TCONS_00067675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067675
Unique NameTCONS_00067675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067675 ID=TCONS_00067675|Name=TCONS_00067675|organism=Clytia hemisphaerica|type=transcript|length=2594bp
CTTTGTCTTTATCATCAGTATGTGTTCTGGAAAATGTGGAAAGCAAGAGC
CAAAGGTTCAACTAATTTTGGTCAGAAGCCAAAGAACGTCAAATGAAGTT
GTCAACATCAAGTCTGGTTTGTTACCGTTATGATTGCTATTTGCATTCAC
AACATCTTGATCGACATGATTCCAACCGCCTTAATAACAATCCAAATGGT
TTAATTACCTACCAACAAACAGCCAATGGCATCATCAAGACTGGATGTGT
AAACCAGGAAAGATTTCTTTCTGTGTTTTATATTCCAACCTTTTAGTCTG
GGGAAATCATTTTGATGCTTGTTAAGTTTGCTCAGGCTTTTTCTATTTTG
CCTTCTTATAGCAAGCCTGCATTACCTCCTTGCCCTAGGAATGGGAATTG
TTGCTCCATAGCAAATTGATTCCTATCACCATGAAATACAATCATGCCTA
CAATTTAAATGTGTTAAATTTGATAATATTGGAAATCGATTTGTTATAAA
TGCCATAATTCGTGCTGAAAAGTGGACACAATTGGGACATACTGTACATT
TATTCAAGAAATCAATCAATTTCTTCTTTGCTGGTTAATTTCTTAGTAAA
ATGCCAATGGTAGGACATTTTAGAATATTCATATTAAAGTATTCTCGTCA
TGCTTCTATCTATTCTTGATTAGAAAACGATACAAATTTTATGATGCTGG
GTTATTAAAGTGTACAATCGAATATATTTGCCAAGTATCTCTAATAGAGC
TGCTTTATGTAGACAAGTCTCAAAGAGGTTATCAAAGTGGCCGATGTAAC
AAAGCTGTGAAAACCATTATTATGTATGCTCAACATCCTCCAGTTGCTTT
GTTGATCTTCAAAATTCTGATTGAAGACACCTTGgatctaaaaattttgg
atagGTTTGATATCTTCCCATCCAGTGTTTCATTAGGAGTTAGCAGAAGG
TTATAAATGATTATTGAAGCTCAAACAAAGAAATTCAATGCAGAACTGAG
CTTTTATCACACATTTGGCTGGTTACaataaaattgcaaattttataGAA
TGAAATAATGGATTGGTCAATGAGTTATGGAAGCAAATAACCAGTTATCA
ACCATTGTGATCAATGCATTCTCCATGAAATATTCACCAATGCAGTTcaa
gtttttatttgttttcaattatgTTTGAAATAAGATGGTTCTTATGTTTT
GGATTAAGATGGTTGATATATGGACAAGACTTATTCATGAAAAGTCGCCA
TTTTGGTACTAAggaattggaaaatttgaagTAACTTCAACAGGCACCAA
CATTCAGTGATATTTTTACCGCTggtcatcaaaaatttctcttccTCTAC
TTCTATCGACCACACCTTCCTCAGAGCCTGGTCTGTTTGTAATGTATCAA
AAAATTTAGTGGTGTCAAATGCGCTGATGATTTTAAATGCCTTAAGAAGG
ATATCCCTATCGCAATGTCTAAGAAGCATACCTTTCGTCAAGTGCTCTTC
GTGTTTTTGGGGTCGAAATCTTGCTAACAGACTTTTCAATAGGACAAACA
AGTTTAATCACCCAAAGTTGATCAGCACGATTGAGCAATTAAAAAGAAGA
GTGTAAGAAAGAAAAACTCCATTTGTGATCGTTGCACAGCAAAAGAAAGT
TACGtgagaaaaagtttctttaattttcaaatttgttttctaCTTTTGAt
cagattcttgttgtaaaatcgaaatttaacaTTGTGCGAGTAAAAGCTTG
TGACTGTCCGTTAAAACACATAAGAGTAGGCTGTATTCCATGTCTTGCTT
CTAGTCTGTTTCTTAGCCAGCAAAccgtcatcaaattttatgatcCAGAG
CCAAAAGCTATCAACCATTCGTTTGCAAAACATCCCTCATGAAAAAGAAC
GCGTAAAGATTCAAACCATTCAAAGAGAGAGGTGACCCATTTGACTTTAA
ACATTTAGGAGGACCTCCTAAAGCATTTTGTTGAATTAGCAAGGCACAGA
TAATCAATACCTGAAAAGAAACCAATCACTATTTCTATCGCTGCCAGTAT
GTTGACGAAATCAGTCCTAGAATAGTTAGAAAAGCTGAACAAAATCCTTG
AACAAAGTCGATCATTTGTGGCCTTTTGTGGTGTTTGCTTTCCATCCAGT
GTATCATTAGGATCAAAAAAAGGAGTTCAAAGTCAATGCAAAGCTGCTAT
GAAGAATGTAACTTGCAGAGCTTACAGTTTACCACTCATTTGGTTGTCTT
ACAATGAGATTTCAAGTTCCGTAGAATGCAATGAGAGAGGTCAAGACCGT
TCAAAAGCAAATTATCAGGTTTTACAATTATTTATTTCAACTTCTTGAGA
AATACCtttcaacaacttttttttttttctttttttttgacatcGAAAAT
TGGATCTTGAAGAATTTTGTTTACAAGAGAATATAGAAAGGGGTTTGGGG
TGGGCTAACTGTATGCCATGTTTTGTTCTGTACTAAATTTCAGTAGTCAT
TTGGCTTGATCAATGAATCCATCTGAAAAGTAACCGCTTTGGGACTTGGG
AATTACGACTTAAGGGTGAATCCAACCGACACCGTCACCTGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_472:414889..420161+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067675 ID=TCONS_00067675|Name=TCONS_00067675|organism=Clytia hemisphaerica|type=transcript|length=5273bp|location=Sequence derived from alignment at scaffold_472:414889..420161+ (Clytia hemisphaerica)
CTTTGTCTTTATCATCAGTATGTGTTCTGGAAAATGTGGAAAGCAAGAGC
CAAAGGGTAAGAATTATACAAAACCGAAATTTATGCTATCTTCTTTAATC
TTCAAACGAAGAGAAAACCGGCAAAAGAAAGGCATAAATCTTTTTCTTGA
TGCAGTACTCTCTAACTCAATTCATTCTGTTCAAAATGAAGCCAAACTTT
ATAAACAGAAAAGACGTCAGGTTATAACAGAGCGCTCTATTAaagagaaa
aactttgaaaacgaaAAAGCAAATGAAGAAGAAATCGAAAGGATTTGTGG
CATTGATAGTTTCTTTAATGAACTTCAGAGTGTGAGATTGGATAAAAAAA
ACTACAGTGGTGAAAATAATCTCTCAACAGAAACTTATATACATGACACT
GATTGTGAAATTAATAACATGGTTTCCAACTTCATCGAAAATGGTTCTCT
AGGCTGAAGTATAGGTGTAGCTTCATTAATCTTGTGAAGAGGGAGAATTG
TTCTCTCATTTTCACCATTAACATCATAAAACAGTAGTTTCAATCTTGCT
GCTTACATCTTTTCACTAAATTGTTGGTGTACTATCAATTTAACTGATAA
CAAGGACGTGGAGAAATTAAATCCTACCAGACATAGGAATATAGGAGAGA
ATTAAAAATTGGTGTCCAAGTGATCTCTGGTTTTtgcattttgtttgttt
tggacaGTTCAAAAAGTTATTCCAGACGAATCAAAAGTCTTCTCAATTTT
AGAATTGACAAGTTACAAGTTGAATGAATTCATATTTCTGGTGTTGGATC
ACCAGATTATTtgcttaatttttatttttgttactaTATTGCCACATACC
ATTGATTGGTACTGTTACTATGCTTGAGGTAACTTACATTATGTCTTCTA
CGGTACATCAAACTCATCTAGTCTGTAAGTTTTAGAATGAACAAGTAATG
TTGTTACCTTAatagggaactaattttgataAGATTTAGTTCTCAccaaa
ataaaagttgattttccaaaataactCCTTAGTTAGTCTACGACTGAATT
TGTACAATGGAGTGTTTATCTAACCTTCTCAGTACCATGGCTTTGTGGTC
CAGTGGTGTGTAAAACTAACCTTTTATTAAACTGCTCAATTTCAGGCAAA
ATCAAATTTACCCTGCCGTTTACTAATTTCAGCAGATTTTGCTGAATTAG
CATCATAAGTTTTatgattcaaaaaacattttgaccaatatttttcagca
taagcTTTTTGTTTAgttaaaaaacatcatcagtgcATATACAAGTAAAa
cgtacaaaaattttctgaaaagccCTTTTCTTCGTCTAAATCATTTTATC
GCAGAAATGAATGCCAAAATTATAACTTCCCCTCATCACATAATTATTAT
CaatacatttgatattttgaagGTTTTCGCTTTTCACAGAAATAAGCTTC
TTTTAAGGTATCCGCGTGATGTACTTCAAAAGTGACTTTTAAAATCAAGG
GCCAAGGAATGGTTTGATTTGAAGACTATGAAAGTGAACCTCAATTAATG
AAATAAGCATTATAAATAACACCAATCAAGGAAAGGTATCTTGTTGGCTT
TTTTAATAGGTCGGTCATTGTATTGTTTCTAGTATTTATGAATTGACTCA
AGATTCTTATTCAAActtaaatgttattttctcttgATTAGTTCAACTAA
TTTTGGTCAGAAGCCAAAGAACGTCAAATGAAGTTGTCAACATCAAGTCT
GGTTTGTTACCGTTATGATGtaataattattttaattttaatcatttttc
ggacgattttacaaaaactttttttcctaatcAATCTCTAAAGTTTACTT
GTTCATCTATTCTTAACCAATTCATTTCTTTTGAATGTTAGTGCTATTTG
CATTCACAACATCTTGATCGACATGATTCCAACCGCCTTAATAACAATCC
AAATGGTTTAATTACCTACCAACAAACAGGTTTGTATGAATATAATAATT
CTTTGTTCACTTAGGAACCTTAGCAtggtatacatgttttttttataagc
aagtgtctgcccctatatcagactcgcattatgcttagcattatattgtt
ctcaaacaatagagccattgtttaggtacctaAAACTGAGCCTGTATATG
CTTGTagacgttatgcttataaaagaaaaaaacatgtagcatTGCTGCAA
AGTGCATAATTGATCATTAAAGtcctaaataattttttatccCAACATCA
Gtttcttttcaaattgaattccaaaaaatgtcaaaagacaacttttaaca
tgttTACTGCCATTAAAGAAGCCCTAATGATGTAAACACAATCTCACAGT
AGAGAGAAAATCGTCCACAAAATTAAGTAGTCTCGTTAAATCTTGGATGA
GCTCAATTGCAAAATTTAACCCCGCAAAAATTTATCACTAAAGAGTACTA
CATACCCAaatcaataaatattttaataagaGGTTTATGTTTCTTACAAA
AGGGTTTAGAAAAATGCTATTTACACCAAAACAATGCTATTTATGTTAGA
TTTTAGGATATTTTTTGTGCTAattaaaattgaataactttatGAAGTGA
TTCATTAAATGAGTTATTAATATTTGAATAGTGTCAAGAAAGATTATTAA
GTTTTATGTAAAGAttatttataaatttcatttttttccatttacaGCCA
ATGGCATCATCAAGACTGGATGTGTAAACCAGGAAAGATTTCTTTCTGTG
TTTTATATTCCAACCTTTTAGTCTGGGGAAATCATTTTGATGCTTGTTAA
GTTTGCTCAGGCTTTTTCTATTTTGCCTTCTTATAGCAAGCCTGCATTAC
CTCCTTGCCCTAGGAATGGGAATTGTTGCTCCATAGCAAATTGATTCCTA
TCACCATGAAATACAATCATGCCTACAATTTAAATGTGTTAAATTTGATA
ATATTGGAAATCGATTTGTTATAAATGCCATAATTCGTGCTGAAAAGTGG
ACACAATTGGGACATACTGTACATTTATTCAAGAAATCAATCAATTTCTT
CTTTGCTGGTTAATTTCTTAGTAAAATGCCAATGGTAGGACATTTTAGAA
TATTCATATTAAAGTATTCTCGTCATGCTTCTATCTATTCTTGATTAGAA
AACGATACAAATTTTATGATGCTGGGTTATTAAAGTGTACAATCGAATAT
ATTTGCCAAGTATCTCTAATAGAGCTGCTTTATGTAGACAAGTCTCAAAG
AGGTTATCAAAGTGGCCGATGTAACAAAGCTGTGAAAACCATTATTATGT
ATGCTCAACATCCTCCAGTTGCTTTGTTGATCTTCAAAATTCTGATTGAA
GACACCTTGgatctaaaaattttggatagGTTTGATATCTTCCCATCCAG
TGTTTCATTAGGAGTTAGCAGAAGGTTATAAATGATTATTGAAGCTCAAA
CAAAGAAATTCAATGCAGAACTGAGCTTTTATCACACATTTGGCTGGTTA
CaataaaattgcaaattttataGAATGAAATAATGGATTGGTCAATGAGT
TATGGAAGCAAATAACCAGGTTTTCTACTAAATTGATATTTCTTAacgtt
ttttaaataatgtGTTGTGCTCAAATTCGAAAGATTTTAGTTTCTTTTTA
GGAAGAAAATGATATTGAATAAACCAGTCTTGAAATTTTTCTACTGTTAG
TATCTTGACTCTTATTTCATTATACTGTCAAAAGGGATTGAATCCATGCC
AATTTTTGTGTCCTTAATTTCAGTTATCAACCATTGTGATCAATGCATTC
TCCATGAAATATTCACCAATGCAGTTcaagtttttatttgttttcaatta
tgTTTGAAATAAGATGGTTCTTATGTTTTGGATTAAGATGGTTGATATAT
GGACAAGACTTATTCATGAAAAGTCGCCATTTTGGTACTAAggaattgga
aaatttgaagTAACTTCAACAGGCACCAACATTCAGTGATATTTTTACCG
CTggtcatcaaaaatttctcttccTCTACTTCTATCGACCACACCTTCCT
CAGAGCCTGGTCTGTTTGTAATGTATCAAAAAATTTAGTGGTGTCAAATG
CGCTGATGATTTTAAATGCCTTAAGAAGGATATCCCTATCGCAATGTCTA
AGAAGCATACCTTTCGTCAAGTGCTCTTCGTGTTTTTGGGGTCGAAATCT
TGCTAACAGACTTTTCAATAGGACAAACAAGTTTAATCACCCAAAGTTGA
TCAGCACGATTGAGCAATTAAAAAGAAGAGTGTAAGAAAGAAAAACTCCA
TTTGTGATCGTTGCACAGCAAAAGAAAGTTACGtgagaaaaagtttcttt
aattttcaaatttgttttctaCTTTTGAtcagattcttgttgtaaaatcg
aaatttaacaTTGTGCGAGTAAAAGCTTGTGACTGTCCGTTAAAACACAT
AAGAGTAGGCTGTATTCCATGTCTTGCTTCTAGTCTGTTTCTTAGCCAGC
AAAccgtcatcaaattttatgatcCAGAGCCAAAAGCTATCAACCATTCG
TTTGCAAAACATCCCTCATGAAAAAGAACGCGTAAAGATTCAAACCATTC
AAAGAGAGAGGTGACCCATTTGACTTTAAACATTTAGGAGGACCTCCTAA
AGCATTTTGTTGAATTAGCAAGGCACAGATAATCAATACCTGAAAAGAAA
CCAATCACTATTTCTATCGCTGCCAGTATGTTGACGAAATCAGTCCTAGA
ATAGTTAGAAAAGCTGAACAAAATCCTTGAACAAAGTCGATCATTTGTGG
CCTTTTGTGGTGTTTGCTTTCCATCCAGTGTATCATTAGGATCAAAAAAA
GGAGTTCAAAGTCAATGCAAAGCTGCTATGAAGAATGTAACTTGCAGAGC
TTACAGTTTACCACTCATTTGGTTGTCTTACAATGAGATTTCAAGTTCCG
TAGAATGCAATGAGAGAGGTCAAGACCGTTCAAAAGCAAATTATCAGGTT
TTACAATTATTTATTTCAACTTCTTGAGAAATACCtttcaacaacttttt
tttttttctttttttttgacatcGAAAATTGGATCTTGAAGAATTTTGTT
TACAAGAGAATATAGAAAGGGGTTTGGGGTGGGCTAACTGTATGCCATGT
TTTGTTCTGTACTAAATTTCAGTAGTCATTTGGCTTGATCAATGAATCCA
TCTGAAAAGTAACCGCTTTGGGACTTGGGAATTACGACTTAAGGGTGAAT
CCAACCGACACCGTCACCTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042253XLOC_042253Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067675-exon-scaffold_472-1491911889:414889..414944TCONS_00067675-exon-scaffold_472-1491911889:414889..414944Clytia hemisphaericaexon
TCONS_00067675-exon-scaffold_472-1510915933:414889..414944TCONS_00067675-exon-scaffold_472-1510915933:414889..414944Clytia hemisphaericaexon
TCONS_00067675-exon-scaffold_472-1575043694:414889..414944TCONS_00067675-exon-scaffold_472-1575043694:414889..414944Clytia hemisphaericaexon
TCONS_00067675-exon-scaffold_472-1491911889:416580..416657TCONS_00067675-exon-scaffold_472-1491911889:416580..416657Clytia hemisphaericaexon
TCONS_00067675-exon-scaffold_472-1510915933:416580..416657TCONS_00067675-exon-scaffold_472-1510915933:416580..416657Clytia hemisphaericaexon
TCONS_00067675-exon-scaffold_472-1575043694:416580..416657TCONS_00067675-exon-scaffold_472-1575043694:416580..416657Clytia hemisphaericaexon
TCONS_00067675-exon-scaffold_472-1491911889:416780..416867TCONS_00067675-exon-scaffold_472-1491911889:416780..416867Clytia hemisphaericaexon
TCONS_00067675-exon-scaffold_472-1510915933:416780..416867TCONS_00067675-exon-scaffold_472-1510915933:416780..416867Clytia hemisphaericaexon
TCONS_00067675-exon-scaffold_472-1575043694:416780..416867TCONS_00067675-exon-scaffold_472-1575043694:416780..416867Clytia hemisphaericaexon
TCONS_00067675-exon-scaffold_472-1491911889:417586..418457TCONS_00067675-exon-scaffold_472-1491911889:417586..418457Clytia hemisphaericaexon
TCONS_00067675-exon-scaffold_472-1510915933:417586..418457TCONS_00067675-exon-scaffold_472-1510915933:417586..418457Clytia hemisphaericaexon
TCONS_00067675-exon-scaffold_472-1575043694:417586..418457TCONS_00067675-exon-scaffold_472-1575043694:417586..418457Clytia hemisphaericaexon
TCONS_00067675-exon-scaffold_472-1491911889:418662..420161TCONS_00067675-exon-scaffold_472-1491911889:418662..420161Clytia hemisphaericaexon
TCONS_00067675-exon-scaffold_472-1510915933:418662..420161TCONS_00067675-exon-scaffold_472-1510915933:418662..420161Clytia hemisphaericaexon
TCONS_00067675-exon-scaffold_472-1575043694:418662..420161TCONS_00067675-exon-scaffold_472-1575043694:418662..420161Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:414889..420161 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0775695	0.518151	0.114253	1.12927	0.439589	1.96787	0.0130892	0.0660294	1.22159	2.56031	3.0844	0.7785	1.59867	1.97795	0.972954	0.687043	0.300923	0.322625	0.84799	0.950398	1.74259	0.711927	0.162496	0.140634	0.291304	0.155308	2.21806	0.571204	0.152508	0.670685
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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