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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067940 ID=TCONS_00067940|Name=TCONS_00067940|organism=Clytia hemisphaerica|type=transcript|length=912bp
CCAAGCCAACAGATATGGATGGAGCTGTTGACGGTATATTATTGTACTAG
TGCTCTCTGTTTTATATACAAGTTATAAATGTTtagaaaatgatcaaaat
aaagTATCAAATCCATACCTTTGGGTTCTGTGATAAGATCCATTTCTGTT
AGGGCTGTAAGTAAGTAGGCTGTAAGGTAAGCTGATGCGAGCAGAGAACA
ACAGCCAACAAAATTCCAAAGCGTGAGAAATTGCACAGCTCGGGGTACCA
TCTTGATAATATCAAATTTTGTCAGTGAAGCGAGCGGAAGCGAACGACGC
TAAACAAATGATAATCGTCGATTTAAGAGAATTGCGAAAACGATGATAAT
CATTCTTTTAACGGGCGATAAAGGGTTGataagtgagcaaaacaaactaa
tttctcaacgcaagttcaagtaagaaacaatggaaagaaaggAAAGGCTT
CTAGACCggagttttttatacggactatgatgtgacgaaaaatctgaact
cgaaaaatatatcccatattgtactctgtactgtgcgataactattacat
accTTGATAGATTGGTATACAGAGAAGAAATTAACATCTTTAATTTGTGT
TAATTTCTTCTCTTCTTGTAATATTTGCATTTTCGAaagataatttgaaa
ttttctcttgATGTGTTTTGATTTCTTGTTGTTTTGCTTTTAAAGAAGTT
TCCAGTGCTGTTGCTTCTTGTTGTGAAGCTTGTAAATCTTTCTGGGCATT
GGTAAGGGTTGCAAGAACAGAATTGTATTCGTTTTGATGGTGGCTTCTTA
TACTTTCCTTACTTTTCACGTGTTCGTTCATTCCAATAACTTGATAATAA
CATTCTAATTCCTGCAACGGCAgcttaagaaagaaaaaaaatactgtGAT
AAGTTTTTAATA Run BLAST on NCBI protein sequence of TCONS_00067940-protein >TCONS_00067940-protein ID=TCONS_00067940-protein|Name=TCONS_00067940-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MNEHVKSKESIRSHHQNEYNSVLATLTNAQKDLQASQQEATALETSLKAK
QQEIKTHQEKISNYLSKMQILQEEKKLTQIKDVNFFSVYQSIKVCNSYRT
VQSTIWDIFFEFRFFVTS Run BLAST on NCBI transcript from alignment at scaffold_477:19258..20169 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067940 ID=TCONS_00067940|Name=TCONS_00067940|organism=Clytia hemisphaerica|type=transcript|length=912bp|location=Sequence derived from alignment at scaffold_477:19258..20169 (Clytia hemisphaerica)
TATTAAAAACTTATCacagtattttttttctttcttaagcTGCCGTTGCA
GGAATTAGAATGTTATTATCAAGTTATTGGAATGAACGAACACGTGAAAA
GTAAGGAAAGTATAAGAAGCCACCATCAAAACGAATACAATTCTGTTCTT
GCAACCCTTACCAATGCCCAGAAAGATTTACAAGCTTCACAACAAGAAGC
AACAGCACTGGAAACTTCTTTAAAAGCAAAACAACAAGAAATCAAAACAC
ATcaagagaaaatttcaaattatcttTCGAAAATGCAAATATTACAAGAA
GAGAAGAAATTAACACAAATTAAAGATGTTAATTTCTTCTCTGTATACCA
ATCTATCAAggtatgtaatagttatcgcacagtacagagtacaatatggg
atatatttttcgagttcagatttttcgtcacatcatagtccgtataaaaa
actccGGTCTAGAAGCCTTTcctttctttccattgtttcttacttgaact
tgcgttgagaaattagtttgttttgctcacttatCAACCCTTTATCGCCC
GTTAAAAGAATGATTATCATCGTTTTCGCAATTCTCTTAAATCGACGATT
ATCATTTGTTTAGCGTCGTTCGCTTCCGCTCGCTTCACTGACAAAATTTG
ATATTATCAAGATGGTACCCCGAGCTGTGCAATTTCTCACGCTTTGGAAT
TTTGTTGGCTGTTGTTCTCTGCTCGCATCAGCTTACCTTACAGCCTACTT
ACTTACAGCCCTAACAGAAATGGATCTTATCACAGAACCCAAAGGTATGG
ATTTGATActttattttgatcattttctaAACATTTATAACTTGTATATA
AAACAGAGAGCACTAGTACAATAATATACCGTCAACAGCTCCATCCATAT
CTGTTGGCTTGG Coding sequence (CDS) from alignment at scaffold_477:19258..20169 >TCONS_00067940 ID=TCONS_00067940|Name=TCONS_00067940|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_477:19258..20169 (Clytia hemisphaerica)
ATGAACGAACACGTGAAAAGTAAGGAAAGTATAAGAAGCCACCATCAAAA
CGAATACAATTCTGTTCTTGCAACCCTTACCAATGCCCAGAAAGATTTAC
AAGCTTCACAACAAGAAGCAACAGCACTGGAAACTTCTTTAAAAGCAAAA
CAACAAGAAATCAAAACACATcaagagaaaatttcaaattatcttTCGAA
AATGCAAATATTACAAGAAGAGAAGAAATTAACACAAATTAAAGATGTTA
ATTTCTTCTCTGTATACCAATCTATCAAggtatgtaatagttatcgcaca
gtacagagtacaatatgggatatatttttcgagttcagatttttcgtcac
atcatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067940-exon-scaffold_477-1491911889:19258..20169 | TCONS_00067940-exon-scaffold_477-1491911889:19258..20169 | Clytia hemisphaerica | exon |
| TCONS_00067940-exon-scaffold_477-1510915933:19258..20169 | TCONS_00067940-exon-scaffold_477-1510915933:19258..20169 | Clytia hemisphaerica | exon |
| TCONS_00067940-exon-scaffold_477-1575043694:19258..20169 | TCONS_00067940-exon-scaffold_477-1575043694:19258..20169 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:19258..20169 . |
Blast
The following BLAST results are available for this feature:
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