TCONS_00068164 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00068164
Unique Name	TCONS_00068164
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	757

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_48:202978..208847-

transcript sequence

>TCONS_00068164 ID=TCONS_00068164|Name=TCONS_00068164|organism=Clytia hemisphaerica|type=transcript|length=757bp
tcagataaaaaaaagatcaaaatgttagaaaattataataaaatataaat
gtGATGACATGAAAATTTGGATCGATCTTGGTTGAACAAAGTGTGAATAA
AACTGGCATTGCACAATGCGATGGAGGAAGATGTTCCTCCTGCCAACATG
CCGAGCAACCATGTCATGGCATCACCAACATTGAATCATCACCATGGAAA
CTCAACGACAGCTATACCCGCCATCTTGCGTTTCGTCATCTCACCTCAAC
AAGCAACTGACCTCACTGTCACTAACGACCACACTTTCCATGAAATTCTT
gaTGTCTTGGATGAGTATATGCAATCACATGGTGCTGGCAAACCAACTGC
TTTCGAatATGACGACGAAGATGGAGACAGAGTTACGGTCCGTTCCAATG
AAGAATTGCGCGCCATGTTGGAATGGCATCGTTGGAATAACCAGAATACA
GCCAATGGATTACGCATCGTTCCACTCAATATCTACCCCAGGGTTGCTCG
TACTTTTGCTGAACGAAACTCTACGCTGATGGTGGACATTGAGTCGCCAC
CAGTATCTCACCCCTCTTCAAGACAATCGAGCGGAAGTGGTAGCGGAGGT
GGTTCAACCGGGCGCAAGAAACCGAACAGTATTCAAGGGATCCTGAGCAG
TGGCCAGATTTATCAGCACGACATCCGAATGTTGAACATTCTTGGACATG
GCAATGGTGGAACAGTTCATAAAGGTTTTCACGTACCCAAGCAGCGTTAT
ATGGCGG

Run BLAST on NCBI

transcript from alignment at scaffold_48:202978..208847-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00068164 ID=TCONS_00068164|Name=TCONS_00068164|organism=Clytia hemisphaerica|type=transcript|length=5870bp|location=Sequence derived from alignment at scaffold_48:202978..208847- (Clytia hemisphaerica)
TCAGATAAAAAAAAGATCAAAATGTTAGAAAATTATAATAAAATATAAAT
GTGATGACATGAAAATTTGGATCGATCTTGGTTGAACAAAGTGTGAATAA
AACTGGCATTGGTAAGGCTGAATAAAATCCATTGTAAAATATTGCAAATG
AATATGTTTAGTACGTAGCCTGCTTACTCGTATGCAAAAGACAGGAGGAT
TTTTCAGAAAAACTTCTAGATCACTGGCTGATCATAACTACATTCGTCCA
CCAAAAAAAGTCCGTTCTAGAGACATAAGGATTCTTGTTTTCGTTTCTTT
ATCTCCCTGACTCTCTTTTCCAGCACAATGCGATGGAGGAAGATGTTCCT
CCTGCCAACATGCCGAGCAACCATGTCATGGCATCACCAACATTGAATCA
TCACCATGGAAACTCAACGACAGCTATACCCGCCATCTTGCGTTTCGTCA
TCTCACCTCAACAAGCAACTGACCTCACTGTCACTAACGACCACACTTTC
CATGAAATTCTTGTAGGGCTATTATTTTGAAGACACCCTCTGAGTTTCAG
CTATTTAGATATCATGGTTGAAATATATTGAGAATTTCGGAGAATTTCCC
AGCGAGAAAGTCGATTTTGGGCTATCTTTTTAATTTAATCGAATATTTCA
ATTTGGGAGGGGTTGGCAGACTTCAAGGCTATATTCTGGGCCTTATTGGA
CTATTTTTGAACTTTTGGATCCTCTGATCCTAAGCTCCTAAGTTAAAACT
CGACCCTTCCAACCTACTTTAGAGCACTTACAAATCGATTCTGATTTCAA
AACTTCCCGGTGAATTTCCCTTTTTTCTCAAATATTATGACCTTGATTGT
AGATATTATGTTAATACAATACATATTAGGGGGAGGGCCGGCCAGTACTA
CAATCTCAGACAGCACGATGTTTAGTCACGTGATGTTATACCAAATAACT
CATAAATATACCATTTTTCCTTCTTGTACCATTTTCTCTGCGCACAAACG
AAACGAAAGTTTTTTAAATCAAACAAGAAGCCGAAGCGGCGTGAAGGCCC
AGCTGACGTGGCAATAACCAAATGTCGTTTGTAACGGGTACCTTGAGAGA
ATCAATGTTTGCGGAATCGTATTTTTGCAATTTTAGGGTTTAAAGGAAAC
ATCGAGTCTTAGAATCCTAATGCACATNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAATG
CACATTTTCGGCAGAGATTGAAATACGGAACATTGAACATTCAAAAAGTT
AAAAAAGTGAAAAATGAAAAGAAAGAAACCAGCTGCGCTGGAAGGTCAGT
GGAAGGTCAGCAATGATAAATGATACGCAATAAATGTATATAATAGATTT
GCTTTATGTTTTTGTTACTAGTATGAAAGAAAAAATCGGTTTAAATAAAT
TCACAAACTTCAAATGTCAAATGTTGACCGTCAAAGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCGTCAAAGTTCAGAAATATCGATTTAACCCGTAGCATCATGAAAAA
CATTCCAAACTTATTCAAATTTACACATGAGCTGTATTTTAGTATCCTTT
AATGAATTACAGCATAAGCTTACTTGAATTGAGCTGTATTTTAGTATCCT
TTTAATGAATTACAACATAAGTTTACGTGAAAAAATTCTCTGTCAGGTTT
GAAAAATCCAGCCACCGACCGTTTAGAGCGATGATCCAAAATTGTCCATT
TTCACGGGTTGCACCATGAAAAACATCCCAAACTTATTCAAATTTACACA
TGAGCTGTATTTTAGTATCCTTTAATGAGTTACAGCATAAGTTTACTTGA
AAAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCG
GCCGCTGGTTTAGCCTGGACTACTGGACTTGTTAATCTATTGCGCGCACA
GGCTCCGACAAAGCCAAAATCTTTTCGTTCAGTTGCTTTTTAAAGGCCCG
CTTGCGCTGCGCGGCTGGGCCAAAAATTGAAAATTGATCACAATAAGATT
AAACTCAGCTCGGTAGGTTTCATTGATACTTGTAACGTGTTAAATATTTC
TTTTTCAGGATGTCTTGGATGAGTATATGCAATCACATGGTGCTGGCAAA
CCAACTGCTTTCGAATGTATTTTTTTTGTCATTTCTGTAGTGATACACTG
GGCTCAAAAGTCTGATTTTCTGACTGTTTGCAAGAACTTATTATGTGTGT
TAAGTGTCAAGTGGAATTTTTAAAGCCAAAAATCAATACGAAAACAATGC
GTGCGAAAGGTCCAAGAGTTCTTGGTCGAAGACAAGTTTCGATGAACACA
GGGTTACCCCACGTGCTTCCAAGAATGATTTCCTTATCACTCAAGTTGTA
ACCCACTTTTTAAATAAACTAATAGCATAAGGACAGCCATGTCATACCTG
CACGCCCTTTATTAATCATGTAGTTTATGCTAAGCAGTGTATCGATCACT
AATCTATCATTAAAGGGAGTCTTCTATTCAACTCTTTCGGCTCTTTCGAC
GTGCTAACAAGAATTCCCAAAAGACAGCATGCATAAAATACTTTAGACGT
GCAAACTTTCGCGAGGTCGAAAAGTCGCGAAATTTGCAACATTTACTTTC
GCGAATTTGAGGGGGAAATGTTTTTCGTGAGCATAAACTTTCGCCATTCG
TTGGATAAAAATGAGAATTTTCGAATAGAAATTGCCTTAAAAGTGAAAAT
TATTCCTTAAATCCGCTAATAAGGGTTCCTCTTCGACTTTAAAAAGGCAC
TAAAGGATAATAATATGCCGAGAATTTGATATTTATCACGAATTTGAGGT
TTTATAGATTTCCAATTTTTTTTGAGAATTTTTCGCGAATTGCCCTGTTA
AGAATTTTCAAAGACATTCACTTTCGCGAAAAAGGCCAAAATTCGCGAAA
ATCGCGAAAGTTTCTGCTCGCGAAAGTTTGTACGCCTAAAGTAGTTGATT
TCTGGAGATTTCAAAACTAATCATTAAACGAGCATTGAAATATGCGCTGC
CTTGGCCTTGACCATCAAAACATTTTGCCGAATCAATCGTCAATGACATT
TAAAAAATATAGGATTCGGAAAATTACTTTTTGTTGCAAGGTTTTAGATC
ACTTCGGTGCCAATCGTATTGTTTTATTTTGTACATTTGGTTTTGAATAA
ATTGTTATTATTTTCGATTTTGACTTCAGATGACGACGAAGATGGAGACA
GAGTTACGGTCCGTTCCAATGAAGAATTGCGCGCCATGTTGGAATGGGTA
AAATGCCTCTGCCACTTCCCCTCTCGCAATACCTTTAATTGTTTCCATGG
ATTTATCATAGAACTCTGGATACACAACGAGCTGGTTTTTCATCGATTTC
TCATGTTCTAGCCTTGTCCGCAGTAATGATATTATTGTTCACCCTCCTCC
ATTCACTAATAATTTTTCGTAAATTTTGTTGTTGCATTTTTCATCAAAAC
ACAGCTATACAATTCCCAAATGAGACTTAAAGATCTCTCAAGAGAGTCAA
TTGCATCAAATTGATTGCTAATGATATGTCGTTATGACGTTTCAAGCTGT
GAGAAAGATGCGACAAACATGCTATGTATAAGAAATTGAATGTTGACACC
AGAAAATTTCAAACTTCCACCTCGCCAAAACCACCGTGCTACGGCGTGCC
TCCAAAAGATTTTTAGACTTAAAGACTTTTTAGAAATGGGATTATTAATC
ATTTTTCAAAATCAGGGACCTTCGAGCCGCCATGACAGTTGTCCTTTGCG
GACAAAGCTAGAACATCAATTGTTTTCTAAAACAATGGATAGACAATAGT
TCGCTCTCCACCGTTTTATTTGATGTTTATCCAGAGTTCTATGATAAATC
CGTGTTGTTTCTAAAGATTATCGAGGAATTCTGAACGGGATCTACCACCA
AGCAATGTTTGTCTTTTCATCTTTATTCAGCATCGTTGGAATAACCAGAA
TACAGCCAATGGATTACGCATCGTTCCACTCAATATCTACCCCAGGGGTG
AGTCGCCAATATCCACGTACTATATCATAAAGACAACATCACTCCCATAT
CTCCCATATGATGTTCTCTCACTCTTATTTTCTTGAATGCTTATCTTATG
CACGTCTTTTTTTCAGTTGCTCGTACTTTTGCTGAACGAAACTCTACGCT
GATGGTAAGATATCTTGCCTTTGAAAAGATTGTATAGAATGATGATGTAT
AGAATGAAGCGCGTACAGTTGTACAGTGGCCGAACTTTCAGCGCACGTAG
ATTTAAAAAAGTACGGAAATGATTGATGAAGATGCTACCCTTTTAAAAGT
GCCTGAACTTATGTTTTTATTAAAAATTTGTACAATTACTAGGGTATAAC
TAATTTCAATATGAATATTTATCAAGATACGGACAATCTTTCCTTTTAAA
TACATAAAGTGCTGCACTCTTCGTATCTTTCAGGTGGACATTGAGTCGCC
ACCAGTATCTCACCCCTCTTCAAGACAATCGAGCGGAAGTGGTAGCGGAG
GTGGTTCAACCGGGTATAATTACTTCTCTTCATCTTTTCTCTTAGCAATC
AAAACTAACCTTTCTAGAACGCTTCGCACCACTACCTAATGAAGTGATTT
CAGTTTGGCGGAAAATTGATTTGATATTTGTCTTTTTCTTATTTTTGAAG
TTTATTTGGTGGCAATGGTTCATTAAATTTAATCGCAGAGATTAAATCGA
ACTCAAAGCTTTTCAAATATTTTTGAAATTTTAATCTTTCCAGGCGCAAG
AAACCGAACAGTATTCAAGGGATCCTGAGCAGTGGCCAGGTAAGACGTCC
TATTGGAGTATTTCAAAGTATTCAATTTTTTAAAATAATTTTACATGGTC
AACGGTAGGTTTATCAACCACTCATCCACAATATCCTTTCTATAGATTTA
TCAGCACGACATCCGAATGTTGAACATTCTTGGACATGGCAATGGTGGAA
CAGTTCATAAGTATGCATTTTTGTCCGTCTCCAGATGAATCAGGTCAGGA
TGTGGCAGTCGCTTTCAGATAAGATGGAGTTTTTATAAGATACTTGGTCA
TTTACTTAATTGGTCATTTGAAGTAATAAAAACGACACGCTCTTTAGAAA
AAGTAACAAAATTGTTTTATTACAAGTTAACGACCAACCACATTAAGAGC
TTGTAAAAACGTCCCGTCGCTTTGGATCTGTCTTCTTCACAAACTAGGTC
ACCGGTGGTTTAACCAACCTATCTGATTTATCACAAACAGATGAAATAGT
CGCGTTCACTAACTATTGTGACTTTTCTCTTACAGAGGTTTTCACGTACC
CAAGCAGCGTTATATGGCGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042544	XLOC_042544	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_48	supercontig	scaffold_48:202978..208847 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.288872	20.0537	11.3507	25.4643	23.2909	11.0279	18.5888	10.8882	11.9024	8.04573	13.1623	6.26437	8.00276	16.0914	9.019	6.88015	9.03307	0	5.77661e-09	0	0	12.7433	13.8946	0	0	0	0

Blast

[Close]

BLAST of TCONS_00068164 vs. Swiss-Prot (Human)
Match: MP2K5 (Dual specificity mitogen-activated protein kinase kinase 5 OS=Homo sapiens GN=MAP2K5 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 6.090e-26
Identity = 70/182 (38.46%), Postives = 101/182 (55.49%), Query Frame = 1

Query:  223 ILRFVISPQQATDLTVTNDHTFHEIL--DVLDEYMQSHGAGKPTAFEYDDEDGDRVTVRSNEELRAMLEWHRWN-NQNTANGLRIVPLNIYPRVARTFAERNS-TLMVDIEXXXXXXXXXXXXXXXXXXXXXXXRKKPNSIQGILSSGQIYQHDIRMLNILGHGNGGTVHKGFHVPKQRYMA 756
            ++R  I    A D TV   H+  ++L  DVLD   Q       TAFEY+DEDGDR+TVRS+EE++AML ++     +   NG  I PL I+PR  +   ERN   L V+              + S S   ++ +K    ++ IL++GQ+ + DIR  + LGHGNGGTV+K +HVP  + +A
Sbjct:   18 VIRIKIPNSGAVDWTV---HSGPQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMKAMLSYYYSTVMEQQVNGQLIEPLQIFPRACKPPGERNIHGLKVNTR---AGPSQHSSPAVSDSLPSNSLKKSSAELKKILANGQMNEQDIRYRDTLGHGNGGTVYKAYHVPSGKILA 193

The following BLAST results are available for this feature:

BLAST of TCONS_00068164 vs. Swiss-Prot (Human)

BLAST of TCONS_00068164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MP2K5	6.090e-26	38.46	Dual specificity mitogen-activated protein kinase ...	[more]

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TCONS_00068164 (transcript) - C. hemisphaerica