TCONS_00065207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065207
Unique NameTCONS_00065207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065207 ID=TCONS_00065207|Name=TCONS_00065207|organism=Clytia hemisphaerica|type=transcript|length=400bp
cgttttcaaaatattgctatggtttaaaaaaagtaattatAATTTCTTTA
CCTTTACAGTTAATTTATTGTAAACATTTGTAAGGAATATTAAATACAGC
TGGGCTCGGTTTAAACCGATAATAAAACCCTAGGTTCTTTGTGTTGTCTA
TACTGAATCGGGTACCTCTTAACGTCTTCGTCCTTATCATCGCTGGAACG
TACGGTTGGGTCACGTGACGTGGTCCGAAATACCAATACTTATTAATGTA
ATCCCGAGAGAAATCCATTGGTCCGTTGTCATAGTGATACAAGTCTTTGT
TGTTGGGGTCCTTTTGAGCCATGTTGTTTCGGAGTTCGTAGAAGAAATCT
TTGAACTTGGGGACATGGAATTTGTTGCAATATTCACGTCCGTTCGGGAA
Run BLAST on NCBI

transcript from alignment at scaffold_433:338695..339146-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065207 ID=TCONS_00065207|Name=TCONS_00065207|organism=Clytia hemisphaerica|type=transcript|length=452bp|location=Sequence derived from alignment at scaffold_433:338695..339146- (Clytia hemisphaerica)
CGTTTTCAAAATATTGCTATGGTTTAAAAAAAGTAATTATAATTTCTTTA
CCTTTACAGTTAATTTATTGTAAACATTTGTAAGGAATATTAAANTTCTT
TACCTTTAAAGTTAATTTATTGTAAACATTTGTAAGGAATATTAAATACA
GCTGGGCTCGGTTTAAACCGATAATAAAACCCTAGGTTCTTTGTGTTGTC
TATACTGAATCGGGTACCTCTTAACGTCTTCGTCCTTATCATCGCTGGAA
CGTACGGTTGGGTCACGTGACGTGGTCCGAAATACCAATACTTATTAATG
TAATCCCGAGAGAAATCCATTGGTCCGTTGTCATAGTGATACAAGTCTTT
GTTGTTGGGGTCCTTTTGAGCCATGTTGTTTCGGAGTTCGTAGAAGAAAT
CTTTGAACTTGGGGACATGGAATTTGTTGCAATATTCACGTCCGTTCGGG
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040882XLOC_040882Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065207-exon-scaffold_433-1575043694:339072..339146TCONS_00065207-exon-scaffold_433-1575043694:339072..339146Clytia hemisphaericaexon
TCONS_00065207-exon-scaffold_433-1575043694:338695..339019TCONS_00065207-exon-scaffold_433-1575043694:338695..339019Clytia hemisphaericaexon
TCONS_00065207-exon-scaffold_433-1510915933:339072..339146TCONS_00065207-exon-scaffold_433-1510915933:339072..339146Clytia hemisphaericaexon
TCONS_00065207-exon-scaffold_433-1510915933:338695..339019TCONS_00065207-exon-scaffold_433-1510915933:338695..339019Clytia hemisphaericaexon
TCONS_00065207-exon-scaffold_433-1491911889:339072..339146TCONS_00065207-exon-scaffold_433-1491911889:339072..339146Clytia hemisphaericaexon
TCONS_00065207-exon-scaffold_433-1491911889:338695..339019TCONS_00065207-exon-scaffold_433-1491911889:338695..339019Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:338695..339146 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.371495	0.362266	1.47219	1.85182	0	0	0	0	0	0	0	0	0.123535	0.128292	18.8798	12.9036	11.9918	35.1586	0	0	0	0	0	0.193625	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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