TCONS_00066708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066708
Unique NameTCONS_00066708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066708 ID=TCONS_00066708|Name=TCONS_00066708|organism=Clytia hemisphaerica|type=transcript|length=474bp
tggtCAATATGCTTCTTTTGATGTTTATGTTCACTGCACATACTATTGTA
ACATCAACGTAATTGCCCAATTCACATTCCCACAAACCTTTAATGATCTC
ATTTAGAAACAAGCTATaatcaattcaaaacaaaatgaagttGATATTAC
TGATTTCGATACTGTCACTTACCTTTGGTGCTCCCTTTTTCACTGGTGAT
AATAGTCAAGAATATCCGGATAGTGAATCTGCAGATCCTGACCAGAATGA
ATCTGATGGCGGAACCGaagaatttaattttcaatacaCTAAACTGACAA
CTGGTGTTTATACAGGATGGAAAATCATGGGCAAATCTCTTTTGCTTGCC
ATTAAAATGACTACACATAATAACTGGTTGGTTGTTGGATTTGTAGGAGT
TAATGAAGAAGTAAACGAGCTTAAGGAATCATTATTTTTCAGGATCAGAC
ACAGCAGTATCAGTGTTAAGGTGG
Run BLAST on NCBI

protein sequence of TCONS_00066708-protein

>TCONS_00066708-protein ID=TCONS_00066708-protein|Name=TCONS_00066708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MKLILLISILSLTFGAPFFTGDNSQEYPDSESADPDQNESDGGTEEFNFQ
YTKLTTGVYTGWKIMGKSLLLAIKMTTHNNWLVVGFVGVNEEVNELKESL
FFRIRHSSISVKV
Run BLAST on NCBI

transcript from alignment at scaffold_458:156..629

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066708 ID=TCONS_00066708|Name=TCONS_00066708|organism=Clytia hemisphaerica|type=transcript|length=474bp|location=Sequence derived from alignment at scaffold_458:156..629 (Clytia hemisphaerica)
CCACCTTAACACTGATACTGCTGTGTCTGATCCTGAAAAATAATGATTCC
TTAAGCTCGTTTACTTCTTCATTAACTCCTACAAATCCAACAACCAACCA
GTTATTATGTGTAGTCATTTTAATGGCAAGCAAAAGAGATTTGCCCATGA
TTTTCCATCCTGTATAAACACCAGTTGTCAGTTTAGtgtattgaaaatta
aattcttCGGTTCCGCCATCAGATTCATTCTGGTCAGGATCTGCAGATTC
ACTATCCGGATATTCTTGACTATTATCACCAGTGAAAAAGGGAGCACCAA
AGGTAAGTGACAGTATCGAAATCAGTAATATCaacttcattttgttttga
attgattATAGCTTGTTTCTAAATGAGATCATTAAAGGTTTGTGGGAATG
TGAATTGGGCAATTACGTTGATGTTACAATAGTATGTGCAGTGAACATAA
ACATCAAAAGAAGCATATTGacca

Coding sequence (CDS) from alignment at scaffold_458:156..629

>TCONS_00066708 ID=TCONS_00066708|Name=TCONS_00066708|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_458:156..629 (Clytia hemisphaerica)
CACCTTAACACTGATACTGCTGTGTCTGATCCTGAAAAATAATGATTCCT
TAAGCTCGTTTACTTCTTCATTAACTCCTACAAATCCAACAACCAACCAG
TTATTATGTGTAGTCATTTTAATGGCAAGCAAAAGAGATTTGCCCATGAT
TTTCCATCCTGTATAAACACCAGTTGTCAGTTTAGtgtattgaaaattaa
attcttCGGTTCCGCCATCAGATTCATTCTGGTCAGGATCTGCAGATTCA
CTATCCGGATATTCTTGACTATTATCACCAGTGAAAAAGGGAGCACCAAA
GGTAAGTGACAGTATCGAAATCAGTAATATCaacttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041714XLOC_041714Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066708-proteinTCONS_00066708-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066708-exon-scaffold_458-1491911889:156..629TCONS_00066708-exon-scaffold_458-1491911889:156..629Clytia hemisphaericaexon
TCONS_00066708-exon-scaffold_458-1510915933:156..629TCONS_00066708-exon-scaffold_458-1510915933:156..629Clytia hemisphaericaexon
TCONS_00066708-exon-scaffold_458-1575043694:156..629TCONS_00066708-exon-scaffold_458-1575043694:156..629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_458supercontigscaffold_458:156..629 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.49139	7.64726	2.96594	2.68491	138.158	108.099	103.273	99.4433	61.8743	76.4202	50.3557	35.3989	30.7099	28.495	33.4386	30.501	25.1979	24.5769	21.6721	35.651	19.5615	20.481	18.6978	24.1412	26.2445	25.3796	38.8252	28.966	23.6156	22.452
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top