TCONS_00067830 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067830
Unique NameTCONS_00067830
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067830 ID=TCONS_00067830|Name=TCONS_00067830|organism=Clytia hemisphaerica|type=transcript|length=620bp
CAATAAGCTTTaaagcgaaaaaatcaaatgtttctTTCAGTTGCTTATAT
AAATTTTCATGTCaaggaaaaaataatgtatTAAACGAAATAATGTCAGA
GATAGACGAAGACACACCGCAAGAGGTAACTCCTGATGATGCTCCTGCTG
CTATTGATCCACCAATCAATGAAGAGCAGCAACCTGATGAAGGTGTGGAT
CAGAAGGATGAATCTGCACCACATGATGAgtcaaatgagaaACAGCAAGA
AGATGGTCAACAGCAAGAAGATGGTCAACAGCAAGAAGaacaacaggtTG
AATTGAAAGAAGCTGTGTCTGAGGGAAATGTTGAACAACAAGGAGGAGAT
CCATCGatAACTGAGCCACTTGTTGAGAAGAGAGAAGAGGAGCAACAAGA
AAGTCAGGGAGAAACTTCTCATGATATTGAAATTCTCGAAACGCCAACGA
CACCGCCCCCACCACCCAAACATTTAGAGAATGATATCATTCTTGAAGTT
GACGAAGAAGAACAAAGTCATAGCTTAGATAGTGGTGATAATTTGGATGA
AGAATTGGAGGATGAAGAGACTGGCAGTCTAGTCTTTGATCGTGAACAGT
TGCTACAACAATACAAGGTT
Run BLAST on NCBI

protein sequence of TCONS_00067830-protein

>TCONS_00067830-protein ID=TCONS_00067830-protein|Name=TCONS_00067830-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
ISFKAKKSNVSFSCLYKFSCQGKNNVLNEIMSEIDEDTPQEVTPDDAPAA
IDPPINEEQQPDEGVDQKDESAPHDESNEKQQEDGQQQEDGQQQEEQQVE
LKEAVSEGNVEQQGGDPSITEPLVEKREEEQQESQGETSHDIEILETPTT
PPPPPKHLENDIILEVDEEEQSHSLDSGDNLDEELEDEETGSLVFDREQL
LQQYKV
Run BLAST on NCBI

transcript from alignment at scaffold_476:115706..117624-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067830 ID=TCONS_00067830|Name=TCONS_00067830|organism=Clytia hemisphaerica|type=transcript|length=1919bp|location=Sequence derived from alignment at scaffold_476:115706..117624- (Clytia hemisphaerica)
CAATAAGCTTTAAAGCGAAAAAATCAAATGTTTCTTTCAGTTGCTTATAT
AAATTTTCATGTCAAGGAAAAAATAATGTATTAAACGAAATAATGTCAGA
GATAGACGAAGACACACCGCAAGAGGTAACTCCTGATGATGCTCCTGCTG
CTATTGATCCACCAATCAATGAAGAGCAGCAACCTGATGAAGGTGTGGAT
CAGAAGGATGAATCTGCACCACATGATGAGTCAAATGGTAAAAAAGATTT
TTCATATGTTTTAATATTTTCTGCACCAACACATATAAGAACATCTTTAA
AATTTTTGAAGCTTCAATGTTCTTAACTTCTTGAGTTTTAGGCCTAAAAA
ATGTGTTCTTAACATATTCTTATTTCACTGTTTTTTGAGTATTATTTTGA
TCCGATTTTCTATGAAATTGGGTGTTTTAGAATCCACAAAGCCTTAAAAT
GTTTTTATCTTGTTTTTATTAAATTTTGGCCAACAAAATTTTAGAATTAT
CTGAAGGCTTTAAAGATTTTGGATGTTCTTTCTTTTATAAGAGAAACAGC
AAGAAGATGGTCAACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCAA
CAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAGCAAGAAGATGG
TCAACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAGCAAGAAG
ATGGTCAACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAGCAA
GAAGATGGTCAACAGCAACAACAACAACAGGTTGAATTGAAAGAAGCTGT
GTCTGAGGGAAATGTTGAACAACAAGGAGGAGATCCATCGGTTTGTAATA
ATTTGATACATGTTTTTTTATATAAGAAAAAACCAATTAAGAACATTGAG
GCTTTGATGACCAAGAACATCTTAAGACTTTATGGACCCAGATCCCATTT
TTTTAGGGAATCGCTCAAATAAAAACATTGTAGTACTGTATTATTAAGAA
TTAAATCAAATAAAAGAATTAGCTGCTTAATTTGACCTGAACGGAATCGT
TTTTTCAAGTTTTCACCATTGTTTTCTGTTTTCTTTGTTTAGATAACTGA
GCCACTTGTTGAGAAGAGAGAAGAGGAGCAACAAGAAAGTCAGGGAGAAA
CTTCTCATGATATTGAAATTCTCGAAACGCCAACGACACCGCCCCCACCA
CCCAAACATTTAGAGAATGATATCATTCTTGAAGTTGACGAAGGTATTGT
AATTATAATACTGAAGAAATATTAATTTAATCTGAGTAATTATTATTATC
ATCTATGTTTGCTATTTATTTGCAAACAATTTATAAAACACAGCTTAAAG
CTGCCCGAGTAATCTCCGAGCAGATTCTGATACTCCGTGCATGACACATA
TTCACTTTTAAGTCCATGGTTCCGCGAGAGAATCTGTCCAGGTTAGCGCA
CCGTTGTGTTTTTTTATTCCAGATTTGGGAAGAATATTAAATGAGCTTTT
GAGGGCGCTGATTGGTTAAGGCAAAACAATAGCACCAAAATCAAAAGCCA
ATCACAAACATAAAGATTTGAACCCTTTCACTTTTACATTCGTTTTCAAA
CAAAAAGCAGCGCTCTTTTAAATGTTTTTGCTGAACAACAAGGTCAAATC
ATCACATTCGCCATATCCCTTTAGAGCATAGCGTGGTATGTGCAGAATGG
ATGATCTGTTATGAGACTAGAGCCCAAGAGAAAACACTGTTTGTTCCACT
TTTTGAACATTTGATTGACATTTAACTGATCCTACAATCTTTCGTTTCCT
TTTCAGAAGAACAAAGTCATAGCTTAGATAGTGGTGATAATTTGGATGAA
GAATTGGAGGATGAAGAGACTGGCAGTCTAGTCTTTGATCGTGAACAGTT
GCTACAACAATACAAGGTT

Coding sequence (CDS) from alignment at scaffold_476:115706..117624-

>TCONS_00067830 ID=TCONS_00067830|Name=TCONS_00067830|organism=Clytia hemisphaerica|type=CDS|length=3090bp|location=Sequence derived from alignment at scaffold_476:115706..117624- (Clytia hemisphaerica)
AAGAACAAAGTCATAGCTTAGATAGTGGTGATAATTTGGATGAAGAATTG
GAGGATGAAGAGACTGGCAGTCTAGTCTTTGATCGTGAACAGTTGCTACA
ACAATACAAGGTTATAACTGAGCCACTTGTTGAGAAGAGAGAAGAGGAGC
AACAAGAAAGTCAGGGAGAAACTTCTCATGATATTGAAATTCTCGAAACG
CCAACGACACCGCCCCCACCACCCAAACATTTAGAGAATGATATCATTCT
TGAAGTTGACGAAGAACAACAGGTTGAATTGAAAGAAGCTGTGTCTGAGG
GAAATGTTGAACAACAAGGAGGAGATCCATCGAGAAACAGCAAGAAGATG
GTCAACAGCAAGAAGATGGTCAACAGCAAGAAGATAAGCTTTAAAGCGAA
AAAATCAAATGTTTCTTTCAGTTGCTTATATAAATTTTCATGTCAAGGAA
AAAATAATGTATTAAACGAAATAATGTCAGAGATAGACGAAGACACACCG
CAAGAGGTAACTCCTGATGATGCTCCTGCTGCTATTGATCCACCAATCAA
TGAAGAGCAGCAACCTGATGAAGGTGTGGATCAGAAGGATGAATCTGCAC
CACATGATGAGTCAAATGAAGAACAAAGTCATAGCTTAGATAGTGGTGAT
AATTTGGATGAAGAATTGGAGGATGAAGAGACTGGCAGTCTAGTCTTTGA
TCGTGAACAGTTGCTACAACAATACAAGGTTATAACTGAGCCACTTGTTG
AGAAGAGAGAAGAGGAGCAACAAGAAAGTCAGGGAGAAACTTCTCATGAT
ATTGAAATTCTCGAAACGCCAACGACACCGCCCCCACCACCCAAACATTT
AGAGAATGATATCATTCTTGAAGTTGACGAAGAACAACAGGTTGAATTGA
AAGAAGCTGTGTCTGAGGGAAATGTTGAACAACAAGGAGGAGATCCATCG
AGAAACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAGCAAGAA
GATAAGCTTTAAAGCGAAAAAATCAAATGTTTCTTTCAGTTGCTTATATA
AATTTTCATGTCAAGGAAAAAATAATGTATTAAACGAAATAATGTCAGAG
ATAGACGAAGACACACCGCAAGAGGTAACTCCTGATGATGCTCCTGCTGC
TATTGATCCACCAATCAATGAAGAGCAGCAACCTGATGAAGGTGTGGATC
AGAAGGATGAATCTGCACCACATGATGAGTCAAATGAAGAACAAAGTCAT
AGCTTAGATAGTGGTGATAATTTGGATGAAGAATTGGAGGATGAAGAGAC
TGGCAGTCTAGTCTTTGATCGTGAACAGTTGCTACAACAATACAAGGTTA
TAACTGAGCCACTTGTTGAGAAGAGAGAAGAGGAGCAACAAGAAAGTCAG
GGAGAAACTTCTCATGATATTGAAATTCTCGAAACGCCAACGACACCGCC
CCCACCACCCAAACATTTAGAGAATGATATCATTCTTGAAGTTGACGAAG
AACAACAGGTTGAATTGAAAGAAGCTGTGTCTGAGGGAAATGTTGAACAA
CAAGGAGGAGATCCATCGAGAAACAGCAAGAAGATGGTCAACAGCAAGAA
GATGGTCAACAGCAAGAAGATAAGCTTTAAAGCGAAAAAATCAAATGTTT
CTTTCAGTTGCTTATATAAATTTTCATGTCAAGGAAAAAATAATGTATTA
AACGAAATAATGTCAGAGATAGACGAAGACACACCGCAAGAGGTAACTCC
TGATGATGCTCCTGCTGCTATTGATCCACCAATCAATGAAGAGCAGCAAC
CTGATGAAGGTGTGGATCAGAAGGATGAATCTGCACCACATGATGAGTCA
AATGAAGAACAAAGTCATAGCTTAGATAGTGGTGATAATTTGGATGAAGA
ATTGGAGGATGAAGAGACTGGCAGTCTAGTCTTTGATCGTGAACAGTTGC
TACAACAATACAAGGTTATAACTGAGCCACTTGTTGAGAAGAGAGAAGAG
GAGCAACAAGAAAGTCAGGGAGAAACTTCTCATGATATTGAAATTCTCGA
AACGCCAACGACACCGCCCCCACCACCCAAACATTTAGAGAATGATATCA
TTCTTGAAGTTGACGAAGAACAACAGGTTGAATTGAAAGAAGCTGTGTCT
GAGGGAAATGTTGAACAACAAGGAGGAGATCCATCGAGAAACAGCAAGAA
GATGGTCAACAGCAAGAAGATGGTCAACAGCAAGAAGATAAGCTTTAAAG
CGAAAAAATCAAATGTTTCTTTCAGTTGCTTATATAAATTTTCATGTCAA
GGAAAAAATAATGTATTAAACGAAATAATGTCAGAGATAGACGAAGACAC
ACCGCAAGAGGTAACTCCTGATGATGCTCCTGCTGCTATTGATCCACCAA
TCAATGAAGAGCAGCAACCTGATGAAGGTGTGGATCAGAAGGATGAATCT
GCACCACATGATGAGTCAAATGAAGAACAAAGTCATAGCTTAGATAGTGG
TGATAATTTGGATGAAGAATTGGAGGATGAAGAGACTGGCAGTCTAGTCT
TTGATCGTGAACAGTTGCTACAACAATACAAGGTTATAACTGAGCCACTT
GTTGAGAAGAGAGAAGAGGAGCAACAAGAAAGTCAGGGAGAAACTTCTCA
TGATATTGAAATTCTCGAAACGCCAACGACACCGCCCCCACCACCCAAAC
ATTTAGAGAATGATATCATTCTTGAAGTTGACGAAGAACAACAGGTTGAA
TTGAAAGAAGCTGTGTCTGAGGGAAATGTTGAACAACAAGGAGGAGATCC
ATCGAGAAACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAGCA
AGAAGATAAGCTTTAAAGCGAAAAAATCAAATGTTTCTTTCAGTTGCTTA
TATAAATTTTCATGTCAAGGAAAAAATAATGTATTAAACGAAATAATGTC
AGAGATAGACGAAGACACACCGCAAGAGGTAACTCCTGATGATGCTCCTG
CTGCTATTGATCCACCAATCAATGAAGAGCAGCAACCTGATGAAGGTGTG
GATCAGAAGGATGAATCTGCACCACATGATGAGTCAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042359XLOC_042359Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067830-proteinTCONS_00067830-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067830-exon-scaffold_476-1575043694:117388..117624TCONS_00067830-exon-scaffold_476-1575043694:117388..117624Clytia hemisphaericaexon
TCONS_00067830-exon-scaffold_476-1575043694:117033..117083TCONS_00067830-exon-scaffold_476-1575043694:117033..117083Clytia hemisphaericaexon
TCONS_00067830-exon-scaffold_476-1575043694:116785..116852TCONS_00067830-exon-scaffold_476-1575043694:116785..116852Clytia hemisphaericaexon
TCONS_00067830-exon-scaffold_476-1575043694:116382..116532TCONS_00067830-exon-scaffold_476-1575043694:116382..116532Clytia hemisphaericaexon
TCONS_00067830-exon-scaffold_476-1575043694:115706..115818TCONS_00067830-exon-scaffold_476-1575043694:115706..115818Clytia hemisphaericaexon
TCONS_00067830-exon-scaffold_476-1510915933:117388..117624TCONS_00067830-exon-scaffold_476-1510915933:117388..117624Clytia hemisphaericaexon
TCONS_00067830-exon-scaffold_476-1510915933:117033..117083TCONS_00067830-exon-scaffold_476-1510915933:117033..117083Clytia hemisphaericaexon
TCONS_00067830-exon-scaffold_476-1510915933:116785..116852TCONS_00067830-exon-scaffold_476-1510915933:116785..116852Clytia hemisphaericaexon
TCONS_00067830-exon-scaffold_476-1510915933:116382..116532TCONS_00067830-exon-scaffold_476-1510915933:116382..116532Clytia hemisphaericaexon
TCONS_00067830-exon-scaffold_476-1510915933:115706..115818TCONS_00067830-exon-scaffold_476-1510915933:115706..115818Clytia hemisphaericaexon
TCONS_00067830-exon-scaffold_476-1491911889:117388..117624TCONS_00067830-exon-scaffold_476-1491911889:117388..117624Clytia hemisphaericaexon
TCONS_00067830-exon-scaffold_476-1491911889:117033..117083TCONS_00067830-exon-scaffold_476-1491911889:117033..117083Clytia hemisphaericaexon
TCONS_00067830-exon-scaffold_476-1491911889:116785..116852TCONS_00067830-exon-scaffold_476-1491911889:116785..116852Clytia hemisphaericaexon
TCONS_00067830-exon-scaffold_476-1491911889:116382..116532TCONS_00067830-exon-scaffold_476-1491911889:116382..116532Clytia hemisphaericaexon
TCONS_00067830-exon-scaffold_476-1491911889:115706..115818TCONS_00067830-exon-scaffold_476-1491911889:115706..115818Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:115706..117624 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.9084	12.9704	6.95477	5.72805	69.9863	53.2601	30.8363	39.5874	18.6876	22.3886	21.6163	20.8487	0	0	2.74392	0	0	3.41226	5.21885	4.91318	4.28773	4.65466	0	8.13758	110.733	69.2323	0	0	0	3.73703
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067830 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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