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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068151 ID=TCONS_00068151|Name=TCONS_00068151|organism=Clytia hemisphaerica|type=transcript|length=2379bp
GTAGCCTGCAAGCATCGAGAAAAAAAGTAAGAGAAAAGTTAAGGAATTCA
TAAAGCAACCGGGAATTTACCAAATGACAAACCTCGACGAATTTGATTGG
ATAGAAAAGATTACGTGTCATAAGAAACGTTCATAATTGCACAACCATGA
AATGAGATATTGGTaatcaaaatattgatttcTCGCGGTTTTCATGTAGC
GACATGAATCAAGTGAGCGAGGGAAATGGTATAAGAGTGAAAGCAGAGAG
TAGATGTTTGGCTAAGAAGAGGTGGAGAAGGTGTGCTGTTGAAGGAAAGA
AAAGTGGTCAACACAAGACAAAGAGACGCAATGCAACCAGGTCCGATTTA
TTTTATGAGATCCACGCAAGCTGAGAACACACCTGTGTCAGTGGCCCTGT
AGAATTCCTCACACGGGGAAAAATGGCTGAAATACTATCTCCGGCGAGAA
TATACCAATACATAAGTTTATTTCCAATCACCTTATGGTATTAAGCTCCT
TCATTCTATTTCTCAttgggtcactgagacaggggtgtcagaCATGCTTG
TGCTCCGATTGTCTACTTTATTGATTTGTGAAAAGTACTAATTTGTGATC
AATAAAAGGGGCTCAGACCTTTGACAGACTTCAATCAAGAATAAACCATC
TCTTAAAAATCTGATCTGCGATGATAAAACTGATTGACATGGCTAACTTT
CATCAAATTTCTAGACACTTCTCATAATTTTACGTATAAACCAGATTTCT
CCGAAGATCTGAGCCCTTTTGACCTACctatgtttatttatttcttgttA
TAAATCTTACTCTTCCCTTTTTCAGCAAACAAACTCGACACCAATTGAAA
TCACAAACCGAACAAAATGTTGTAAAGCTGAATTCCTTCAAAGGGTTTAC
TTCAAGTTGATCTACTAAATCTGTACAATCTATGGTCAACACCATGAGGA
GATTGGCAGGCAATTTCATCCAGTAGATAATTGCAACTATTTTTTGGGCG
ATTCTGAAGATGCACTGAAAAATGAATTTCCAGTTGGGATATTTGCTGAG
CAAAATGAACGGAGTGATGAAGATATCAAGTATGTTCAAGGAATAAAGCA
AAGACTGATCGCCGATTGTGACGAGATCTTTGAAAGagaaaattcaacaa
atttgCAAGCGCTGAGCTACGATTCAAGTAATCAGGAATTTATTGGCTTC
ACTGAACTTGTAAATTCAGGCGACAAATGGTTATGTAGTGATCAAGACTC
TTCAACTTTTAGCTCGTCAACTTTTGAAGATATTCTCGATGAATGCTCGG
ATTTCTTTTGTTACGACGTACCTGTTGTAAGACAGACCTTCAGTAGCGAA
CAAGAAGGTACTCTCTCTAATAATCAACCCATGGATCCAGACTTGAACCT
AGTCATTGCATCGACCAGTACATCAATTGAAATACAAGATGTCAGTGGGA
TTTTGAATAGTATACATCCAAATCTTTTGTTTGACTTTGCTTCAAAATCG
AACAGTGCTTCTTCTGAAGACTTTAAGTGTTCAAAAGATGAAATGTTGAA
AACTAGAGACAAAAAGATCTTTAGAAGAAAGCAGAATAACAAAGCATCGA
GGGAATCTCGACTGcgcaaaaaagaagaatttcaaCGACTTTTAGAAGAg
caacatttgaaagaaaaacgaaaaaaggaCTTAGAGAATGAAGTCGCTCA
TCTACAAGGCGGAATCGAGGAGCTTTACGCATCGCAAGAAAGAACATTAG
AAACTGCAATTCAGGGAAATCCAAATGTTTCTCTACCTTTGTTTCTTGAA
CAATTATTGCAACTTATTCGTCAAAGTGCCATCGAGAAAAACTCGACGGG
TGAGGTTTACTCTAAGACAATCGAGAACGTTattaaaatttatcaaagaa
taatggaaagaaattttggtaaGGAGGAAAAAGTGATGGTTCGTGAATGG
CTTCAATCTCACTTGGTCAGTACAAacaatagtttttgaaaatataattt
tgattttccgtTTAGAGAAGACAGCCAAACATTATTTTCATAAGATTCTT
CTATGCAAAGTCATAAATCCCAAAAAACTGAATGATTCTTTAGAAATctc
ttggaattttttaaagatacatATACGGGTTTTCaagttttcaatcaaaa
catggtgataagatttcgaaaaaatgacCAACAAAAGCTGCTGTAGCATC
TTGTAAATAGTATTTCATTTGATTTCAAGTAAATATAGCTTTTTCATGTA
TGTGACATTTGTCTACATTTCACTCTAGCTTCATTGGGAGGAGGGCTGAG
CtttttaaaatagcttaaaaacggcTCATGTCTCATGCGATTAATTGGTG
AAATGGCTCCAAAGTTTATGATATAAGAC Run BLAST on NCBI protein sequence of TCONS_00068151-protein >TCONS_00068151-protein ID=TCONS_00068151-protein|Name=TCONS_00068151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MDPDLNLVIASTSTSIEIQDVSGILNSIHPNLLFDFASKSNSASSEDFKC
SKDEMLKTRDKKIFRRKQNNKASRESRLRKKEEFQRLLEEQHLKEKRKKD
LENEVAHLQGGIEELYASQERTLETAIQGNPNVSLPLFLEQLLQLIRQSA
IEKNSTGEVYSKTIENVIKIYQRIMERNFGKEEKVMVREWLQSHLVSTNN
SF Run BLAST on NCBI transcript from alignment at scaffold_48:123800..126724- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068151 ID=TCONS_00068151|Name=TCONS_00068151|organism=Clytia hemisphaerica|type=transcript|length=2925bp|location=Sequence derived from alignment at scaffold_48:123800..126724- (Clytia hemisphaerica)
GTAGCCTGCAAGCATCGAGAAAAAAAGTAAGAGAAAAGTTAAGGAATTCA
TAAAGCAACCGGGAATTTACCAAATGACAAACCTCGACGAATTTGATTGG
ATAGAAAAGATTACGTGTCATAAGAAACGTTCATAATTGCACAACCATGA
AATGAGATATTGGTAATCAAAATATTGATTTCTCGCGGTTTTCATGTAGC
GACATGAATCAAGTGAGCGAGGGAAATGGTATAAGAGTGAAAGCAGAGAG
TAGATGTTTGGCTAAGAAGAGGTGGAGAAGGTGTGCTGTTGAAGGAAAGA
AAAGTGGTCAACACAAGACAAAGAGACGCAATGCAACCAGGTCCGATTTA
TTTTATGAGATCCACGCAAGCTGAGAACACACCTGTGTCAGTGGCCCTGT
AGAATTCCTCACACGGGGAAAAATGGCTGAAATACTATCTCCGGCGAGAA
TATACCAATACATAAGTTTATTTCCAATCACCTTATGGTATTAAGCTCCT
TCATTCTATTTCTCATTGGGTCACTGAGACAGGGGTGTCAGACATGCTTG
TGCTCCGATTGTCTACTTTATTGATTTGTGAAAAGTACTAATTTGTGATC
AATAAAAGGGGCTCAGACCTTTGACAGACTTCAATCAAGAATAAACCATC
TCTTAAAAATCTGATCTGCGATGATAAAACTGATTGACATGGCTAACTTT
CATCAAATTTCTAGACACTTCTCATAATTTTACGTATAAACCAGATTTCT
CCGAAGATCTGAGCCCTTTTGACCTACCTATGTTTATTTATTTCTTGTTA
TAAATCTTACTCTTCCCTTTTTCAGCAAACAAACTCGACACCAATTGAAA
TCACAAACCGAACAAAATGTTGTAAAGCTGAATTCCTTCAAAGGGTTTAC
TTCAAGTTGATCTACTGTAAAGTACCCTTTGAATTAACGCCTTACTCAAG
CATATTCTCTGATGGTTTCATTTTAGTCAGTTTAGAAAACCAGCTTTTAT
CACAGACTCCAAGGTCTGGATAATAAATAAGCTCTTGTAAATTTATTGAA
GTGAATAGATATTGTTTTTTCCAGATAAAAAGCGTTCACCCGTTGTCAAA
TCTATTGTCAGCTGCCTTACACTTATCATTTTGAAAATACTTAACTCTTT
TCCAAATAGAGATGAGTTAACTTTTTTTAATACCTTTTTTTCTGGAAAAG
GCCGTACTAAGGAATATGTCCATCCATTTAGGTTGTGTTATCCGTCTTAC
GAGTATACAATTAATCCTTTAGAAATCTGTACAATCTATGGTCAACACCA
TGAGGAGATTGGCAGGCAATTTCATCCAGTAGATAATTGCAACTATTTTT
TGGGCGATTCTGAAGATGCACTGAAAAATGAATTTCCAGTTGGGATATTT
GCTGAGCAAAATGAACGGAGTGATGAAGGTAAGTATGGTGATGAATTTTA
ATATTGTGAGGAATCCACTGATACATATACTGTAATAAAAGATAGACGAA
ATTATGAACAGCTCTGCCAAAATCCTATCTTTTGCAACAACCTTAGTAAA
TTTCAATGTAATCTTATAAATACCAGATTATTTACTGTTTACTAGTCGGG
GTGTTGTCTATTGTTTAGATATCAAGTATGTTCAAGGAATAAAGCAAAGA
CTGATCGCCGATTGTGACGAGATCTTTGAAAGAGAAAATTCAACAAATTT
GCAAGCGCTGAGCTACGATTCAAGTAATCAGGAATTTATTGGCTTCACTG
AACTTGTAAATTCAGGCGACAAATGGTTATGTAGTGATCAAGACTCTTCA
ACTTTTAGCTCGTCAACTTTTGAAGATATTCTCGATGAATGCTCGGATTT
CTTTTGTTACGACGTACCTGTTGTAAGACAGACCTTCAGTAGCGAACAAG
AAGGTACTCTCTCTAATAATCAACCCATGGATCCAGACTTGAACCTAGTC
ATTGCATCGACCAGTACATCAATTGAAATACAAGATGTCAGTGGGATTTT
GAATAGTATACATCCAAATCTTTTGTTTGACTTTGCTTCAAAATCGAACA
GTGCTTCTTCTGAAGACTTTAAGTGTTCAAAAGATGAAATGTTGAAAACT
AGAGACAAAAAGATCTTTAGAAGAAAGCAGAATAACAAAGCATCGAGGGA
ATCTCGACTGCGCAAAAAAGAAGAATTTCAACGACTTTTAGAAGAGCAAC
ATTTGAAAGAAAAACGAAAAAAGGACTTAGAGAATGAAGTCGCTCATCTA
CAAGGCGGAATCGAGGAGCTTTACGCATCGCAAGAAAGAACATTAGAAAC
TGCAATTCAGGGAAATCCAAATGTTTCTCTACCTTTGTTTCTTGAACAAT
TATTGCAACTTATTCGTCAAAGTGCCATCGAGAAAAACTCGACGGGTGAG
GTTTACTCTAAGACAATCGAGAACGTTATTAAAATTTATCAAAGAATAAT
GGAAAGAAATTTTGGTAAGGAGGAAAAAGTGATGGTTCGTGAATGGCTTC
AATCTCACTTGGTCAGTACAAACAATAGTTTTTGAAAATATAATTTTGAT
TTTCCGTTTAGAGAAGACAGCCAAACATTATTTTCATAAGATTCTTCTAT
GCAAAGTCATAAATCCCAAAAAACTGAATGATTCTTTAGAAATCTCTTGG
AATTTTTTAAAGATACATATACGGGTTTTCAAGTTTTCAATCAAAACATG
GTGATAAGATTTCGAAAAAATGACCAACAAAAGCTGCTGTAGCATCTTGT
AAATAGTATTTCATTTGATTTCAAGTAAATATAGCTTTTTCATGTATGTG
ACATTTGTCTACATTTCACTCTAGCTTCATTGGGAGGAGGGCTGAGCTTT
TTAAAATAGCTTAAAAACGGCTCATGTCTCATGCGATTAATTGGTGAAAT
GGCTCCAAAGTTTATGATATAAGAC Coding sequence (CDS) from alignment at scaffold_48:123800..126724- >TCONS_00068151 ID=TCONS_00068151|Name=TCONS_00068151|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_48:123800..126724- (Clytia hemisphaerica)
ATGGATCCAGACTTGAACCTAGTCATTGCATCGACCAGTACATCAATTGA
AATACAAGATGTCAGTGGGATTTTGAATAGTATACATCCAAATCTTTTGT
TTGACTTTGCTTCAAAATCGAACAGTGCTTCTTCTGAAGACTTTAAGTGT
TCAAAAGATGAAATGTTGAAAACTAGAGACAAAAAGATCTTTAGAAGAAA
GCAGAATAACAAAGCATCGAGGGAATCTCGACTGCGCAAAAAAGAAGAAT
TTCAACGACTTTTAGAAGAGCAACATTTGAAAGAAAAACGAAAAAAGGAC
TTAGAGAATGAAGTCGCTCATCTACAAGGCGGAATCGAGGAGCTTTACGC
ATCGCAAGAAAGAACATTAGAAACTGCAATTCAGGGAAATCCAAATGTTT
CTCTACCTTTGTTTCTTGAACAATTATTGCAACTTATTCGTCAAAGTGCC
ATCGAGAAAAACTCGACGGGTGAGGTTTACTCTAAGACAATCGAGAACGT
TATTAAAATTTATCAAAGAATAATGGAAAGAAATTTTGGTAAGGAGGAAA
AAGTGATGGTTCGTGAATGGCTTCAATCTCACTTGGTCAGTACAAACAAT
AGTTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068151-exon-scaffold_48-1575043694:125809..126724 | TCONS_00068151-exon-scaffold_48-1575043694:125809..126724 | Clytia hemisphaerica | exon |
| TCONS_00068151-exon-scaffold_48-1575043694:125297..125452 | TCONS_00068151-exon-scaffold_48-1575043694:125297..125452 | Clytia hemisphaerica | exon |
| TCONS_00068151-exon-scaffold_48-1575043694:123800..125106 | TCONS_00068151-exon-scaffold_48-1575043694:123800..125106 | Clytia hemisphaerica | exon |
| TCONS_00068151-exon-scaffold_48-1510915933:125809..126724 | TCONS_00068151-exon-scaffold_48-1510915933:125809..126724 | Clytia hemisphaerica | exon |
| TCONS_00068151-exon-scaffold_48-1510915933:125297..125452 | TCONS_00068151-exon-scaffold_48-1510915933:125297..125452 | Clytia hemisphaerica | exon |
| TCONS_00068151-exon-scaffold_48-1510915933:123800..125106 | TCONS_00068151-exon-scaffold_48-1510915933:123800..125106 | Clytia hemisphaerica | exon |
| TCONS_00068151-exon-scaffold_48-1491911889:125809..126724 | TCONS_00068151-exon-scaffold_48-1491911889:125809..126724 | Clytia hemisphaerica | exon |
| TCONS_00068151-exon-scaffold_48-1491911889:125297..125452 | TCONS_00068151-exon-scaffold_48-1491911889:125297..125452 | Clytia hemisphaerica | exon |
| TCONS_00068151-exon-scaffold_48-1491911889:123800..125106 | TCONS_00068151-exon-scaffold_48-1491911889:123800..125106 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:123800..126724 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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