TCONS_00068331 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068331
Unique NameTCONS_00068331
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068331 ID=TCONS_00068331|Name=TCONS_00068331|organism=Clytia hemisphaerica|type=transcript|length=1820bp
GAAATAGATAGATGTATTCAATTTGAAATTAGTATCAGTGAGAAATGAAa
ttaattgattttttcaaatttagagaAATGATACAAATTAAAGCTAGTTA
CAATTCAATATTGCAGAGCATTATGGATTTGGGTGGATTTTGGTTTGACA
TTTGGTGTACAAGTCAAAGAAGTCAAGAACAAttaatccaaaaaatatca
tcagcTCGAAAGCTGACAGAATCGATGCTCCTGTCATCAAACCAACACAA
CCACCGAAATTCGCGAACAAATCTTGCCAAGTGTACGCTGGTTTTTCTTC
TATATGTTCAACAAGAAATGTATGGAAAGTGAAAGCTAGTTCGTAAAAAT
TTGGATAACTCGGAGCTTTGTGATAGTCCAACGACAATTTGATGTCTTCT
TCATAGCACGGCTGAAGTTTACAAAGACGGTTACACTCTTCAGTGACAGA
AAAATCACCTTCAACTTCCTTTAGACAGGTCTGCATCTCAGTATTATTGA
TAAAGGTTGTGTTGTCAAACCGGCGTGGTTCTCGCATGTGTTTCTTATAC
ATTTGCGGAATAGctccacatttttcaaaaactttctccCAAAAACAACC
TTTCTTGCATTTTGTCACCGTGTAGTTTCctttaaatttgttttgttcGT
AAGAACCCTTCCCTTCAACGCAGTCAGTAAAAGGCAATCCTAATCTGGTG
ATGATCTTCTTATCCAAAATCACGTGATACCAGCCTTCACTTGCCCAATA
AACAGTTGGTGACGCTTCTTGAAAAGTCTCTTCAGTTGGGTGAACATACA
GCTCAGTCCACAATTCGTCGAACGGCGTCCGATTAGCGACCGCTTGAACG
GATAAAATGTCGGACGGTACATATTGTGTGGAACCTCTAACAGTAAAACA
ATTTGTCGTATCGTCATAATCAACCAAATGATTCTGCAGACTTGAACTCG
AATAATCAGCTGTATAGTTCTGCACCTTGATCAAAGTAGTTCCGTTATAA
CCACACTGAGTTAAGTTTTGTCCACAAAGTCTCATGCTACCATCACTTAG
TAAGAGTGGACGTTTATAGGTTGGGATACCGTCAATAAAATGACGTCTCT
CTCTATTGATTGCGGCATAGTTGCAAATGGTTATCGAGGGaagtttgatt
tctttttccaCAGTAATTACAAAATTAGATACACTATGATCACTTAAGAA
AGATTCCCAATGCTCTTTAGATATCATGATAGCTGTTAACAAAGAACATG
CCACGAGGATGGACCAAATGACTTTACTCACGGCGCCACCTGTTGCTATG
CGATTGGCTCCATGTATGGTTAACCCTTCAGCGTAACTCTGTTTCTCACT
ACTGATCTTTTCTTCCATAATATTACAATTCTCTTCAAgaaatgattgtt
tttttgaCCGAGCTGTCAGTTGCTCTGGTGGTGCAAGTGATATTTTGCCA
GAAGAATCTTCACTATTGTCTCTGCTCTTAACTTGGATGATTCTTGGCTG
ACATACTTCTTCTTGTAGAGTAATATTGAAGTTTCTCTTGTTGGAAAATT
GATCATTTGTAAAACTTGTTTCAGAGCTTTCTCCCGACCGAATACTCTCT
TTGTCATCACGACCGTTGTTGGCTTGTTTCTCAAGTTTATCCAGTCGTTG
AAAAACTTCTTTTTGCTGGCTCAATAATTTCTGCGTTAGATTTATCATCT
GTTTTTCGACATTTTctgtcaatttttcaatttgtttgtcaaaattttta
gaatccaTTGCAAGATTTTCTGAGTTGACATATATCTAATcgttacattt
tttgaaaaagaattcctTTG
Run BLAST on NCBI

protein sequence of TCONS_00068331-protein

>TCONS_00068331-protein ID=TCONS_00068331-protein|Name=TCONS_00068331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=545bp
MDSKNFDKQIEKLTENVEKQMINLTQKLLSQQKEVFQRLDKLEKQANNGR
DDKESIRSGESSETSFTNDQFSNKRNFNITLQEEVCQPRIIQVKSRDNSE
DSSGKISLAPPEQLTARSKKQSFLEENCNIMEEKISSEKQSYAEGLTIHG
ANRIATGGAVSKVIWSILVACSLLTAIMISKEHWESFLSDHSVSNFVITV
EKEIKLPSITICNYAAINRERRHFIDGIPTYKRPLLLSDGSMRLCGQNLT
QCGYNGTTLIKVQNYTADYSSSSLQNHLVDYDDTTNCFTVRGSTQYVPSD
ILSVQAVANRTPFDELWTELYVHPTEETFQEASPTVYWASEGWYHVILDK
KIITRLGLPFTDCVEGKGSYEQNKFKGNYTVTKCKKGCFWEKVFEKCGAI
PQMYKKHMREPRRFDNTTFINNTEMQTCLKEVEGDFSVTEECNRLCKLQP
CYEEDIKLSLDYHKAPSYPNFYELAFTFHTFLVEHIEEKPAYTWQDLFAN
FGGCVGLMTGASILSAFELMIFFGLIVLDFFDLYTKCQTKIHPNP
Run BLAST on NCBI

transcript from alignment at scaffold_482:334179..335998

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068331 ID=TCONS_00068331|Name=TCONS_00068331|organism=Clytia hemisphaerica|type=transcript|length=1820bp|location=Sequence derived from alignment at scaffold_482:334179..335998 (Clytia hemisphaerica)
CAAaggaattctttttcaaaaaatgtaacgATTAGATATATGTCAACTCA GAAAATCTTGCAAtggattctaaaaattttgacaaacaaattgaaaaatt gacagAAAATGTCGAAAAACAGATGATAAATCTAACGCAGAAATTATTGA GCCAGCAAAAAGAAGTTTTTCAACGACTGGATAAACTTGAGAAACAAGCC AACAACGGTCGTGATGACAAAGAGAGTATTCGGTCGGGAGAAAGCTCTGA AACAAGTTTTACAAATGATCAATTTTCCAACAAGAGAAACTTCAATATTA CTCTACAAGAAGAAGTATGTCAGCCAAGAATCATCCAAGTTAAGAGCAGA GACAATAGTGAAGATTCTTCTGGCAAAATATCACTTGCACCACCAGAGCA ACTGACAGCTCGGtcaaaaaaacaatcatttcTTGAAGAGAATTGTAATA TTATGGAAGAAAAGATCAGTAGTGAGAAACAGAGTTACGCTGAAGGGTTA ACCATACATGGAGCCAATCGCATAGCAACAGGTGGCGCCGTGAGTAAAGT CATTTGGTCCATCCTCGTGGCATGTTCTTTGTTAACAGCTATCATGATAT CTAAAGAGCATTGGGAATCTTTCTTAAGTGATCATAGTGTATCTAATTTT GTAATTACTGtggaaaaagaaatcaaacttCCCTCGATAACCATTTGCAA CTATGCCGCAATCAATAGAGAGAGACGTCATTTTATTGACGGTATCCCAA CCTATAAACGTCCACTCTTACTAAGTGATGGTAGCATGAGACTTTGTGGA CAAAACTTAACTCAGTGTGGTTATAACGGAACTACTTTGATCAAGGTGCA GAACTATACAGCTGATTATTCGAGTTCAAGTCTGCAGAATCATTTGGTTG ATTATGACGATACGACAAATTGTTTTACTGTTAGAGGTTCCACACAATAT GTACCGTCCGACATTTTATCCGTTCAAGCGGTCGCTAATCGGACGCCGTT CGACGAATTGTGGACTGAGCTGTATGTTCACCCAACTGAAGAGACTTTTC AAGAAGCGTCACCAACTGTTTATTGGGCAAGTGAAGGCTGGTATCACGTG ATTTTGGATAAGAAGATCATCACCAGATTAGGATTGCCTTTTACTGACTG CGTTGAAGGGAAGGGTTCTTACgaacaaaacaaatttaaagGAAACTACA CGGTGACAAAATGCAAGAAAGGTTGTTTTTGggagaaagtttttgaaaaa tgtggagCTATTCCGCAAATGTATAAGAAACACATGCGAGAACCACGCCG GTTTGACAACACAACCTTTATCAATAATACTGAGATGCAGACCTGTCTAA AGGAAGTTGAAGGTGATTTTTCTGTCACTGAAGAGTGTAACCGTCTTTGT AAACTTCAGCCGTGCTATGAAGAAGACATCAAATTGTCGTTGGACTATCA CAAAGCTCCGAGTTATCCAAATTTTTACGAACTAGCTTTCACTTTCCATA CATTTCTTGTTGAACATATAGAAGAAAAACCAGCGTACACTTGGCAAGAT TTGTTCGCGAATTTCGGTGGTTGTGTTGGTTTGATGACAGGAGCATCGAT TCTGTCAGCTTTCGAgctgatgatattttttggattaaTTGTTCTTGACT TCTTTGACTTGTACACCAAATGTCAAACCAAAATCCACCCAAATCCATAA TGCTCTGCAATATTGAATTGTAACTAGCTTTAATTTGTATCATTtctcta aatttgaaaaaatcaattaatTTCATTTCTCACTGATACTAATTTCAAAT TGAATACATCTATCTATTTC

Coding sequence (CDS) from alignment at scaffold_482:334179..335998

>TCONS_00068331 ID=TCONS_00068331|Name=TCONS_00068331|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at scaffold_482:334179..335998 (Clytia hemisphaerica)
AtggattctaaaaattttgacaaacaaattgaaaaattgacagAAAATGT
CGAAAAACAGATGATAAATCTAACGCAGAAATTATTGAGCCAGCAAAAAG
AAGTTTTTCAACGACTGGATAAACTTGAGAAACAAGCCAACAACGGTCGT
GATGACAAAGAGAGTATTCGGTCGGGAGAAAGCTCTGAAACAAGTTTTAC
AAATGATCAATTTTCCAACAAGAGAAACTTCAATATTACTCTACAAGAAG
AAGTATGTCAGCCAAGAATCATCCAAGTTAAGAGCAGAGACAATAGTGAA
GATTCTTCTGGCAAAATATCACTTGCACCACCAGAGCAACTGACAGCTCG
GtcaaaaaaacaatcatttcTTGAAGAGAATTGTAATATTATGGAAGAAA
AGATCAGTAGTGAGAAACAGAGTTACGCTGAAGGGTTAACCATACATGGA
GCCAATCGCATAGCAACAGGTGGCGCCGTGAGTAAAGTCATTTGGTCCAT
CCTCGTGGCATGTTCTTTGTTAACAGCTATCATGATATCTAAAGAGCATT
GGGAATCTTTCTTAAGTGATCATAGTGTATCTAATTTTGTAATTACTGtg
gaaaaagaaatcaaacttCCCTCGATAACCATTTGCAACTATGCCGCAAT
CAATAGAGAGAGACGTCATTTTATTGACGGTATCCCAACCTATAAACGTC
CACTCTTACTAAGTGATGGTAGCATGAGACTTTGTGGACAAAACTTAACT
CAGTGTGGTTATAACGGAACTACTTTGATCAAGGTGCAGAACTATACAGC
TGATTATTCGAGTTCAAGTCTGCAGAATCATTTGGTTGATTATGACGATA
CGACAAATTGTTTTACTGTTAGAGGTTCCACACAATATGTACCGTCCGAC
ATTTTATCCGTTCAAGCGGTCGCTAATCGGACGCCGTTCGACGAATTGTG
GACTGAGCTGTATGTTCACCCAACTGAAGAGACTTTTCAAGAAGCGTCAC
CAACTGTTTATTGGGCAAGTGAAGGCTGGTATCACGTGATTTTGGATAAG
AAGATCATCACCAGATTAGGATTGCCTTTTACTGACTGCGTTGAAGGGAA
GGGTTCTTACgaacaaaacaaatttaaagGAAACTACACGGTGACAAAAT
GCAAGAAAGGTTGTTTTTGggagaaagtttttgaaaaatgtggagCTATT
CCGCAAATGTATAAGAAACACATGCGAGAACCACGCCGGTTTGACAACAC
AACCTTTATCAATAATACTGAGATGCAGACCTGTCTAAAGGAAGTTGAAG
GTGATTTTTCTGTCACTGAAGAGTGTAACCGTCTTTGTAAACTTCAGCCG
TGCTATGAAGAAGACATCAAATTGTCGTTGGACTATCACAAAGCTCCGAG
TTATCCAAATTTTTACGAACTAGCTTTCACTTTCCATACATTTCTTGTTG
AACATATAGAAGAAAAACCAGCGTACACTTGGCAAGATTTGTTCGCGAAT
TTCGGTGGTTGTGTTGGTTTGATGACAGGAGCATCGATTCTGTCAGCTTT
CGAgctgatgatattttttggattaaTTGTTCTTGACTTCTTTGACTTGT
ACACCAAATGTCAAACCAAAATCCACCCAAATCCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042646XLOC_042646Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068331-proteinTCONS_00068331-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068331-exon-scaffold_482-1491911889:334179..335998TCONS_00068331-exon-scaffold_482-1491911889:334179..335998Clytia hemisphaericaexon
TCONS_00068331-exon-scaffold_482-1510915933:334179..335998TCONS_00068331-exon-scaffold_482-1510915933:334179..335998Clytia hemisphaericaexon
TCONS_00068331-exon-scaffold_482-1575043694:334179..335998TCONS_00068331-exon-scaffold_482-1575043694:334179..335998Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:334179..335998 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0214751 0 0.0243947 0 0.0469358 0 0 0.0371153 0 0.178491 0.146667 3.00248 1.96213 0.200079 0.147617 0.0330639 0.203337 4.35427 6.24672 0.851692 0.498511 0.277752 0.41321 0.331019 0.865179 0.0905904 0.0322268 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001873ENaC
Vocabulary: Biological Process
TermDefinition
GO:0006814sodium ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005272sodium channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006814 sodium ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005272 sodium channel activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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