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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072585 ID=TCONS_00072585|Name=TCONS_00072585|organism=Clytia hemisphaerica|type=transcript|length=1139bp
CCAGAAAGATGCAAACTAGCTGGTGtctttttctaatatttttatctccT
CCACATATTCAGCTGATCCTTTTAACAGGAAGCTTGAGTGTTGCCAAGAT
GTAGAGTGTCTCTATGTTTTTTGGAGCTATGTTCCTTGGGGAGCAAACCA
TCTGAAGAAATGAATAACTTCGCTCTAGTGGGGAAGTGTTTGATGGTGTT
GCCAACAAAATCATGATGAGGGTACTGAAATGTGGAAACATTATTCCAGT
GTACCCTGATAATAACATATCACTGAGCACTTCCATCTGCTCAGTATGGC
TTTTGCCTTCTgtcatcttcttcatcatccaTCTTCTTGACAAgagtaga
aaaaaataatgtccCCAGATTTTTTCTCCCCCCCCCCTAGACTTTTTGGG
GCCATTTTTTCTCCCCccctagatttttgaaaaccattttgCCCCCGCCT
TTtcctattttctgaaaaaaatccccccttcccttttaaaaggggggggg
gacacTATGTATAAAGTGTGATTTTCAAGATTTAACGGAATAAACTATCG
GTTTCGGTGGATGTTTAGCGCCGTCACCGTCAATAATGTCCctctaatat
tttttttgaatcatAAGAAATAAGTAAGTATAAATAAGTAACTGCCACAA
aacgtttaattttttttgaaataattttcatatAATTGCGCTTTGTCTTT
TTGGGTTCACTTGACTTTGAGGAGCACTGTTGTTCAATATCATTGCTTGC
CATGACGATATCATTTAAACTACAAAACTACATTCACAAAACCAGGAATA
ATAACAATTCTTTCTGTGTTGGTATTTTAGAGGTTGTATACCAGATAGTA
GACGTACGCTGAATGTTAAATCATCCGGATTACTTTTTACCCGCATTATA
AATGTATaactaggggggggggatgTTAGGactaattttttaagcccatt
tgtcaaaagttgccattgggtataaaaagaagaaaaattcatgtaaaaac
cctgtggaacttttttcaaggttgccacGGGTAGGGTGCCACCGCCGCTC
TGCcagcaaaattgaaatttcaaaaatttttaaaacatagcgaagtgacc
cctcatttgaaaggtgttttcatgctgattaagaaaatc Run BLAST on NCBI transcript from alignment at scaffold_8:45298..46436 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072585 ID=TCONS_00072585|Name=TCONS_00072585|organism=Clytia hemisphaerica|type=transcript|length=1139bp|location=Sequence derived from alignment at scaffold_8:45298..46436 (Clytia hemisphaerica)
gattttcttaatcagcatgaaaacacctttcaaatgaggggtcacttcgc
tatgttttaaaaatttttgaaatttcaattttgctgGCAGAGCGGCGGTG
GCACCCTACCCgtggcaaccttgaaaaaagttccacagggtttttacatg
aatttttcttctttttatacccaatggcaacttttgacaaatgggcttaa
aaaattagtCCTAAcatcccccccccctagttATACATTTATAATGCGGG
TAAAAAGTAATCCGGATGATTTAACATTCAGCGTACGTCTACTATCTGGT
ATACAACCTCTAAAATACCAACACAGAAAGAATTGTTATTATTCCTGGTT
TTGTGAATGTAGTTTTGTAGTTTAAATGATATCGTCATGGCAAGCAATGA
TATTGAACAACAGTGCTCCTCAAAGTCAAGTGAACCCAAAAAGACAAAGC
GCAATTatatgaaaattatttcaaaaaaaattaaacgttTTGTGGCAGTT
ACTTATTTATACTTACTTATTTCTTatgattcaaaaaaaatattagagGG
ACATTATTGACGGTGACGGCGCTAAACATCCACCGAAACCGATAGTTTAT
TCCGTTAAATCTTGAAAATCACACTTTATACATAgtgtcccccccccctt
ttaaaagggaaggggggatttttttcagaaaataggaAAAGGCGGGGGca
aaatggttttcaaaaatctagggGGGGAGAAAAAATGGCCCCAAAAAGTC
TAGGGGGGGGGGAGAAAAAATCTGGggacattatttttttctactcTTGT
CAAGAAGAtggatgatgaagaagatgacAGAAGGCAAAAGCCATACTGAG
CAGATGGAAGTGCTCAGTGATATGTTATTATCAGGGTACACTGGAATAAT
GTTTCCACATTTCAGTACCCTCATCATGATTTTGTTGGCAACACCATCAA
ACACTTCCCCACTAGAGCGAAGTTATTCATTTCTTCAGATGGTTTGCTCC
CCAAGGAACATAGCTCCAAAAAACATAGAGACACTCTACATCTTGGCAAC
ACTCAAGCTTCCTGTTAAAAGGATCAGCTGAATATGTGGAggagataaaa
atattagaaaaagaCACCAGCTAGTTTGCATCTTTCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072585-exon-scaffold_8-1491911889:45298..46436 | TCONS_00072585-exon-scaffold_8-1491911889:45298..46436 | Clytia hemisphaerica | exon |
| TCONS_00072585-exon-scaffold_8-1510915933:45298..46436 | TCONS_00072585-exon-scaffold_8-1510915933:45298..46436 | Clytia hemisphaerica | exon |
| TCONS_00072585-exon-scaffold_8-1575043694:45298..46436 | TCONS_00072585-exon-scaffold_8-1575043694:45298..46436 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:45298..46436 . |
Blast
The following BLAST results are available for this feature:
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