TCONS_00071212 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071212
Unique Name	TCONS_00071212
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1833

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_60:2216..5045+
coding sequence from alignment at scaffold_60:2216..5045+

transcript sequence

>TCONS_00071212 ID=TCONS_00071212|Name=TCONS_00071212|organism=Clytia hemisphaerica|type=transcript|length=1833bp
TTTTACCGAAAGTATtattaaaattgtttttctttttcttacagCTATAA
TAAATAATATTTAAGTAAGAATCAGCCgtaaaattatccaaaaagGAGCA
ATATGTCGTCTGACGAAGAAGATGGCCCACAactgaaaaaacaaagattg
tTTTATGGTAGTTTAGAAGACCAGGAGAGGGAAAGGATATTACGTGAGGA
GAAAGCAGCACAGGAATTGTTACGTGCACAGGGAAGTGAATCAAGCGAGG
AGTCAAGTGACGATGAGgattcaaagaaaaagaaaaagaaacgaaAGAAG
AAGAATCAAGAATCTGACGGCGAATCTGATAGTGATGAGGATACAGCAGT
TGATCGAGCTATGAAAGCTGGTAATATCAACATTGGTGATGTTGAAACCA
TGGAAATGACTCCTGATGCCAAAGCTGAACACCAACAAGAATTAATGGCA
CAATTTGAAAAGCGTAAAATAATCAAATCTATCACCGTGTCTACTGATGA
TAAAGCTGTCAAGGCTCGATTACGTGAACTTGGCCATCCTATTTGTCTCT
TTGGTGAAGGACCAGCTCAACGTCGCGATCGTTTAAGAGATTTGCTCTCA
GTCTTTGAGCAGCTTTTACCAGGATTTACTGCAACTAAGGAAGAATCTGA
GGAAGAAGAAGAGGCAGATGCTCCTGAGGAAGTATGGTACCATGAGGGGA
CCGAGGAGCTGAAAGCCTCACGGTTGTTTATGGCCAAGTACTCTGTCCCT
AGGGCAAGAGATCGTTTGATACAAGCCAAAAAGGACTTAAAAATGCCTGA
AACAGAGAAACTGAAAAAGTCGCAAGAAGTGCAAAGAAAGATGAGAGCAT
TGATTAATTTTTGCAGTCAGATTGGTGATAATCGTCCTCTATCGTATTGT
AATTTGTCACCTAACGGGAAGCTTCTGGCCACTGGATCTTGGAGTGGTTT
ATGTAAATTATGGTCGCTTCCTGATGGTAATGAAGTACGAACTCTGAAGG
GTCATAACGAGAGAGTTGGTGCTATTGTCTTTCACCCTCAATCCACAATA
AGTTTGGAAAGCTCTGCTGCTAATATGGTATCTTGTGGTGTAGATGGTGT
TGTTCAATTATGGAATCTAGAGGATGATGCTCCAATCGGGAAAATCGAAG
GCCACGAGGAGCGAGTTTCAAGCCTTGCTTTTCATCCTTCTGGCAGGTTT
CTAGGTACCTCGTGTTTTGATAAATCATGGCGTTTATGGGATTTGGAGCA
ACAGACTGAGGTTTTACATCAAGAGGGTCACGGTAAGGAAGTCTACAAGA
TTTGTTTCCAACAGGATGGTGCGTTGGCAGTCACAGGTGGTTACGATGCT
AGAGGACTGGTCTGGGATTTGCGTACTGGTCGTAACGTGTTTTCACTTGA
CGGACATTTGAAAAGGGTTCTTGCCGTTGATTTTCACTCAAACGGCTATC
AAGTTGCCACAGGAAGTGAGGACCAAAAATGTATGATTTGGGATTTGAGA
CAACAAAAATCGATTTACACTATTCCAGCTCATAATAATTTAATATCgca
tttgaaattttgtaataaCTTTTTGGTGACAGCTTCTTTTGATGGTGAAG
CGAAAGTCTGGTCATATCCTACATGGACACCATTGAAAACTTTATCAGGA
CATGAACAGAAAGTCACTTGTGTTGATGTTACTCAAGATGAGAATTTTAT
TGTAACAACTTCCTTTGATCGGACATTCAAATTATGGGGACCTGAGTTTT
TAGTaTGTTGAAAATGATAATAATGATAAGATAACATTCATTACAATGTC
TGACATCCGTTGGTTTGATTCTAACAGTGACAC

Run BLAST on NCBI

protein sequence of TCONS_00071212-protein

>TCONS_00071212-protein ID=TCONS_00071212-protein|Name=TCONS_00071212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=552bp
MSSDEEDGPQLKKQRLFYGSLEDQERERILREEKAAQELLRAQGSESSEE
SSDDEDSKKKKKKRKKKNQESDGESDSDEDTAVDRAMKAGNINIGDVETM
EMTPDAKAEHQQELMAQFEKRKIIKSITVSTDDKAVKARLRELGHPICLF
GEGPAQRRDRLRDLLSVFEQLLPGFTATKEESEEEEEADAPEEVWYHEGT
EELKASRLFMAKYSVPRARDRLIQAKKDLKMPETEKLKKSQEVQRKMRAL
INFCSQIGDNRPLSYCNLSPNGKLLATGSWSGLCKLWSLPDGNEVRTLKG
HNERVGAIVFHPQSTISLESSAANMVSCGVDGVVQLWNLEDDAPIGKIEG
HEERVSSLAFHPSGRFLGTSCFDKSWRLWDLEQQTEVLHQEGHGKEVYKI
CFQQDGALAVTGGYDARGLVWDLRTGRNVFSLDGHLKRVLAVDFHSNGYQ
VATGSEDQKCMIWDLRQQKSIYTIPAHNNLISHLKFCNNFLVTASFDGEA
KVWSYPTWTPLKTLSGHEQKVTCVDVTQDENFIVTTSFDRTFKLWGPEFL
VC

Run BLAST on NCBI

transcript from alignment at scaffold_60:2216..5045+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071212 ID=TCONS_00071212|Name=TCONS_00071212|organism=Clytia hemisphaerica|type=transcript|length=2830bp|location=Sequence derived from alignment at scaffold_60:2216..5045+ (Clytia hemisphaerica)
TTTTACCGAAAGTATtattaaaattgtttttctttttcttacagCTATAA
TAAATAATATTTAAGTAAGAATCAGCCgtaaaattatccaaaaagGAGCA
ATATGTCGTCTGACGAAGAAGATGGCCCACAactgaaaaaacaaagattg
tTTTATGGTAGTTTAGAAGACCAGGAGAGGGAAAGGATATTACGTGAGGA
GAAAGCAGCACAGGAATTGTTACGTGCACAGGGAAGTGAATCAAGCGAGG
AGTCAAGTGACGATGAGgattcaaagaaaaagaaaaagaaacgaaAGAAG
AAGAATCAAGGTTTGTTTTACTACCCCAAGCTAAATATTTGGGTTTATTA
AGCTCTCCTTCTATTTTATAGGGGCATTATTCTTCCGGCTTGGAGACAAG
TTTTGCAGGTCTAAAGAAGAAATTATCTGTGAATATCTTTTATTGGGTGC
AGGGGCCTAATCATTGCAATCATAAAGTTTTCTTAGTGTTAGTTGGCCTA
AATTTAGTATTATAGAGGtcgtttcatagaggtcaatagacctgagaaat
acacttctataaattaaattaattaaagTATTTATTTTATTAGAGGCTTT
CTGTTAACTTAGGTAAACATAGTAATAATTTTGGTCCGGTCAAATCACTA
GAATCCGCAACAGTTTTCTTGCAGTGTTCATACAATTTGTTGGGAATTGT
TTGATAATTTCTACCTGagcaaaacttccaaaaaacATCAAACCATCAGG
TTTTAAACAGTTAGTTTTCTTTTCAGAATCTGACGGCGAATCTGATAGTG
ATGAGGATACAGCAGTTGATCGAGCTATGAAAGCTGGTAATATCAACATT
GGTGATGTTGAAACCATGGAAATGACTCCTGATGCCAAAGCTGAACACCA
ACAAGAATTAATGGCACAATTTGAAAAGCGTAAAATAATCAAATCTATCA
CCGTGTCTACTGATGATAAAGCTGTCAAGGCTCGATTACGTGAACTTGGC
CATCCTATTTGTCTCTTTGGTGAAGGACCAGCTCAACGTCGCGATCGTTT
AAGAGATTTGCTCTCAGTCTTTGAGCAGCTTTTACCAGGATTTACTGCAA
CTAAGGAAGAATCTGAGGAAGAAGAAGAGGCAGATGCTCCTGAGGAAGTA
TGGTACCATGAGGGGACCGAGGAGCTGAAAGCCTCACGGTTGTTTATGGC
CAAGTACTCTGTCCCTAGGGCAAGAGATCGTTTGATACAAGCCAAAAAGG
ACTTAAAAATGCCTGAAACAGAGAAACTGAAAAAGTCGCAAGAAGTGCAA
AGAAAGATGAGAGCATTGATTAATTTTTGCAGTCAGATTGGTGATAATCG
TCCTCTATCGTATTGTAATTTGTCACCTAACGGGAAGCTTCTGGCCACTG
GATCTTGGAGTGGTTTATGTAAATTATGGTCGCTTCCTGATGGTAATGAA
GTACGAACTCTGAAGGGTCATAACGAGAGAGTTGGTGCTATTGTCTTTCA
CCCTCAATCCACAATAAGTTTGGAAAGCTCTGCTGCTAATATGGTATCTT
GTGGTGTAGATGGTGTTGTTCAATTATGGAATCTAGAGGATGATGCTCCA
ATCGGGAAAATCGAAGGCCACGAGGAGCGAGTTTCAAGCCTTGCTTTTCA
TCCTTCTGGCAGGTTTCTAGGTACCTCGTGTTTTGATAAATCATGGCGTT
TATGGGATTTGGAGCAACAGACTGAGGTTTTACATCAAGAGGGTCACGGT
AAGGAAGTCTACAAGATTTGTTTCCAACAGGATGGTGCGTTGGCAGTCAC
AGGTGGTTACGATGCTAGAGGACTGGTCTGGGATTTGCGTACTGGTCGTA
ACGTGTTTTCACTTGACGGACATTTGAAAAGGGTTCTTGCCGTTGATTTT
CACTCAAACGGCTATCAAGTTGCCACAGGAAGTGAGGACCAAAAATGTAT
GATTTGGGATTTGAGACAACAAAAATCGATTTACACTATTCCAGCTCATA
ATAATTTAATATCgcatttgaaattttgtaataaCTTTTTGGTGACAGCT
TCTTTTGATGGTGAAGCGAAAGTCTGGTCATATCCTACATGGACACCATT
GAAAACTTTATCAGGACATGAACAGAAAGTCACTTGTGTTGATGTTACTC
AAGATGAGAATTTTATTGTAACAACTTCCTTTGATCGGACATTCAAATTA
TGGGGACCTGAGTTTTTAGTgtaatattttataaatgtatGATGTTTTGG
TCGTTTTAATACCGCGGCTATGTTATGACATAAGACTAAAGGACATGATG
TAAAGAAATCTTCAACCTTGGCCTTTTTGTTTATTTGCTTACCTTTTTTG
ACTTCATAATGTATTacatttttaactctttttttaAAATAGAACAGTTT
TTTAACGGTCGACGCGAAAGATTTTAAATTGGAGATACTCTTTATTTACA
ATTTTAGTCTTATCATATACGAGCTGCCAGTCAATCTTCATATCCAGTCT
CGCATATATGAAAAGATGCGTTTTATCCCACTTGTCattcaaaaaaaaca
atttgtcttttaaattcaaagaaattcCACCATTATTGAAGTTTATCCTG
TTTAAAATGTTCACTCCAGTGTTTTGCTATTTTGTGGAAACCATTCCCAA
ACCAAACTACTATAATAACCCTGACTTGGTTTTCACAATGTAGCCAAAAA
CACTGCACAGTTAAAGCCAATTAagtttaaatgatttttttttcattcta
gaTGTTGAAAATGATAATAATGATAAGATAACATTCATTACAATGTCTGA
CATCCGTTGGTTTGATTCTAACAGTGACAC

Coding sequence (CDS) from alignment at scaffold_60:2216..5045+

>TCONS_00071212 ID=TCONS_00071212|Name=TCONS_00071212|organism=Clytia hemisphaerica|type=CDS|length=4977bp|location=Sequence derived from alignment at scaffold_60:2216..5045+ (Clytia hemisphaerica)
ATGTCGTCTGACGAAGAAGATGGCCCACAactgaaaaaacaaagattgtT
TTATGGTAGTTTAGAAGACCAGGAGAGGGAAAGGATATTACGTGAGGAGA
AAGCAGCACAGGAATTGTTACGTGCACAGGGAAGTGAATCAAGCGAGGAG
TCAAGTGACGATGAGgattcaaagaaaaagaaaaagaaacgaaAGAAGAA
GAATCAAGAATCTGACGGCGAATCTGATAGTGATGAGGATACAGCAGTTG
ATCGAGCTATGAAAGCTGGTAATATCAACATTGGTGATGTTGAAACCATG
GAAATGACTCCTGATGCCAAAGCTGAACACCAACAAGAATTAATGGCACA
ATTTGAAAAGCGTAAAATAATCAAATCTATCACCGTGTCTACTGATGATA
AAGCTGTCAAGGCTCGATTACGTGAACTTGGCCATCCTATTTGTCTCTTT
GGTGAAGGACCAGCTCAACGTCGCGATCGTTTAAGAGATTTGCTCTCAGT
CTTTGAGCAGCTTTTACCAGGATTTACTGCAACTAAGGAAGAATCTGAGG
AAGAAGAAGAGGCAGATGCTCCTGAGGAAGTATGGTACCATGAGGGGACC
GAGGAGCTGAAAGCCTCACGGTTGTTTATGGCCAAGTACTCTGTCCCTAG
GGCAAGAGATCGTTTGATACAAGCCAAAAAGGACTTAAAAATGCCTGAAA
CAGAGAAACTGAAAAAGTCGCAAGAAGTGCAAAGAAAGATGAGAGCATTG
ATTAATTTTTGCAGTCAGATTGGTGATAATCGTCCTCTATCGTATTGTAA
TTTGTCACCTAACGGGAAGCTTCTGGCCACTGGATCTTGGAGTGGTTTAT
GTAAATTATGGTCGCTTCCTGATGGTAATGAAGTACGAACTCTGAAGGGT
CATAACGAGAGAGTTGGTGCTATTGTCTTTCACCCTCAATCCACAATAAG
TTTGGAAAGCTCTGCTGCTAATATGGTATCTTGTGGTGTAGATGGTGTTG
TTCAATTATGGAATCTAGAGGATGATGCTCCAATCGGGAAAATCGAAGGC
CACGAGGAGCGAGTTTCAAGCCTTGCTTTTCATCCTTCTGGCAGGTTTCT
AGGTACCTCGTGTTTTGATAAATCATGGCGTTTATGGGATTTGGAGCAAC
AGACTGAGGTTTTACATCAAGAGGGTCACGGTAAGGAAGTCTACAAGATT
TGTTTCCAACAGGATGGTGCGTTGGCAGTCACAGGTGGTTACGATGCTAG
AGGACTGGTCTGGGATTTGCGTACTGGTCGTAACGTGTTTTCACTTGACG
GACATTTGAAAAGGGTTCTTGCCGTTGATTTTCACTCAAACGGCTATCAA
GTTGCCACAGGAAGTGAGGACCAAAAATGTATGATTTGGGATTTGAGACA
ACAAAAATCGATTTACACTATTCCAGCTCATAATAATTTAATATCgcatt
tgaaattttgtaataaCTTTTTGGTGACAGCTTCTTTTGATGGTGAAGCG
AAAGTCTGGTCATATCCTACATGGACACCATTGAAAACTTTATCAGGACA
TGAACAGAAAGTCACTTGTGTTGATGTTACTCAAGATGAGAATTTTATTG
TAACAACTTCCTTTGATCGGACATTCAAATTATGGGGACCTGAGTTTTTA
GTaTGTTGAATGTCGTCTGACGAAGAAGATGGCCCACAactgaaaaaaca
aagattgtTTTATGGTAGTTTAGAAGACCAGGAGAGGGAAAGGATATTAC
GTGAGGAGAAAGCAGCACAGGAATTGTTACGTGCACAGGGAAGTGAATCA
AGCGAGGAGTCAAGTGACGATGAGgattcaaagaaaaagaaaaagaaacg
aaAGAAGAAGAATCAAGAATCTGACGGCGAATCTGATAGTGATGAGGATA
CAGCAGTTGATCGAGCTATGAAAGCTGGTAATATCAACATTGGTGATGTT
GAAACCATGGAAATGACTCCTGATGCCAAAGCTGAACACCAACAAGAATT
AATGGCACAATTTGAAAAGCGTAAAATAATCAAATCTATCACCGTGTCTA
CTGATGATAAAGCTGTCAAGGCTCGATTACGTGAACTTGGCCATCCTATT
TGTCTCTTTGGTGAAGGACCAGCTCAACGTCGCGATCGTTTAAGAGATTT
GCTCTCAGTCTTTGAGCAGCTTTTACCAGGATTTACTGCAACTAAGGAAG
AATCTGAGGAAGAAGAAGAGGCAGATGCTCCTGAGGAAGTATGGTACCAT
GAGGGGACCGAGGAGCTGAAAGCCTCACGGTTGTTTATGGCCAAGTACTC
TGTCCCTAGGGCAAGAGATCGTTTGATACAAGCCAAAAAGGACTTAAAAA
TGCCTGAAACAGAGAAACTGAAAAAGTCGCAAGAAGTGCAAAGAAAGATG
AGAGCATTGATTAATTTTTGCAGTCAGATTGGTGATAATCGTCCTCTATC
GTATTGTAATTTGTCACCTAACGGGAAGCTTCTGGCCACTGGATCTTGGA
GTGGTTTATGTAAATTATGGTCGCTTCCTGATGGTAATGAAGTACGAACT
CTGAAGGGTCATAACGAGAGAGTTGGTGCTATTGTCTTTCACCCTCAATC
CACAATAAGTTTGGAAAGCTCTGCTGCTAATATGGTATCTTGTGGTGTAG
ATGGTGTTGTTCAATTATGGAATCTAGAGGATGATGCTCCAATCGGGAAA
ATCGAAGGCCACGAGGAGCGAGTTTCAAGCCTTGCTTTTCATCCTTCTGG
CAGGTTTCTAGGTACCTCGTGTTTTGATAAATCATGGCGTTTATGGGATT
TGGAGCAACAGACTGAGGTTTTACATCAAGAGGGTCACGGTAAGGAAGTC
TACAAGATTTGTTTCCAACAGGATGGTGCGTTGGCAGTCACAGGTGGTTA
CGATGCTAGAGGACTGGTCTGGGATTTGCGTACTGGTCGTAACGTGTTTT
CACTTGACGGACATTTGAAAAGGGTTCTTGCCGTTGATTTTCACTCAAAC
GGCTATCAAGTTGCCACAGGAAGTGAGGACCAAAAATGTATGATTTGGGA
TTTGAGACAACAAAAATCGATTTACACTATTCCAGCTCATAATAATTTAA
TATCgcatttgaaattttgtaataaCTTTTTGGTGACAGCTTCTTTTGAT
GGTGAAGCGAAAGTCTGGTCATATCCTACATGGACACCATTGAAAACTTT
ATCAGGACATGAACAGAAAGTCACTTGTGTTGATGTTACTCAAGATGAGA
ATTTTATTGTAACAACTTCCTTTGATCGGACATTCAAATTATGGGGACCT
GAGTTTTTAGTaTGTTGAATGTCGTCTGACGAAGAAGATGGCCCACAact
gaaaaaacaaagattgtTTTATGGTAGTTTAGAAGACCAGGAGAGGGAAA
GGATATTACGTGAGGAGAAAGCAGCACAGGAATTGTTACGTGCACAGGGA
AGTGAATCAAGCGAGGAGTCAAGTGACGATGAGgattcaaagaaaaagaa
aaagaaacgaaAGAAGAAGAATCAAGAATCTGACGGCGAATCTGATAGTG
ATGAGGATACAGCAGTTGATCGAGCTATGAAAGCTGGTAATATCAACATT
GGTGATGTTGAAACCATGGAAATGACTCCTGATGCCAAAGCTGAACACCA
ACAAGAATTAATGGCACAATTTGAAAAGCGTAAAATAATCAAATCTATCA
CCGTGTCTACTGATGATAAAGCTGTCAAGGCTCGATTACGTGAACTTGGC
CATCCTATTTGTCTCTTTGGTGAAGGACCAGCTCAACGTCGCGATCGTTT
AAGAGATTTGCTCTCAGTCTTTGAGCAGCTTTTACCAGGATTTACTGCAA
CTAAGGAAGAATCTGAGGAAGAAGAAGAGGCAGATGCTCCTGAGGAAGTA
TGGTACCATGAGGGGACCGAGGAGCTGAAAGCCTCACGGTTGTTTATGGC
CAAGTACTCTGTCCCTAGGGCAAGAGATCGTTTGATACAAGCCAAAAAGG
ACTTAAAAATGCCTGAAACAGAGAAACTGAAAAAGTCGCAAGAAGTGCAA
AGAAAGATGAGAGCATTGATTAATTTTTGCAGTCAGATTGGTGATAATCG
TCCTCTATCGTATTGTAATTTGTCACCTAACGGGAAGCTTCTGGCCACTG
GATCTTGGAGTGGTTTATGTAAATTATGGTCGCTTCCTGATGGTAATGAA
GTACGAACTCTGAAGGGTCATAACGAGAGAGTTGGTGCTATTGTCTTTCA
CCCTCAATCCACAATAAGTTTGGAAAGCTCTGCTGCTAATATGGTATCTT
GTGGTGTAGATGGTGTTGTTCAATTATGGAATCTAGAGGATGATGCTCCA
ATCGGGAAAATCGAAGGCCACGAGGAGCGAGTTTCAAGCCTTGCTTTTCA
TCCTTCTGGCAGGTTTCTAGGTACCTCGTGTTTTGATAAATCATGGCGTT
TATGGGATTTGGAGCAACAGACTGAGGTTTTACATCAAGAGGGTCACGGT
AAGGAAGTCTACAAGATTTGTTTCCAACAGGATGGTGCGTTGGCAGTCAC
AGGTGGTTACGATGCTAGAGGACTGGTCTGGGATTTGCGTACTGGTCGTA
ACGTGTTTTCACTTGACGGACATTTGAAAAGGGTTCTTGCCGTTGATTTT
CACTCAAACGGCTATCAAGTTGCCACAGGAAGTGAGGACCAAAAATGTAT
GATTTGGGATTTGAGACAACAAAAATCGATTTACACTATTCCAGCTCATA
ATAATTTAATATCgcatttgaaattttgtaataaCTTTTTGGTGACAGCT
TCTTTTGATGGTGAAGCGAAAGTCTGGTCATATCCTACATGGACACCATT
GAAAACTTTATCAGGACATGAACAGAAAGTCACTTGTGTTGATGTTACTC
AAGATGAGAATTTTATTGTAACAACTTCCTTTGATCGGACATTCAAATTA
TGGGGACCTGAGTTTTTAGTaTGTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044267	XLOC_044267	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00071212-protein	TCONS_00071212-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00071212-exon-scaffold_60-1491911889:2216..2525	TCONS_00071212-exon-scaffold_60-1491911889:2216..2525	Clytia hemisphaerica	exon
TCONS_00071212-exon-scaffold_60-1510915933:2216..2525	TCONS_00071212-exon-scaffold_60-1510915933:2216..2525	Clytia hemisphaerica	exon
TCONS_00071212-exon-scaffold_60-1575043694:2216..2525	TCONS_00071212-exon-scaffold_60-1575043694:2216..2525	Clytia hemisphaerica	exon
TCONS_00071212-exon-scaffold_60-1491911889:2992..4435	TCONS_00071212-exon-scaffold_60-1491911889:2992..4435	Clytia hemisphaerica	exon
TCONS_00071212-exon-scaffold_60-1510915933:2992..4435	TCONS_00071212-exon-scaffold_60-1510915933:2992..4435	Clytia hemisphaerica	exon
TCONS_00071212-exon-scaffold_60-1575043694:2992..4435	TCONS_00071212-exon-scaffold_60-1575043694:2992..4435	Clytia hemisphaerica	exon
TCONS_00071212-exon-scaffold_60-1491911889:4967..5045	TCONS_00071212-exon-scaffold_60-1491911889:4967..5045	Clytia hemisphaerica	exon
TCONS_00071212-exon-scaffold_60-1510915933:4967..5045	TCONS_00071212-exon-scaffold_60-1510915933:4967..5045	Clytia hemisphaerica	exon
TCONS_00071212-exon-scaffold_60-1575043694:4967..5045	TCONS_00071212-exon-scaffold_60-1575043694:4967..5045	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:2216..5045 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.9544	29.4768	21.2699	23.7198	18.5634	21.4164	19.4124	14.5	21.4324	25.801	12.2324	11.564	11.6285	10.6708	12.9219	13.5888	23.3061	14.2763	5.38661	6.12492	14.1214	12.5822	31.219	30.3152	15.1325	13.5007	11.18	7.20462	23.5231	22.2528

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR014906	PRP4-like
IPR015943	WD40/YVTN_repeat-like_dom
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00071212 vs. Swiss-Prot (Human)
Match: PRP4 (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4 PE=1 SV=2)

HSP 1 Score: 542.347 bits (1396), Expect = 0.000e+0
Identity = 269/554 (48.56%), Postives = 364/554 (65.70%), Query Frame = 1

Query:  106 SSDEEDGPQLKKQRLFYGSLEDQERERILREEKAAQELLRAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVDRAMKAGNINIGDVETMEMTPDAKAEHQQELMAQFEKRKIIKSITVSTDDKAVKARLRELGHPICLFGEGPAQRRDRLRDLLSVFEQLLPGFTA----TKXXXXXXXXXXXXXXVWYHEGTEELKASRLFMAKYSVPRARDRLIQAKKDLKMPETEKLKKSQEVQRKMRALINFCSQIGDNRPLSYCNLSPNGKLLATGSWSGLCKLWSLPDGNEVRTLKGHNERVGAIVFHPQSTISLESSAANMVSCGVDGVVQLWNLEDDAPIGKIEGHEERVSSLAFHPSGRFLGTSCFDKSWRLWDLEQQTEVLHQEGHGKEVYKICFQQDGALAVTGGYDARGLVWDLRTGRNVFSLDGHLKRVLAVDFHSNGYQVATGSEDQKCMIWDLRQQKSIYTIPAHNNLISHLKF---CNNFLVTASFDGEAKVWSYPTWTPLKTLSGHEQKVTCVDVTQDENFIVTTSFDRTFKLWGPE 1746
            + D+   P +KK  ++YGSLE++ERER+ + E     +L   G                                      +   ++AGNINI   E  E+  +  +E Q E++A+FE+RK  + I VSTDD  VKA LR LG PI LFGEGPA+RR+RLR++LSV      G  A     K++ + ++  +  ++ WYHEG   LK +RL++A YS+PRA  RL +A+   ++PET +  + QE+ + +R+L NFCSQIGD+RP+SYC+ SPN K+LAT  WSGLCKLWS+PD N + TL+GHN  VGAIVFHP+ST+SL+    N+ SC  DG V+LW+L+ D P+  IEGH  RV+ + +HPSGRFLGT+C+D+SWRLWDLE Q E+LHQEGH   VY I F QDG+LA TGG DA G VWDLRTGR +  L+GHLK +  ++F  NGY +ATGS D  C +WDLRQ++ +YTIPAH NL++ +KF     NFL+T ++D  AK+W++P W+PLKTL+GHE KV  +D++ D   I T S+DRTFKLW  E
Sbjct:   16 APDDLVAPVVKKPHIYYGSLEEKERERLAKGESG---ILGKDG--------------------------------------LKAGIEAGNINITSGEVFEIE-EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNILSVV-----GTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE 522

The following BLAST results are available for this feature:

BLAST of TCONS_00071212 vs. Swiss-Prot (Human)

BLAST of TCONS_00071212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PRP4	0.000e+0	48.56	U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo...	[more]

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TCONS_00071212 (transcript) - C. hemisphaerica