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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071159 ID=TCONS_00071159|Name=TCONS_00071159|organism=Clytia hemisphaerica|type=transcript|length=2275bp
aaaatacaatattatatttctttggtttaCTGACTCTCTACAAAAtctgt
ttttccctttttctaaaCATAGAGAGGGAAGCATTTTAAGCTTTAAAGCG
GCGCATCAAGGTACCGCGAAAGCTGCCTTCAAGAATTCCTTCCTTTGATT
TGCAAACTGATTTACAGATTGCAAAACGAAAGATTTCCGACGTTCAAGAA
GTTTGATATAAACGATGCTGAAAGTGTGTAAACAATGGAAACGCTTTGGT
GAACGCAATAATAAACTTTTAGAAGTAATTTATCCTATTAATGGGGCGTT
CCATTTAAACCAAATACGCCAGAAAGAAGATGGGACAAAATGCTCAATCT
AAGATGTGGTGGTTTGCCTTGGTGTTGTTGATTCATGGGTCTCACGGAGA
TGCTCAGCATGCTGCCAAGAAATCACTACACCGAAGATTAAGTGATTATC
CTGTACTCAAACGTTGGGAGATACCAATCAAAGCTAACGTCGTTGGTCGA
AGAAACAAAGACTTATGGGGAGACTCGAAAAAGAAACGTTCATTTTGGGA
GGCAAAGCCCCAGTTTACACTACATGAGCTTGAAATGGAAAACGATCCAG
AGAAGATATATATGGATTTACACTATTCAAGAAATATGCTTGAAGACGAT
TCTGACGCAGATAAAAGTATTGCACAATATAAGAAAGATACATTGGAGTC
GCCACCGTTGTTAAAGACTTCTGCGAAGAAGGCAGAGGTTAAAAAGAAAG
ATGGTAAAAAGTTACTCCAACAAAAAGTAACAAAACATAAGGAAGCAGAC
AAGAAAAGATTAATTGCATTAAAACCTTTCTTGTCAGCCAAACACGTGAC
AACATCaacgaaaaagaagaagaaaaagagaagCAGAAGATCATTGGAGG
ATGAGGAGTTTGAAGAAATTAATACTGATGATGGAGACTTTTCAATGGCG
GGTTTCCAAGATGGTTTGATAGATGAAAGAGAAGATGCAGAGAGAGTCAA
ACGTGATTCTGAATCAATCGCTAACTTCTATTTTGACCAATACGATGATG
ATGGTGTTGATGGTAACGAAGCTGAAACTTACAGTAAAAATAATGGTAAT
AATGTTGATGATGATACCCCTTCTCAAGATCGACAAAAAAGATCCATTGT
TAACAAACCTAAAGATCATAAACTTGCCGTTGATAATTTGAAACGATCAC
GTACAGAAAATATTGCAAAACTGTTTCATAAATCAGTAGCAAAGACACAT
TCTGCCATCGATGCTTCAGCCAAACGATCAAGTTTGTCTTCTAATATTGT
TACTTCCAAGGCTGTTAGTAAAACTGACGGTGATTCTGCTGAGCAAAGAA
AAGCTAAAGCTTTGATTCAAAAGGCATTTTTCAGTTCAAAACATGGGCAC
TTAGTACCAAAAACCTCCGTTCGTCATATAATCCCAGAAAGCTCGACAAC
AATAAAGAAGATAGTCCCTAATGTTGATGTTAAAGTTATATCAAAGAATC
TTCTAGAACAAGATATTGGAGCTGTACCAGGTcttaaaaaagatgaaaat
tcagTAAGCAGGCAACATATAGCACATCCAGAAAAATCAACGGATAGTAT
AAACACAGCAAATGTTGCACGTGCAGTTGCAGTGGCAATGGAACAATTAA
AAAGAGATAAAATGTGGGGCAAAGTATTTGTCCATGTTAGACCAAGTGGT
GAACTTAAGGTTATGGTACAAGAAACTAAAAAGATGGAAGAAGAGACTTG
AAACTATATTGATATCTTGAATAAATAATCTTTTGTACATTTGTATTAAA
CGTTTTTACTTTTCTAGAATTTTACAGTGGGGATTAAGATTTCTATCGAA
ACCCTAACGAGCGAGGATAAAACTCTTTTGTTCCGAGCTCAAAATGTCCA
GTGGAGATGGATTTGGAGTGCAAGttcttttcatcaatttttgaatgagg
atgcaatcaaaatgaatttccCAGTGGACCTCAAATTGTAGAAAGCTCTT
TCCAACTGGGGATGAAATTCTAACCAAATCTCCCGATGCGCTTGGGGTTC
CCACCGGGTTCGTGACAAAGGGTTTTTTCTAGATATGACAGTAATAACCA
GTAGTGAAGGCattaaattaattttgttatctttaaattttttagacCTA
GTTCTTATAGtaatatattgaaaataaaacttacgaatactttttttaaa
tgcacCTTTAACAAGTTTATAGAAATCAAGTAAGGATTAATCATTGTTAT
TAATATTCCAAGGGTTCCAAAATCc Run BLAST on NCBI transcript from alignment at scaffold_6:69787..73586- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071159 ID=TCONS_00071159|Name=TCONS_00071159|organism=Clytia hemisphaerica|type=transcript|length=3800bp|location=Sequence derived from alignment at scaffold_6:69787..73586- (Clytia hemisphaerica)
AAAATACAATATTATATTTCTTTGGTTTACTGACTCTCTACAAAATCTGT
TTTTCCCTTTTTCTAAACATAGAGAGGGAAGCATTTTAAGCTTTAAAGCG
GCGCATCAAGGTACCGCGAAAGCTGCCTTCAAGAATTCCTTCCTTTGATT
TGCAAACTGATTTACAGATTGCAAAACGAAAGATTTCCGACGTTCAAGAA
GTTTGATATAAACGATGCTGAAAGTGTGTAAACAATGGAAACGCTTTGGT
GAACGCAATAATAAACTTTTAGAAGTAATTTATCCTATTAATGGGGCGTT
CCATTTAAACCAAATACGCCAGAAAGAAGATGGGACAAAATGGTAGGGTT
AAAGTACAGATGAATTGTATCAGCATTGGACAATGAAATATGAAAATAGA
TGACTAAAATTGATAAAAATTGCTATAAGTATAAAAATATGTTGAATTAT
ATTGAAGTTCTTTGAAATTTTGTTTCGTTTAGCATTAAAATTTCGATTTT
TTTATATTATAGCTTATAAGCTTCTCAAAGCTAAAAAAACCTCAATCCAA
GCTAGGCTGAAAGGATTCTTCTATATTTCAGCTCAATCTAAGATGTGGTG
GTTTGCCTTGGTGTTGTTGATTCATGGGTCTCACGGAGATGCTCAGCATG
GTAAGATCTTCTTGTTTAAAAAAATTAGCTGTTGGATATTTGCATATTAG
CATATCATAAAATTCCAAATTAAAGTATTCAGCCTTGTCACATTCTGTAC
AAGTACTACAATCCCGGTCATAATATTTAAGAAAAAAAGGGAAATTCCCA
CGAAATCTCATAGCCACAAACGATTTGGAAGCGCTTTAACTTACTTAGGA
TCTGAGGATCCAAAAGTTCAAGAATGGTCCAAAAGGGCTGCGAATATAGC
CTGGAAGTCTATAAACCCCACTCAATTTGCAATATTCGATTAAATTTAAC
AATGAAATAGCCCAAAAGCGACTTTCTCGCCCGAACTTTAATATGCTAAA
AACGAGGAATTAGCCAAATTTATCAATATATTTTGATATTGTAGGTTTTT
ATTAATAATTGGGGAACATCCTACACTGTCGAATTAAACATCTACTCATA
ATACACCACATTTTACACCTCCTTCTCGGTGGAACCAATTCAGCCAGTAG
GGGTAAAAATAACGGACCAAAACTCGATGGGGATTAATATTCTCATTTTC
TTATGGTTGGGGATTTGAATTCTATTGTTTTTGAGCCAGAAAATCCAGTG
GGGATGGAAAAAGTAGCACAATATTTTGCAGTGACGATTTAATTATCTGA
TTATTTTCAGCGAAGGCAAGAGTTAAAATATAATTTTCTACTGGGTACGA
TATTTTGGCCAATTTTTCCAATGAGTCTCATCGGGTATGTGAGAAGGGGG
TATCATTAAAATGTGTTCACACCACGTTAAATTCGTAGTCTGATTGTGTA
TGTAACGGTGGACGTTATGGCCCTATGACTAACCATATATCTATAACCAG
ATATCCAAGCCTTGTCTTTCATCTAACTACAGCTTCAAGGAGTGCCTAAA
GAATTTTCATATTCAAGGCCATTCTTCACAGTGGCTTTTTGATGCATTAA
ACTGTCTCGTTTCAATGTTTTGTATTCTTATTTTTAAATTTCTTTCGTGA
TCCTGAAAATAGAAAAGTAAGTTAAAATATACCGTAATCAAAATCTGGGA
AAGTTTGATTAGCTCTTGATCTATTGCTAGGGGCTCATCTAAAGAACATC
CCCACCCCTTTACGAATATAATTTATTTCACTTTTTTAAAACTCGATCAT
CAATCGGCTGAAATCTAAAAACTCGTAGCATCAAAAGCTTTACGTTTTTA
TTGTAATATTTACATAATCTATGTTTAGCTGCCAAGAAATCACTACACCG
AAGATTAAGTGATTATCCTGTACTCAAACGTTGGGAGATACCAATCAAAG
CTAACGTCGTTGGTCGAAGAAACAAAGACTTATGGGGAGACTCGAAAAAG
AAACGTTCATTTTGGGAGGCAAAGCCCCAGTTTACACTACATGAGCTTGA
AATGGAAAACGATCCAGAGAAGATATATATGGATTTACACTATTCAAGAA
ATATGCTTGAAGACGATTCTGACGCAGATAAAAGTATTGCACAATATAAG
AAAGATACATTGGAGTCGCCACCGTTGTTAAAGACTTCTGCGAAGAAGGC
AGAGGTTAAAAAGAAAGATGGTAAAAAGTTACTCCAACAAAAAGTAACAA
AACATAAGGAAGCAGACAAGAAAAGATTAATTGCATTAAAACCTTTCTTG
TCAGCCAAACACGTGACAACATCAACGAAAAAGAAGAAGAAAAAGAGAAG
CAGAAGATCATTGGAGGATGAGGAGTTTGAAGAAATTAATACTGATGATG
GAGACTTTTCAATGGCGGGTTTCCAAGATGGTTTGATAGATGAAAGAGAA
GATGCAGAGAGAGTCAAACGTGATTCTGAATCAATCGCTAACTTCTATTT
TGACCAATACGATGATGATGGTGTTGATGGTAACGAAGCTGAAACTTACA
GTAAAAATAATGGTAATAATGTTGATGATGATACCCCTTCTCAAGATCGA
CAAAAAAGATCCATTGTTAACAAACCTAAAGATCATAAACTTGCCGTTGA
TAATTTGAAACGATCACGTACAGAAAATATTGCAAAACTGTTTCATAAAT
CAGTAGCAAAGACACATTCTGCCATCGATGCTTCAGCCAAACGATCAAGT
TTGTCTTCTAATATTGTTACTTCCAAGGCTGTTAGTAAAACTGACGGTGA
TTCTGCTGAGCAAAGAAAAGCTAAAGCTTTGATTCAAAAGGCATTTTTCA
GTTCAAAACATGGGCACTTGGTACCAAAAACCTCCGTTCGTCATATAATT
CCACAAAGCTCANAAACATGGGCACTTAGTACCAAAAACCTCCGTTCGTC
ATATAATCCCAGAAAGCTCGACAACAATAAAGAAGATAGTCCCTAATGTT
GATGTTAAAGTTATATCAAAGAATCTTCTAGAACAAGATATTGGAGCTGT
ACCAGGTCTTAAAAAAGATGAAAATTCAGTAAGCAGGCAACATATAGCAC
ATCCAGAAAAATCAACGGATAGTATAAACACAGCAAATGTTGCACGTGCA
GTTGCAGTGGCAATGGAACAATTAAAAAGAGATAAAATGTGGGGCAAAGT
ATTTGTCCATGTTAGACCAAGTGGTGAACTTAAGGTTATGGTACAAGAAA
CTAAAAAGATGGAAGAAGAGACTTGAAACTATATTGATATCTTGAATAAA
TAATCTTTTGTACATTTGTATTAAACGTTTTTACTTTTCTAGAATTTTAC
AGTGGGGATTAAGATTTCTATCGAAACCCTAACGAGCGAGGATAAAACTC
TTTTGTTCCGAGCTCAAAATGTCCAGTGGAGATGGATTTGGAGTGCAAGT
TCTTTTCATCAATTTTTGAATGAGGATGCAATCAAAATGAATTTCCCAGT
GGACCTCAAATTGTAGAAAGCTCTTTCCAACTGGGGATGAAATTCTAACC
AAATCTCCCGATGCGCTTGGGGTTCCCACCGGGTTCGTGACAAAGGGTTT
TTTCTAGATATGACAGTAATAACCAGTAGTGAAGGCATTAAATTAATTTT
GTTATCTTTAAATTTTTTAGACCTAGTTCTTATAGTAATATATTGAAAAT
AAAACTTACGAATACTTTTTTTAAATGCACCTTTAACAAGTTTATAGAAA
TCAAGTAAGGATTAATCATTGTTATTAATATTCCAAGGGTTCCAAAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071159-exon-scaffold_6-1575043694:73245..73586 | TCONS_00071159-exon-scaffold_6-1575043694:73245..73586 | Clytia hemisphaerica | exon |
| TCONS_00071159-exon-scaffold_6-1575043694:72937..73005 | TCONS_00071159-exon-scaffold_6-1575043694:72937..73005 | Clytia hemisphaerica | exon |
| TCONS_00071159-exon-scaffold_6-1575043694:70728..71708 | TCONS_00071159-exon-scaffold_6-1575043694:70728..71708 | Clytia hemisphaerica | exon |
| TCONS_00071159-exon-scaffold_6-1575043694:69787..70669 | TCONS_00071159-exon-scaffold_6-1575043694:69787..70669 | Clytia hemisphaerica | exon |
| TCONS_00071159-exon-scaffold_6-1510915933:73245..73586 | TCONS_00071159-exon-scaffold_6-1510915933:73245..73586 | Clytia hemisphaerica | exon |
| TCONS_00071159-exon-scaffold_6-1510915933:72937..73005 | TCONS_00071159-exon-scaffold_6-1510915933:72937..73005 | Clytia hemisphaerica | exon |
| TCONS_00071159-exon-scaffold_6-1510915933:70728..71708 | TCONS_00071159-exon-scaffold_6-1510915933:70728..71708 | Clytia hemisphaerica | exon |
| TCONS_00071159-exon-scaffold_6-1510915933:69787..70669 | TCONS_00071159-exon-scaffold_6-1510915933:69787..70669 | Clytia hemisphaerica | exon |
| TCONS_00071159-exon-scaffold_6-1491911889:73245..73586 | TCONS_00071159-exon-scaffold_6-1491911889:73245..73586 | Clytia hemisphaerica | exon |
| TCONS_00071159-exon-scaffold_6-1491911889:72937..73005 | TCONS_00071159-exon-scaffold_6-1491911889:72937..73005 | Clytia hemisphaerica | exon |
| TCONS_00071159-exon-scaffold_6-1491911889:70728..71708 | TCONS_00071159-exon-scaffold_6-1491911889:70728..71708 | Clytia hemisphaerica | exon |
| TCONS_00071159-exon-scaffold_6-1491911889:69787..70669 | TCONS_00071159-exon-scaffold_6-1491911889:69787..70669 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:69787..73586 - |
Blast
The following BLAST results are available for this feature:
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