TCONS_00072079 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072079
Unique NameTCONS_00072079
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072079 ID=TCONS_00072079|Name=TCONS_00072079|organism=Clytia hemisphaerica|type=transcript|length=369bp
caCGACCCGAAAAACGTTGCTAAGACTTGAACATGATGAGAAATTGTAGA
GTTGAATACTGCTAACTCGAACGAAGAAAACTATANNNNaaaaaaaaaat
tagatataaCGTGTATAAAATATTGCCAGACTACGATctaataaatactt
tttttaaatattgcgAAATTTTTTGTGATCGGGTTCTACCCTGATCGCTT
TTGGAATATCATTCAAAAGGCGACTTGCCTTGCCAACAAATAATTTTTCC
GATACATTAGTCTCATATTTAGATTCAACTTCCTCAACATTACGAGTATT
ACGTCCAGCGACTCTTAATTTAAAACCTTTTAAGTACGATGGAAACTCAT
CCTGGTGAATCGATTTGTG
Run BLAST on NCBI

transcript from alignment at scaffold_70:2548..2916

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072079 ID=TCONS_00072079|Name=TCONS_00072079|organism=Clytia hemisphaerica|type=transcript|length=369bp|location=Sequence derived from alignment at scaffold_70:2548..2916 (Clytia hemisphaerica)
CACAAATCGATTCACCAGGATGAGTTTCCATCGTACTTAAAAGGTTTTAA
ATTAAGAGTCGCTGGACGTAATACTCGTAATGTTGAGGAAGTTGAATCTA
AATATGAGACTAATGTATCGGAAAAATTATTTGTTGGCAAGGCAAGTCGC
CTTTTGAATGATATTCCAAAAGCGATCAGGGTAGAACCCGATCACAAAAA
ATTTcgcaatatttaaaaaaagtatttattagATCGTAGTCTGGCAATAT
TTTATACACGttatatctaattttttttttNNNNTATAGTTTTCTTCGTT
CGAGTTAGCAGTATTCAACTCTACAATTTCTCATCATGTTCAAGTCTTAG
CAACGTTTTTCGGGTCGtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044766XLOC_044766Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072079-exon-scaffold_70-1491911889:2548..2916TCONS_00072079-exon-scaffold_70-1491911889:2548..2916Clytia hemisphaericaexon
TCONS_00072079-exon-scaffold_70-1510915933:2548..2916TCONS_00072079-exon-scaffold_70-1510915933:2548..2916Clytia hemisphaericaexon
TCONS_00072079-exon-scaffold_70-1575043694:2548..2916TCONS_00072079-exon-scaffold_70-1575043694:2548..2916Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:2548..2916 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.87737	2.16227	2.07208	1.31815	5.75315	2.7443	6.46182	5.37946	1.24349	3.24216	1.411	1.97655	3.63229	2.1622	1.81886	1.94985	1.16519	2.18776	3.06423	2.82279	3.20523	7.25646	0	1.42781	2.38068	2.54964	5.71956	6.46347	4.52774	3.01718
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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