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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067958 ID=TCONS_00067958|Name=TCONS_00067958|organism=Clytia hemisphaerica|type=transcript|length=832bp
CAAGCTCCTCATTCTCATcctcttcttctccttcttcaacAGATACTTCT
TCAAGCTTTTATTCTTCCTTCTCTAACCCACCTACCTCAGAAGCCATTGA
AAGCTCTTCATCTACAATTACCCCTTCACCAGTTTcgtctaattcgaact
tcttcCCAACTAGTTTCAGCCCTCTTGATTCCCCCAATGATCATTCCTCT
TCTGCCATAGGATCTTCAATCCCTACTGCAGCAGAAACATCCATTCCCTC
CCTTCCACCCTCTGCAACTCCGTCTCACGCTACCACAAACCTTTCTTCTA
ACCTTCCTACAGTAAGCTCCGACACTGCTGCTAATCCAAGCCTTGTCGGT
ACCATGGATTCTACCAACTCTTATCCCACTCCTTCTTCCATAATAGATCC
ATCCTTTCTAACTTTGTATACTCCAAGCAACTCTATTAATCCCGCGCCTA
TTAACTCAAGCCCTACCCCTCCTGAAAGTTTTGATCAAAATTATTCAAGT
GCTGTTTCACTTTCAACGAATAACTACCATTCATCTATTGAAACTATATC
ACCGAGTGAGAGCTCAATCATCGATAATATTCAAAATCCACACAATTCAT
CTGACTCAAGTCTGCACCCATCAACACAGACAATCAACTCAACATCCAAT
GAAAACCAGACTCTATTCACAAACCAAACTATCTCGGTGGATACTTCACA
AACTACAGAACCAGTCTACCAAACCACAGGAAATTTCAATTCAAACGAAA
CAGAATCTTTGAGTGCTACAGAATGGATCGCAGACTTAAATGCAACACAA
TCTATTGCTTATCCAAATACTACAGAATGGAT Run BLAST on NCBI protein sequence of TCONS_00067958-protein >TCONS_00067958-protein ID=TCONS_00067958-protein|Name=TCONS_00067958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
SSSFSSSSSPSSTDTSSSFYSSFSNPPTSEAIESSSSTITPSPVSSNSNF
FPTSFSPLDSPNDHSSSAIGSSIPTAAETSIPSLPPSATPSHATTNLSSN
LPTVSSDTAANPSLVGTMDSTNSYPTPSSIIDPSFLTLYTPSNSINPAPI
NSSPTPPESFDQNYSSAVSLSTNNYHSSIETISPSESSIIDNIQNPHNSS
DSSLHPSTQTINSTSNENQTLFTNQTISVDTSQTTEPVYQTTGNFNSNET
ESLSATEWIADLNATQSIAYPNTTEW Run BLAST on NCBI transcript from alignment at scaffold_477:420323..421154 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067958 ID=TCONS_00067958|Name=TCONS_00067958|organism=Clytia hemisphaerica|type=transcript|length=832bp|location=Sequence derived from alignment at scaffold_477:420323..421154 (Clytia hemisphaerica)
ATCCATTCTGTAGTATTTGGATAAGCAATAGATTGTGTTGCATTTAAGTC
TGCGATCCATTCTGTAGCACTCAAAGATTCTGTTTCGTTTGAATTGAAAT
TTCCTGTGGTTTGGTAGACTGGTTCTGTAGTTTGTGAAGTATCCACCGAG
ATAGTTTGGTTTGTGAATAGAGTCTGGTTTTCATTGGATGTTGAGTTGAT
TGTCTGTGTTGATGGGTGCAGACTTGAGTCAGATGAATTGTGTGGATTTT
GAATATTATCGATGATTGAGCTCTCACTCGGTGATATAGTTTCAATAGAT
GAATGGTAGTTATTCGTTGAAAGTGAAACAGCACTTGAATAATTTTGATC
AAAACTTTCAGGAGGGGTAGGGCTTGAGTTAATAGGCGCGGGATTAATAG
AGTTGCTTGGAGTATACAAAGTTAGAAAGGATGGATCTATTATGGAAGAA
GGAGTGGGATAAGAGTTGGTAGAATCCATGGTACCGACAAGGCTTGGATT
AGCAGCAGTGTCGGAGCTTACTGTAGGAAGGTTAGAAGAAAGGTTTGTGG
TAGCGTGAGACGGAGTTGCAGAGGGTGGAAGGGAGGGAATGGATGTTTCT
GCTGCAGTAGGGATTGAAGATCCTATGGCAGAAGAGGAATGATCATTGGG
GGAATCAAGAGGGCTGAAACTAGTTGGgaagaagttcgaattagacgAAA
CTGGTGAAGGGGTAATTGTAGATGAAGAGCTTTCAATGGCTTCTGAGGTA
GGTGGGTTAGAGAAGGAAGAATAAAAGCTTGAAGAAGTATCTgttgaaga
aggagaagaagaggATGAGAATGAGGAGCTTG Coding sequence (CDS) from alignment at scaffold_477:420323..421154 >TCONS_00067958 ID=TCONS_00067958|Name=TCONS_00067958|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_477:420323..421154 (Clytia hemisphaerica)
CCATTCTGTAGTATTTGGATAAGCAATAGATTGTGTTGCATTTAAGTCTG
CGATCCATTCTGTAGCACTCAAAGATTCTGTTTCGTTTGAATTGAAATTT
CCTGTGGTTTGGTAGACTGGTTCTGTAGTTTGTGAAGTATCCACCGAGAT
AGTTTGGTTTGTGAATAGAGTCTGGTTTTCATTGGATGTTGAGTTGATTG
TCTGTGTTGATGGGTGCAGACTTGAGTCAGATGAATTGTGTGGATTTTGA
ATATTATCGATGATTGAGCTCTCACTCGGTGATATAGTTTCAATAGATGA
ATGGTAGTTATTCGTTGAAAGTGAAACAGCACTTGAATAATTTTGATCAA
AACTTTCAGGAGGGGTAGGGCTTGAGTTAATAGGCGCGGGATTAATAGAG
TTGCTTGGAGTATACAAAGTTAGAAAGGATGGATCTATTATGGAAGAAGG
AGTGGGATAAGAGTTGGTAGAATCCATGGTACCGACAAGGCTTGGATTAG
CAGCAGTGTCGGAGCTTACTGTAGGAAGGTTAGAAGAAAGGTTTGTGGTA
GCGTGAGACGGAGTTGCAGAGGGTGGAAGGGAGGGAATGGATGTTTCTGC
TGCAGTAGGGATTGAAGATCCTATGGCAGAAGAGGAATGATCATTGGGGG
AATCAAGAGGGCTGAAACTAGTTGGgaagaagttcgaattagacgAAACT
GGTGAAGGGGTAATTGTAGATGAAGAGCTTTCAATGGCTTCTGAGGTAGG
TGGGTTAGAGAAGGAAGAATAAAAGCTTGAAGAAGTATCTgttgaagaag
gagaagaagaggATGAGAATGAGGAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067958-exon-scaffold_477-1491911889:420323..421154 | TCONS_00067958-exon-scaffold_477-1491911889:420323..421154 | Clytia hemisphaerica | exon |
| TCONS_00067958-exon-scaffold_477-1510915933:420323..421154 | TCONS_00067958-exon-scaffold_477-1510915933:420323..421154 | Clytia hemisphaerica | exon |
| TCONS_00067958-exon-scaffold_477-1575043694:420323..421154 | TCONS_00067958-exon-scaffold_477-1575043694:420323..421154 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:420323..421154 . |
Blast
The following BLAST results are available for this feature:
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