|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067192 ID=TCONS_00067192|Name=TCONS_00067192|organism=Clytia hemisphaerica|type=transcript|length=2618bp
GATATTTAAATTCTTGAAATATGgacgaaaatgaaaatgaaattttttga
acaTATTCTCTCAGCTAAGGGtggcaaaaacatcaaaaatgggcaaaatt
ttaaaaatttcttgcAAGCCTAGTATATACAGGCTCAGGCTCTTAGTGGA
AAGTTTTCCTCCTTGTTGTTGCCTCACAACACTTTTGCTGAGATGAGCAA
GCCAGCAATcctcaaaatggcaaatttcaaatgaaaagcCTAGAAAATAG
CACAAAATGGGTGCTTTAAATAAAGAGCCTCAACAACTACTTAAAAGCca
ccaaaaatttaatttttcttctctcaACTCTAGTTAGCACCTTGGAgcct
ttgtttattttttcaattgttttcaaatttcttgGGGGGACActcaatca
aagaaaaaagatcCTTACAGTACTGtgcatttttaaaaagattatttaCC
ATTTTGAGGCATAATATGGTCAGATTTCCCAAACTTTACATCCTTAGATG
CACTTTTGCTCATATTTCGACCCTTACTGTGCAATTTGGGAAGCTTGGGA
AAAGGACATTGTCCAACCCAAATAGCTTCTTGTTCAACCCAAAAAGCGTG
actttcaagctaaagcaaccttGAACCAACATTTTGTCCTACCCAGTCCT
ACCtgtaaaatctttattttgaccCTTGTGGTAGGTCGTTTATCTGTAAG
GAATATCAAAATTAGGTCACAGACAAGTTGTCAGGAACTGAACTTTAAAA
TTGACTGGATATGCCATATATATATCCAGCCTCATTTTCAGAGTTCGCTG
TTTTTTGATGGATTAGTGCAATTGTTTTGGCAGGGATTCTGATGCAATGT
ATTGCAATGCATTACACACTCACCCTTTCATATGTTTAAGCTGGCTAAGA
ATGAATTATTGCTAAAAAGTATATATATTCTCTTTTGTATCAAGGGAACC
AAGGGAATATGCTTCTGCTGACCTAAATTTCATTGGTTTTATtgctattt
tttagaaatatagaATATTAAAATCAACATGATGAAATTATTTGTTCTGG
CCAGCATTGCAACAGCTGCTCTGTGTATGACCATTGAAAAAGCTGAATTA
ATTGCAGATGAAGGATGGCAATTATGGAAATCTACACATAATGCAGCTTA
TGCGGACTTTAATGAAGAAAAAGTTAGATATACAATTTGGCAAGACAATG
TTAGACGTATTACCCAATTCAATCGTAACAACAAAAAGATGTCTTTAGGT
ATGAATCATTTTGGGGATATGACAACTACTGAATTCAAATCGAAAATGAA
TGGTTACTTGGCTGGAAGCAAACAACAAGGATCTACTTTCATGACTCCAA
ACTTTGCTGAGATTCCAGATTCTGTTGATTGGAGAAAAAAGGATGGATAT
GTTTCTGAAGTCAAAAATCAAGGACAATGTGGATCATGCTGGGCTTTCTC
TACTACTGGAGCTTTGGAAGGACAACATTTCAGAAAGACCGGTCAAAAGG
TTGATTTGAGTGAACAAAACTTGGTTGATTGCTCTAAAGATTATGGAAAC
TATGGATGTCAAGGTGGATTAATGGACAATGCTTTCAAATACATCAAAGC
CAATGGGGGGATTGATACTGAGAAAAGTTACCCATACGAAGGAAAAaatc
ttCAATGCAGATTCAAGAAATCCAGCGTCGGAGCTGACGATACCGGATTT
GTTGATATCCCAAAAGGCAATGAAGATGCTTTGAAGAATGCCTCAGCCAC
TGTCGGTCCAATCTCGGTTGCTATTGATGCTTCACACTTCTCATTCCAAT
TTTACAAAGAAGGTGTTTATGATGAACCACAATGCAGTAGCACCCAACTG
GATCACGGCGTCTTGGTTGTCGGTTATGGATCCATGAATGGACAAGACTA
CTGGATCGTCAAAAACAGctGGGGACCAGGATGGGGCTTGAAAGGATACA
TCATGATGAGCCGTAACAAGAACGACCAATGCGGTATCGCTTCATCCGCA
TCTTACCCACTCGTCTAAGATGTTTTTATACagcttttcgaccgtagcca
ccaattgccgcgcgggcatttttttgtccgctttatcccactaaaaccgt
cccagtcccagtcttttttaatagacaaaagaaaaatgtgtGAAAAAAGG
AGTGGCACGGGCCTGACTGTGCGACcacggtcgaaaagatgtattAGTGA
TGTTGTATATTTCCAGGTGCCCTAAATGTTAATCTTTTCTAGGAACTGAA
AACTTTTCTTTCTGTTGACCATCTTTGATAGAGTTTTGGTTTCTGATAAC
TTCGTTTCGTAAAAACTTGACACCtgggaaaattctttttgttttatatA
GATGTTAACAAATAATTTCTTGTCAACGAGCATTTGTACTATTGATGCAA
TAAGCCTTATTTTGCTTagtatttaaaatttgaaaacgagtttttaaaaa
aataggttaaaatagtaaaaaatccaacataaaaaagtatttaaaatttt
gacgttgtatttttgtttttatttatcgCCGTTATGACGAAAgcttcttt
gtatttttttttctaatttttgatggaataaaaaaccctgaaaaatagtg
ataatatttcacaaaata Run BLAST on NCBI transcript from alignment at scaffold_466:261143..264637+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067192 ID=TCONS_00067192|Name=TCONS_00067192|organism=Clytia hemisphaerica|type=transcript|length=3495bp|location=Sequence derived from alignment at scaffold_466:261143..264637+ (Clytia hemisphaerica)
GATATTTAAATTCTTGAAATATGgacgaaaatgaaaatgaaattttttga
acaTATTCTCTCAGCTAAGGGtggcaaaaacatcaaaaatgggcaaaatt
ttaaaaatttcttgcAAGCCTAGTATATACAGGCTCAGGCTCTTAGTGGA
AAGTTTTCCTCCTTGTTGTTGCCTCACAACACTTTTGCTGAGATGAGCAA
GCCAGCAATcctcaaaatggcaaatttcaaatgaaaagcCTAGAAAATAG
CACAAAATGGGTGCTTTAAATAAAGAGCCTCAACAACTACTTAAAAGCca
ccaaaaatttaatttttcttctctcaACTCTAGTTAGCACCTTGGAgcct
ttgtttattttttcaattgttttcaaatttcttgGGGGGACActcaatca
aagaaaaaagatcCTTACAGTACTGtgcatttttaaaaagattatttaCC
ATTTTGAGGCATAATATGGTCAGATTTCCCAAACTTTACATCCTTAGATG
CACTTTTGCTCATATTTCGACCCTTACTGTGCAATTTGGGAAGCTTGGGA
AAAGGACATTGTCCAACCCAAATAGCTTCTTGTTCAACCCAAAAAGCGTG
actttcaagctaaagcaaccttGAACCAACATTTTGTCCTACCCAGTCCT
ACCtgtaaaatctttattttgaccCTTGTGGTAGGTCGTTTATCTGTAAG
GAATATCAAAATTAGGTCACAGACAAGTTGTCAGGAACTGAACTTTAAAA
TTGACTGGATATGCCATATATATATCCAGCCTCATTTTCAGAGTTCGCTG
TTTTTTGATGGATTAGTGCAATTGTTTTGGCAGGGATTCTGATGCAATGT
ATTGCAATGCATTACACACTCACCCTTTCATATGTTTAAGCTGGCTAAGA
ATGAATTATTGCTAAAAAGTATATATATTCTCTTTTGTATCAAGGGAACC
AAGGGAATATGCTTCTGCTGACCTAAATTTCATTGGTTTTATtgctattt
tttagaaatatagaATATTAAAATCAACATGATGAAATTATTTGTTCTGG
CCAGCATTGCAACAGCTGCTCTGTGTATGACCATTGAAAAAGCTGAATTA
ATTGCAGATGAAGGATGGCAATTATGGAAATCTACACATAATGCAGCTTA
TGCGGACTTTAATGAAGAAAAAGTTAGATATACAATTTGGCAAGACAATG
TTAGACGTATTACCCAATTCAATCGTAACAACAAAAAGATGTCTTTAGGT
ATGAATCATTTTGGGGATATGACAACTACTGAATTCAAATCGAAAATGAA
TGGTTACTTGGCTGGAAGCAAACAACAAGGATCTACTTTCATGACTCCAA
ACTTTGCTGAGATTCCAGATTCTGTTGATTGGAGAAAAAAGGATGGATAT
GTTTCTGAAGTCAAAAATCAAGGACAATGTGGATCATGCTGGGCTTTCTC
TACTGTAAGTTTTCGAATTCATCACTTGGCTGAACTGTGTTTGTTATTGG
GAAAGCTAAGCTCCATTTAATTTAACTAATTTGGTTACAGTGGGAGAGTC
GTGTTACCCTCATGTTTGCAACAATAAAATTATGTTGTTTTTTAACAAAC
AGCTAGGATTATATTTTGGGAGTTGCActagtttttccaaaaatttgtaa
aatttaatgcttgacaaaattttcatacccaagatttttgccaaaaactc
TTGTCTTCTGTAAAAACCCTAGGAAGTGGAAAGAAATTAGTTTCGGATGT
CCAAAAATAAGCCCCACAAAAGTTTTTATCCACTTCAGGTAAAGGGTTGT
GTgtacagtataattgtttttcatCACAAAATTAATGTTTGTTGTGTCTG
TTTTTATAGACTGGAGCTTTGGAAGGACAACATTTCAGAAAGACCGGTCA
AAAGGTTGATTTGAGTGAACAAAACTTGGTTGATTGCTCTAAAGATTATG
GAAACTATGGATGTCAAGGTGGATTAATGGACAATGCTTTCAAATACATC
AAAGCCAATGGGGGGATTGATACTGAGAAAAGTTACCCATACGAAGGAAA
AGTAAGAGCTATTTCTGGTTGCTGCAATATACATACATATAATTCAGTTA
TCTTTAATTAATGTAATATAAATGATTCATGGCTTCTTGAATTGATAAGA
AGGCTTTTAAAGTACGAAAATCTCTGAAATTATCTTATTTGTTTAACCCG
TTTTTCTCGTTTCCTTATTATTTAGAGACAGTAATTTTGAAGTCTTTTGA
GGAGATTTCTATAATTGACTAGTTTCTGCTTGTTTCAAATATCTTGTGTT
TGATAACTGTAGATCCTTACCCATCTggctttttaaataaaattattctc
aattttttttacagaatcttCAATGCAGATTCAAGAAATCCAGCGTCGGA
GCTGACGATACCGGATTTGTTGATATCCCAAAAGGCAATGAAGATGCTTT
GAAGAATGCCTCAGCCACTGTCGGTCCAATCTCGGTTGCTATTGATGCTT
CACACTTCTCATTCCAATTTTACAAAGAAGGTGTTTATGATGAACCACAA
TGCAGTAGCACCCAACTGGATCACGGCGTCTTGGTTGTCGGTTATGGATC
CATGAATGGACAAGACTACTGGATCGTCAAAAACAGGTAAGAGTTGAACA
AATTGATCCAATAAAACATTCTATCGTAACatcttgaagaaaaaaatcga
tttaAACAGCACACTAAATTGAAACTGCTATTGAAAACAATCAtcgaata
ttttaaaatataatttaatgatttttgttttctttctttttttagctGGG
GACCAGGATGGGGCTTGAAAGGATACATCATGATGAGCCGTAACAAGAAC
GACCAATGCGGTATCGCTTCATCCGCATCTTACCCACTCGTCTAAGATGT
TTTTATACagcttttcgaccgtagccaccaattgccgcgcgggcattttt
ttgtccgctttatcccactaaaaccgtcccagtcccagtcttttttaata
gacaaaagaaaaatgtgtGAAAAAAGGAGTGGCACGGGCCTGACTGTGCG
ACcacggtcgaaaagatgtattAGTGATGTTGTATATTTCCAGGTGCCCT
AAATGTTAATCTTTTCTAGGAACTGAAAACTTTTCTTTCTGTTGACCATC
TTTGATAGAGTTTTGGTTTCTGATAACTTCGTTTCGTAAAAACTTGACAC
CtgggaaaattctttttgttttatatAGATGTTAACAAATAATTTCTTGT
CAACGAGCATTTGTACTATTGATGCAATAAGCCTTATTTTGCTTagtatt
taaaatttgaaaacgagtttttaaaaaaataggttaaaatagtaaaaaat
ccaacataaaaaagtatttaaaattttgacgttgtatttttgtttttatt
tatcgCCGTTATGACGAAAgcttctttgtatttttttttctaatttttga
tggaataaaaaaccctgaaaaatagtgataatatttcacaaaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067192-exon-scaffold_466-1491911889:261143..262596 | TCONS_00067192-exon-scaffold_466-1491911889:261143..262596 | Clytia hemisphaerica | exon |
| TCONS_00067192-exon-scaffold_466-1510915933:261143..262596 | TCONS_00067192-exon-scaffold_466-1510915933:261143..262596 | Clytia hemisphaerica | exon |
| TCONS_00067192-exon-scaffold_466-1575043694:261143..262596 | TCONS_00067192-exon-scaffold_466-1575043694:261143..262596 | Clytia hemisphaerica | exon |
| TCONS_00067192-exon-scaffold_466-1491911889:263002..263193 | TCONS_00067192-exon-scaffold_466-1491911889:263002..263193 | Clytia hemisphaerica | exon |
| TCONS_00067192-exon-scaffold_466-1510915933:263002..263193 | TCONS_00067192-exon-scaffold_466-1510915933:263002..263193 | Clytia hemisphaerica | exon |
| TCONS_00067192-exon-scaffold_466-1575043694:263002..263193 | TCONS_00067192-exon-scaffold_466-1575043694:263002..263193 | Clytia hemisphaerica | exon |
| TCONS_00067192-exon-scaffold_466-1491911889:263507..263778 | TCONS_00067192-exon-scaffold_466-1491911889:263507..263778 | Clytia hemisphaerica | exon |
| TCONS_00067192-exon-scaffold_466-1510915933:263507..263778 | TCONS_00067192-exon-scaffold_466-1510915933:263507..263778 | Clytia hemisphaerica | exon |
| TCONS_00067192-exon-scaffold_466-1575043694:263507..263778 | TCONS_00067192-exon-scaffold_466-1575043694:263507..263778 | Clytia hemisphaerica | exon |
| TCONS_00067192-exon-scaffold_466-1491911889:263938..264637 | TCONS_00067192-exon-scaffold_466-1491911889:263938..264637 | Clytia hemisphaerica | exon |
| TCONS_00067192-exon-scaffold_466-1510915933:263938..264637 | TCONS_00067192-exon-scaffold_466-1510915933:263938..264637 | Clytia hemisphaerica | exon |
| TCONS_00067192-exon-scaffold_466-1575043694:263938..264637 | TCONS_00067192-exon-scaffold_466-1575043694:263938..264637 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_466 | supercontig | scaffold_466:261143..264637 + |
Blast
BLAST of TCONS_00067192 vs. Swiss-Prot (Human)
Match: CATL1 (Cathepsin L1 OS=Homo sapiens GN=CTSL PE=1 SV=2) HSP 1 Score: 357.836 bits (917), Expect = 4.409e-115 Identity = 180/333 (54.05%), Postives = 223/333 (66.97%), Query Frame = 3
Query: 1053 SIATAALCMTIEKAELIADEG----WQLWKSTHNAAYADFNEEKVRYTIWQDNVRRITQFNRNNKK----MSLGMNHFGDMTTTEFKSKMNGYLAGSKQQGSTFMTPNFAEIPDSVDWRKKDGYVSEVKNQGQCGSCWAFSTTGALEGQHFRKTGQKVDLSEQNLVDCSKDYGNYGCQGGLMDNAFKYIKANGGIDTEKSYPYEGKNLQCRFKKSSVGADDTGFVDIPKGNEDALKNASATVGPISVAIDASHFSFQFYKEGVYDEPQCSSTQLDHGVLVVGYG----SMNGQDYWIVKNSWGPGWGLKGYIMMSRNKNDQCGIASSASYPLV 2015
++ AA C+ I A L D W WK+ HN Y NEE R +W+ N++ I N+ ++ ++ MN FGDMT+ EF+ MNG+ ++G F P F E P SVDWR+K GYV+ VKNQGQCGSCWAFS TGALEGQ FRKTG+ + LSEQNLVDCS GN GC GGLMD AF+Y++ NGG+D+E+SYPYE C++ A+DTGFVDIPK E AL A ATVGPISVAIDA H SF FYKEG+Y EP CSS +DHGVLVVGYG + YW+VKNSWG WG+ GY+ M++++ + CGIAS+ASYP V
Sbjct: 4 TLILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYG-MNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREK-GYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 333
The following BLAST results are available for this feature:
|
