TCONS_00065353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065353
Unique NameTCONS_00065353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2132

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065353 ID=TCONS_00065353|Name=TCONS_00065353|organism=Clytia hemisphaerica|type=transcript|length=2132bp
GCTTCAGTTGAATTTGATGATGAGTCTGTTCGCTTTGGATCCAATGGTAA
AGTTGCGTTcaatttttggacattttcttgtgATAGTGGAGCCACTTGTG
TTGTTTCGACTGAGACTTCGAATACAGGTGCTGCTGTCGTTTTAGGAATA
CCCCTCGGTGGTTTGGGTGGTGATTGGGGGACGGTGTTGACCGGTGCAGT
TATCTCTGGAGTCTTTGTTTCAGGGATTGGTGCTGGTTGAGATGCTAACT
GTTGCTCTGCATTGACGTTTCTACGACCTCGACCTCGATTTCCTCTGCGT
TTCCGGACCGCTGATACCGCTTGTGCCATTACCATACTTCCCAAGTCCTC
CTCACTGAAAGTCGATACTTCTGGAACAAAATCTGGTTTGACCGGCTCTG
GTAGTGGTTTGATTTTGGTCTCCTCTGTTTTCCCTTTCGAAGGAGACAAA
GGCTGTTTGGAAGGAGAGAACGGCTTAGTTGCTTTGTTCTCGTCTCGTCT
CAGTACCGGTGAAAAAGCAGAAGAAGGAGCTGTCTCGGCCTTTGGTGTAG
ACGGGTCAACATGATTCCCACTTCTCTGAATCGGTTTGAATAAGTCTGAA
TCCATGCCTTCGGAAATGGCTTTATTGAGGGAGATTTCCGGATCTTCAAT
ATCGGACCATCCCTGTTTCCGGCTTTCTTCCGGTGCTTCGTCATCAGAGA
CAGATGAAatttcactgaagtcactcatACTTCCTACCGAATATCGTTTG
GTTTCTTTCTCTTGTAGTTTCTTCAGAGCTTCTCGCTCACGTTGGTATTT
CTCAAATAAGAAACCAATATCGTTCGAGTTTCGCTTATTGACTGGTTCGT
TCATATAACCATTCTTAAAGAAATCATCTAAAAGTTTCTCATCTTGTTCC
TTTAGATCAAGAATGTTCCACGAAAGATGTTTCTGTTCGATAACATTACC
GTTAACGTGTGATTCTCGCTTAAACAAGCCTTTCTCGATTACCAATTTAT
TGTCTGTTGGTGACTTTTCAGTCAATTTCGGCTCATCGGCTAGAATGTCC
CAGGAGTCGCGATTTCGTCTGTTTTTCTCGACTGCTCTGCCTTGTATGGT
GGCTTTGATGTGACCGGTAGGAACATTTACAATCACCTCTTTTGGTTTCA
TTCTCTCGTCACTTTGATCGATATGTAAGATATGTAAGTCTGTTTGCACA
TACTCCTGAGCAGCAGGCTCATCAGCGTGAACTCTCATACCGTTCAATAA
CATCTCAGGGCTTTTTTCAACTTCCTGCTCAACGTCTGTCTTTATGATTT
CCTCTGTGATTACAAATCTCTTATTGTCACTTTGTGTTAATAATGAATCT
TGGTCGTTTAACCCTTTGTTTGCTTCATTTAACAACTCTACAATATTATC
CACTTTCGTGTCTGATGTTGGTGTATTTCCTTCGGTCGCCGGTTCATTAG
ACACTATTTTGCTAACATCAGCTTCATCAATAGCTCTCACTGTAGTGTCG
TCAACaggttttatttctttttgagaCTCCGTAACTTGCTTGACCACCGT
TTCAATAACTGCTTCAACTGTCGTGGAAGAAGGTAGTTCGACTTCTGCAT
CCTGTTTCGTTTCTACGTCTTTCGTGGCAGGAAAATCAGCAGGGACGCCC
GCTGTGGCCTTGACTGTAAGAGGTGGAACATCAATCGCAGTCGCTGTAGA
AGTGGTTGAAGGCTCTGTCTCAAAAGCTTCGTCCTCTAAATCAATATCTG
TTTCCTGAGGCAAATTATTCGCTTTCTTCTCGTGTTTCTTTGTTTTCGGT
ATCAGAGACCGAACGGCCGGAGCACGTTTTGTGTCCAATGATTTGGACCG
TGTTTCGAGACCCGTTGATAAACCGTCGTCCGTGGTAGGAATGTCAGCGC
TGTACTTTCGAATGTTTGATCTTCGTGATACGACCACGTACTTCTTTGGT
TTCTTGGTTTCGTTGGTTGGCGTAGAGGGAGACGATTTGAAGGCTTTGTC
TACGTCCGTCACGAACACTCCTTGGTGTTTCTCTTTCAACTTCGGGCTGT
GAAGACAAAACGGTTTGAGCAAATAAAATTATCGACAATTTATGATTTGT
AGACAGAAGACAAATGATAGAGGATTTTATCT
Run BLAST on NCBI

transcript from alignment at scaffold_439:261681..263871+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065353 ID=TCONS_00065353|Name=TCONS_00065353|organism=Clytia hemisphaerica|type=transcript|length=2191bp|location=Sequence derived from alignment at scaffold_439:261681..263871+ (Clytia hemisphaerica)
GCTTCAGTTGAATTTGATGATGAGTCTGTTCGCTTTGGATCCAATGGTAA
AGTTGCGTTcaatttttggacattttcttgtgATAGTGGAGCCACTTGTG
TTGTTTCGACTGAGACTTCGAATACAGGTGCTGCTGTCGTTTTAGGAATA
CCCCTCGGTGGTTTGGGTGGTGATTGGGGGACGGTGTTGACCGGTGCAGT
TATCTCTGGAGTCTTTGTTTCAGGGATTGGTGCTGGTTGAGATGCTAACT
GTTGCTCTGCATTGACGTTTCTACGACCTCGACCTCGATTTCCTCTGCGT
TTCCGGACCGCTGATACCGCTTGTGCCATTACCATACTTCCCAAGTCCTC
CTCACTGAAAGTCGATACTTCTGGAACAAAATCTGGTTTGACCGGCTCTG
GTAGTGGTTTGATTTTGGTCTCCTCTGTTTTCCCTTTCGAAGGAGACAAA
GGCTGTTTGGAAGGAGAGAACGGCTTAGTTGCTTTGTTCTCGTCTCGTCT
CAGTACCGGTGAAAAAGCAGAAGAAGGAGCTGTCTCGGCCTTTGGTGTAG
ACGGGTCAACATGATTCCCACTTCTCTGAATCGGTTTGAATAAGTCTGAA
TCCATGCCTTCGGAAATGGCTTTATTGAGGGAGATTTCCGGATCTTCAAT
ATCGGACCATCCCTGTTTCCGGCTTTCTTCCGGTGCTTCGTCATCAGAGA
CAGATGAAatttcactgaagtcactcatACTTCCTACCGAATATCGTTTG
GTTTCTTTCTCTTGTAGTTTCTTCAGAGCTTCTCGCTCACGTTGGTATTT
CTCAAATAAGAAACCAATATCGTTCGAGTTTCGCTTATTGACTGGTTCGT
TCATATAACCATTCTTAAAGAAATCATCTAAAAGTTTCTCATCTTGTTCC
TTTAGATCAAGAATGTTCCACGAAAGATGTTTCTGTTCGATAACATTACC
GTTAACGTGTGATTCTCGCTTAAACAAGCCTTTCTCGATTACCAATTTAT
TGTCTGTTGGTGACTTTTCAGTCAATTTCGGCTCATCGGCTAGAATGTCC
CAGGAGTCGCGATTTCGTCTGTTTTTCTCGACTGCTCTGCCTTGTATGGT
GGCTTTGATGTGACCGGTAGGAACATTTACAATCACCTCTTTTGGTTTCA
TTCTCTCGTCACTTTGATCGATATGTAAGATATGTAAGTCTGTTTGCACA
TACTCCTGAGCAGCAGGCTCATCAGCGTGAACTCTCATACCGTTCAATAA
CATCTCAGGGCTTTTTTCAACTTCCTGCTCAACGTCTGTCTTTATGATTT
CCTCTGTGATTACAAATCTCTTATTGTCACTTTGTGTTAATAATGAATCT
TGGTCGTTTAACCCTTTGTTTGCTTCATTTAACAACTCTACAATATTATC
CACTTTCGTGTCTGATGTTGGTGTATTTCCTTCGGTCGCCGGTTCATTAG
ACACTATTTTGCTAACATCAGCTTCATCAATAGCTCTCACTGTAGTGTCG
TCAACaggttttatttctttttgagaCTCCGTAACTTGCTTGACCACCGT
TTCAATAACTGCTTCAACTGTCGTGGAAGAAGGTAGTTCGACTTCTGCAT
CCTGTTTCGTTTCTACGTCTTTCGTGGCAGGAAAATCAGCAGGGACGCCC
GCTGTGGCCTTGACTGTAAGAGGTGGAACATCAATCGCAGTCGCTGTAGA
AGTGGTTGAAGGCTCTGTCTCAAAAGCTTCGTCCTCTAAATCAATATCTG
TTTCCTGATGCAAATTNAAGGCTCTGTCTCAAAAGCTTCGTCCTCTAAAT
CAATATCTGTTTCCTGAGGCAAATTATTCGCTTTCTTCTCGTGTTTCTTT
GTTTTCGGTATCAGAGACCGAACGGCCGGAGCACGTTTTGTGTCCAATGA
TTTGGACCGTGTTTCGAGACCCGTTGATAAACCGTCGTCCGTGGTAGGAA
TGTCAGCGCTGTACTTTCGAATGTTTGATCTTCGTGATACGACCACGTAC
TTCTTTGGTTTCTTGGTTTCGTTGGTTGGCGTAGAGGGAGACGATTTGAA
GGCTTTGTCTACGTCCGTCACGAACACTCCTTGGTGTTTCTCTTTCAACT
TCGGGCTGTGAAGACAAAACGGTTTGAGCAAATAAAATTATCGACAATTT
ATGATTTGTAGACAGAAGACAAATGATAGAGGATTTTATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040975XLOC_040975Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065353-exon-scaffold_439-1491911889:261681..263391TCONS_00065353-exon-scaffold_439-1491911889:261681..263391Clytia hemisphaericaexon
TCONS_00065353-exon-scaffold_439-1510915933:261681..263391TCONS_00065353-exon-scaffold_439-1510915933:261681..263391Clytia hemisphaericaexon
TCONS_00065353-exon-scaffold_439-1575043694:261681..263391TCONS_00065353-exon-scaffold_439-1575043694:261681..263391Clytia hemisphaericaexon
TCONS_00065353-exon-scaffold_439-1491911889:263451..263871TCONS_00065353-exon-scaffold_439-1491911889:263451..263871Clytia hemisphaericaexon
TCONS_00065353-exon-scaffold_439-1510915933:263451..263871TCONS_00065353-exon-scaffold_439-1510915933:263451..263871Clytia hemisphaericaexon
TCONS_00065353-exon-scaffold_439-1575043694:263451..263871TCONS_00065353-exon-scaffold_439-1575043694:263451..263871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:261681..263871 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.203236	0	0.636906	0.402868	0.429848	0.187381	0.180537	0.066913	0.998765	0.0182645	0.209411	0.620266	1.03428	3.70896	2.04541	0.0348982	5.77841	4.90986	0.258409	1.22888	5.0475e-08	0	0	0.0478238	0.49096	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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