511-1491911889:344320..344370Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1510915933:344320..344370TCONS_00069908-exon-scaffold_511-1510915933:344320..344370Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1575043694:344320..344370TCONS_00069908-exon-scaffold_511-1575043694:344320..344370Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1491911889:346981..347197TCONS_00069908-exon-scaffold_511-1491911889:346981..347197Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1510915933:346981..347197TCONS_00069908-exon-scaffold_511-1510915933:346981..347197Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1575043694:346981..347197TCONS_00069908-exon-scaffold_511-1575043694:346981..347197Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1491911889:347234..347491TCONS_00069908-exon-scaffold_511-1491911889:347234..347491Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1510915933:347234..347491TCONS_00069908-exon-scaffold_511-1510915933:347234..347491Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1575043694:347234..347491TCONS_00069908-exon-scaffold_511-1575043694:347234..347491Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1491911889:347862..348551TCONS_00069908-exon-scaffold_511-1491911889:347862..348551Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1510915933:347862..348551TCONS_00069908-exon-scaffold_511-1510915933:347862..348551Clytia hemisphaericaexon
TCONS_00069908-exon-scaffold_511-1575043694:347862..348551TCONS_00069908-exon-scaffold_511-1575043694:347862..348551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:343467..348551 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	65.1028	45.6441	0	0	106.423	108.392	118.289	165.063	99.9078	122.223	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069908 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top