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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065277 ID=TCONS_00065277|Name=TCONS_00065277|organism=Clytia hemisphaerica|type=transcript|length=499bp
cttggatatctaGGCTAGAGGAGCTGTTAAAAAAATGGAGAACGTGAtca
gaaaattaattcaagaagaAATGAATAAAGATTCATTGCAAGCCTCTGAA
AACTCTCAAAGTTCATCTCAAAGTTCAACATCTCAAAATTCATCTCAAGG
CACATCTCAAGACTCTTCTCAAGGCACATCTCAAGACTCATctcgaacaa
aaaaaaagcatAAAACCGAAGGACGATTAACTaatcttttaaacaaaatt
cgACGCCAATCAGCAAATGATACTGATGAAGAAGTGAAGACGAAGGGTAT
CCAGATAAAGTGGAAAAGGTTCTTTCCTGATCTCCTTCAAGACAAAATTG
TACGGGCAGACAGTGGTGGTGGGTTACGGTTGATTGAAGTACCTTATAAA
GTTCCATACTTGTTCAAAGATCTCTTACATGCAGCTACATTGAAATACTT
CAATAAAAACTCATTAAATTCCTTTGGGGAGGCACCACATCAATGTATT Run BLAST on NCBI protein sequence of TCONS_00065277-protein >TCONS_00065277-protein ID=TCONS_00065277-protein|Name=TCONS_00065277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MENVIRKLIQEEMNKDSLQASENSQSSSQSSTSQNSSQGTSQDSSQGTSQ
DSSRTKKKHKTEGRLTNLLNKIRRQSANDTDEEVKTKGIQIKWKRFFPDL
LQDKIVRADSGGGLRLIEVPYKVPYLFKDLLHAATLKYFNKNSLNSFGEA
PHQCI Run BLAST on NCBI transcript from alignment at scaffold_435:194094..198471- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065277 ID=TCONS_00065277|Name=TCONS_00065277|organism=Clytia hemisphaerica|type=transcript|length=4378bp|location=Sequence derived from alignment at scaffold_435:194094..198471- (Clytia hemisphaerica)
CTTGGATATCTAGGCTAGAGGAGCTGGTGAGTGCTAATTAAAATTTGTTG
ATTTGATATTGAAAAGAATATAATATAAGAGATCTAATTTTTACAGCTTT
AGCCGTTTTCAGGAGAATTCCTTTCATTTTCCTAGCTAGGGGTTTTTGAA
GAACTCTCAGAAAGTCATATTTTACGGATGAAAGTTTTTGTGGTTTTAGC
AAAAAAAACTGTGAAAATTAGTTCAGTTAATCAAAAGAAATAACGCAGCA
AAGGGTGCCTTATTGTGATAGGAAAGGGGGCTGAAACTAAATGTTAGAGG
GATAAGAAAAATGCAGAAAACTTTTCTTCACTTGGTGCCCTTCTGAAAAA
TGTCTGCTGAGCACCTGACCACCACCTCCCCAAATTGCTTCTTCCTGCTA
CCATACTACTAAACATGCTCATCTCTAGAAAAAAAAAAGCTTAAGTATAG
TACCGTAGAGTCGTTTNAGTACAGTAGCATGGTGGCTGGGTTGATGCTGT
TGTAAGCATAATAGAAATAGAATTTCTGCTGTTGGCAACCCCTAATTGCC
CCTTTTGGCACCTTTCATTTTTGGCTATTCTCTTTATATTTTGCTCAGTT
TTGATAGAGGAACTGTAGCCTGGATATCAAGGCTGTAAACTATTTCACAG
TCTAGTTTTTGATATTTTTATGTTCTGGTTTACAGCCTGGTCTCCCTAGA
GCGATTTGCATTCTCTTTNNNNNCTTTGGTATGTATTTGTTTATGTTTGA
TTTTTTATTTCGAAGACCAGCCTACAGCTATGTCGAGATTGCAAGACGTA
TGTCGAGATTAAACGACTCTACGGTACTGTTTTCTTCATTTTTATTATCA
TTGTGCAATGAATAATCTAATGCAAATTAATCTGCCCGTTTTCAACAAAC
AATCATTTCACCAATTCCATCATTCTTCCACTGTTCATGTATGACCAGAC
GGTTGTCAATCGAACCAATCGAACATAATCGAATCTCAATCGAACGGCCG
ATTCCTGAGTAATATTCGATTGCGTTCGAGTAAGGTTAGATTGGTTCGAT
TGATTGTTGACTATGTTCGATTGGTTTGATTGATTGTCAATTACATTGGA
TTAATCTTCGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNATCTAATACAATTGAATCAATCGAACGTAATCGAATACAAT
CGAACGTAATCGAAGCAATCGAACAGCAAATCCTGGGTAATATTCGATTG
CGATTCAATTGCGTTTGACAATCGAATTGCAATTATGCGATTGCGTTCAA
TTGCGTTCGATTGATTCGGCGTTCGATTCGTTCGATTGACACCGTCTGGG
TATGATCATGATAGATTTACAAACTTTTGTTTTCCCTATAACTTTTTAAG
GATTGCTTCGATCATAATAAATTTGGTACCTGTTGGAAAGATATTAATGA
GTAGAATAANCTTATTCCTTGGGTGAATACCTGGGGGTGTTATTTCAATT
TTTAAAATATATATATTTTTGGGGCCTGGGGATAAGATAAATTTACAATT
GGGCCTACGAATGATTTGAAAGCTGAAGTTGAGCCCAGTGCGGTTCGCAC
GTTCGTACGTTCGCACGTTCGACAGTTTATTATCTTTGATGACAAAAAGC
CACTTGCATAATACAAACTTTTAGATAAAAATATGTTTTGCATATGCTCT
AAAAGATTCAACAGCTTTTAAGCAGCTCGCAAATTGTTTCCACAAAAGAC
CACAACAAATGATCGGAAGAATCAAAACACTTTACATTTCTTTCACAATT
AATATACTACAGATATATTTTTGATATTTTATTTTCACAGATTATCACGT
GACAGATCCACAAATAGTTCACTGGAAGTTTCGTCTTATCAGAATCCATC
AATTAACCCTGATCACTTGACAATCAGCTCGAGTTGAAGATCATTACTCT
TGTGCTTAGATGGATCTTGAACTCTGTAAGCTTCTTTATAATTTCGTAAA
ACTTGGCTTGTGCGATATTAATTCGTAGGTCAATCTCGGCATCTCCCGTA
GACGGCTCGTCGTACTTTACTTCATCGCCAAGATACCTGAACAGCTTGAC
ATTTTCGATTGGTATATTTTCAAGAGAAAGGATAGACTCAGGATAGACAG
AATCAAAGTCTTTTTCAATATATTTGAAATTAAAAATCATTTTTTTAGCC
TTTTTAATATTGATGTGCAATCCAAATTTGTCGAATAATGAATGGAGAAT
ATTTGGCCTTTTCAAGATCGTGAACATTTCAAGAAAAAGTTCAATATCGT
CAGCATATCCTGACCAATTCACATAATGGTCACCTTGATATCCAGACCTT
CTTTGTTCACGTGTGCATGCAGTCGGACGTATTCTGTATTTTAGTTTAAC
AAATTGGATATTCTTTTGAGCACATTTGTGTTTGAACACCCGCATGACAT
AGTCCATTAATAAATTATAGAGAGGAGATTCTGGACCACCTTGTCTAACT
CCAGTCGTTAGGTTGGATATATCTTCCGGTGTTTCCGATAGGGCAGTGGT
TGTGTGCAAATAGACAGCCTATGGCTGTCCTCATTAACTTAAAGTTGATA
ATGGAACTGAACATGCTTTGGTAGAACCATTCCATATCTCTATAAGAAAT
CTTGATACTGACGAAGAAACAGCTCTTAACTCATTTAGCATAATCACTTC
ACCCCAAAACCAAAGAATTGAAGCTTATTGGTCAATACTCAAGAGAGACA
AGATTGGTTGGTGGAAACGATTTTTTGAAGACCTTACTGATTTGGATTTA
TATGCACACGATCCTGTGATTGTTGAATGCATCAGATTTTGTTTCATGGC
TTTGATTCGTAAAGATCTAGAGTCCATTAAGAATGATTGGAATGTTCACA
TAATATCGAAAAGCAAAAACAGAGGGCCAAGAGGTAGACCAGACACAATG
TATTATTTGCCACATCTGTTTGAAAGTCAAAGCTATTCCATTGATGTTGA
ACAGGAAGAGCTACAAGATCTCTATGTAGCATCTGAATTCAATATACCAG
ACGTGTCTGAGGAATTTAAGGAATTTGCAAGAATTACAATGACTTCAAAT
GGATACCAATCCATGCCCAACAATGTATCTGATGCCCTAGATCTTTACAT
ATTTCTATTACAACAAATAGAAAATCACTCTTGAGAAGTACTTTTGATAA
TTATGTCAACAATTATGTATGCACATTATTTAGTTAGTAACTGAAGGAAT
TGTAAAAAACTGTTAAAACACATTGAATAACATCCTTAGTTTTTGAAGGG
GGAGATTTGGGTATTGAAGAATATAATATTTCTAAAGGAAGTTTTTTCTG
GTGTGTTCTATTTGTATCAGCTACTTTTTATTAACTGTAAAATGATGTGT
AATCAGGTGTAGTGTTTAATTTTCCTTAATCTAGTCTTGTGAATCTGAAT
CTAATTGTTCAATGTTCAGCTCAAAATTACATTCCAAAATTGTGTCCCTT
TTAAATCAAGCCAAAATATTCCATCTGTTTAACACCGTTTTTCAACCGGC
TGTTTGTCTTTCCTGTTTTGGACTGTTTTGTGACCTAAACCCTTTTAAGC
ATAGATGCGTCAGGGTTAATTTCTTTTACTTGGATATCAAGGAGAATTTC
TATTCCTATCCTACTTACAGTTGCATTTTTATCTTTTTTATTTCATTCCT
TTCAGTTAAAAAAATGGAGAACGTGATCAGAAAATTAATTCAAGAAGAAA
TGAATAAAGATTCATTGCAAGCCTCTGAAAACTCTCAAAGTTCATCTCAA
AGTTCAACATCTCAAAATTCATCTCAAGGCACATCTCAAGACTCTTCTCA
AGGCACATCTCAAGACTCATCTCGAACAAAAAAAAAGCATAAAACCGAAG
GACGATTAACTAATCTTTTAAACAAAATTCGACGCCAATCAGCAAATGAT
ACTGATGAAGAAGTGAAGACGAAGGGTATCCAGATAAAGTGGAAAAGGTT
CTTTCCTGATCTCCTTCAAGACAAAATTGTACGGGCAGACAGTGGTGGTG
GGTTACGGTTGATTGAAGTACCTTATAAAGTTCCATACTTGTTCAAAGAT
CTCTTACATGCAGCTACATTGAAATACTTCAATAAAAACTCATTAAATTC
CTTTGGGGAGGCACCACATCAATGTATT Coding sequence (CDS) from alignment at scaffold_435:194094..198471- >TCONS_00065277 ID=TCONS_00065277|Name=TCONS_00065277|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_435:194094..198471- (Clytia hemisphaerica)
ATGGAGAACGTGATCAGAAAATTAATTCAAGAAGAAATGAATAAAGATTC
ATTGCAAGCCTCTGAAAACTCTCAAAGTTCATCTCAAAGTTCAACATCTC
AAAATTCATCTCAAGGCACATCTCAAGACTCTTCTCAAGGCACATCTCAA
GACTCATCTCGAACAAAAAAAAAGCATAAAACCGAAGGACGATTAACTAA
TCTTTTAAACAAAATTCGACGCCAATCAGCAAATGATACTGATGAAGAAG
TGAAGACGAAGGGTATCCAGATAAAGTGGAAAAGGTTCTTTCCTGATCTC
CTTCAAGACAAAATTGTACGGGCAGACAGTGGTGGTGGGTTACGGTTGAT
TGAAGTACCTTATAAAGTTCCATACTTGTTCAAAGATCTCTTACATGCAG
CTACATTGAAATACTTCAATAAAAACTCATTAAATTCCTTTGGGGAGGCA
CCACATCAATGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065277-exon-scaffold_435-1575043694:198446..198471 | TCONS_00065277-exon-scaffold_435-1575043694:198446..198471 | Clytia hemisphaerica | exon |
| TCONS_00065277-exon-scaffold_435-1575043694:194094..194566 | TCONS_00065277-exon-scaffold_435-1575043694:194094..194566 | Clytia hemisphaerica | exon |
| TCONS_00065277-exon-scaffold_435-1510915933:198446..198471 | TCONS_00065277-exon-scaffold_435-1510915933:198446..198471 | Clytia hemisphaerica | exon |
| TCONS_00065277-exon-scaffold_435-1510915933:194094..194566 | TCONS_00065277-exon-scaffold_435-1510915933:194094..194566 | Clytia hemisphaerica | exon |
| TCONS_00065277-exon-scaffold_435-1491911889:198446..198471 | TCONS_00065277-exon-scaffold_435-1491911889:198446..198471 | Clytia hemisphaerica | exon |
| TCONS_00065277-exon-scaffold_435-1491911889:194094..194566 | TCONS_00065277-exon-scaffold_435-1491911889:194094..194566 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_435 | supercontig | scaffold_435:194094..198471 - |
Blast
The following BLAST results are available for this feature:
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