TCONS_00068343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068343
Unique NameTCONS_00068343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1009

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068343 ID=TCONS_00068343|Name=TCONS_00068343|organism=Clytia hemisphaerica|type=transcript|length=1009bp
GATACCTGCTCGAAGTACTATTACAATCATTATACCACCATGCACCATGC
ATTTCTGAAGCGCAATCGGCAGATGTATTTGGGTCTTGATCTTTGTCATA
AGTACTGAACTTCATCCCGTCGTGTTTTTCCATTCCGTAGCCTCCTCCTC
GGCGTCCAGAAACATGAAGTTTATATCCAGTGGATTCACGACCAATATCA
AAATTTGCATAACGCATGTAAGCCCTGCCGAAAGACTTTGTTATCATATC
TACCCTCAGTTCCGAGCCACTCACGATAGCTTGTGCGGTCAAACGGTATA
AATTTTCATTGCCCAGCCAATGCTCTCCTTCAAGTTTCCCAAAACCGTGT
TTATATTCTTGCCACGAACGATAAAAATTTTCCGATCCGTCGAAGCGACG
CTGAACTACCGTCCAACCACCACCATTACGATTTTGCACACAAGACACTT
GAACGACATGTCCAATAACATTCATACTAACACGATAAAGGCCATTAATC
CTCTCTCCTTTGTCATAATGTTCCTTGCAATCTCTTCTAACAGGCCTTTC
ACGGCAATCACAAAAGTAATTTACAGGTGAGGGTGGGTATACGTCATTTA
CTAAACCGTATTCTTCGACGCACAAACAGGATCCACAACGATTCGAATTG
ATTTGACAAATTCCATTTCGTGTTTGCActcttgatttcaattctttgat
ttcagatttttcgttGGCAACTTCAGTCtgaagtttttgaatttgagaCT
GCAGCAGGTCGATGTCACTAGATGCGTCCAAAAGTGGAAGCGAAACGAGG
AAGACCAAGAACAGTTTCATCTTGAGAACTGATAGTTACTCAATACTGAT
TGACGAATGATGAAAAAATAACTTTAGCTTTTATTTTATGTTCACGACAC
CTCTAGACTGAATATCCGAAGCAAAGATATCCAGGCTAGTCTAAAAATGC
TTCTGCCAGAACAGGTGAAAAGATGTGTAAACTTTTCCACCCACGTTAAA
TCGATAACT
Run BLAST on NCBI

transcript from alignment at scaffold_483:218764..219772+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068343 ID=TCONS_00068343|Name=TCONS_00068343|organism=Clytia hemisphaerica|type=transcript|length=1009bp|location=Sequence derived from alignment at scaffold_483:218764..219772+ (Clytia hemisphaerica)
GATACCTGCTCGAAGTACTATTACAATCATTATACCACCATGCACCATGC
ATTTCTGAAGCGCAATCGGCAGATGTATTTGGGTCTTGATCTTTGTCATA
AGTACTGAACTTCATCCCGTCGTGTTTTTCCATTCCGTAGCCTCCTCCTC
GGCGTCCAGAAACATGAAGTTTATATCCAGTGGATTCACGACCAATATCA
AAATTTGCATAACGCATGTAAGCCCTGCCGAAAGACTTTGTTATCATATC
TACCCTCAGTTCCGAGCCACTCACGATAGCTTGTGCGGTCAAACGGTATA
AATTTTCATTGCCCAGCCAATGCTCTCCTTCAAGTTTCCCAAAACCGTGT
TTATATTCTTGCCACGAACGATAAAAATTTTCCGATCCGTCGAAGCGACG
CTGAACTACCGTCCAACCACCACCATTACGATTTTGCACACAAGACACTT
GAACGACATGTCCAATAACATTCATACTAACACGATAAAGGCCATTAATC
CTCTCTCCTTTGTCATAATGTTCCTTGCAATCTCTTCTAACAGGCCTTTC
ACGGCAATCACAAAAGTAATTTACAGGTGAGGGTGGGTATACGTCATTTA
CTAAACCGTATTCTTCGACGCACAAACAGGATCCACAACGATTCGAATTG
ATTTGACAAATTCCATTTCGTGTTTGCActcttgatttcaattctttgat
ttcagatttttcgttGGCAACTTCAGTCtgaagtttttgaatttgagaCT
GCAGCAGGTCGATGTCACTAGATGCGTCCAAAAGTGGAAGCGAAACGAGG
AAGACCAAGAACAGTTTCATCTTGAGAACTGATAGTTACTCAATACTGAT
TGACGAATGATGAAAAAATAACTTTAGCTTTTATTTTATGTTCACGACAC
CTCTAGACTGAATATCCGAAGCAAAGATATCCAGGCTAGTCTAAAAATGC
TTCTGCCAGAACAGGTGAAAAGATGTGTAAACTTTTCCACCCACGTTAAA
TCGATAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042657XLOC_042657Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068343-exon-scaffold_483-1491911889:218764..219772TCONS_00068343-exon-scaffold_483-1491911889:218764..219772Clytia hemisphaericaexon
TCONS_00068343-exon-scaffold_483-1510915933:218764..219772TCONS_00068343-exon-scaffold_483-1510915933:218764..219772Clytia hemisphaericaexon
TCONS_00068343-exon-scaffold_483-1575043694:218764..219772TCONS_00068343-exon-scaffold_483-1575043694:218764..219772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:218764..219772 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.223474	0.342433	0.0502121	0.0982495	0.314239	0.442029	0.0644759	0	0.293738	0.0462894	0	0.213348	7.51323	5.11153	13.6466	23.0778	2.96538	3.58952	0.965754	0.999391	1.4306	1.79349	6.75349	5.29611	2.90316	4.35666	0.610106	0.307916	27.1324	30.676
Blast
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BLAST of TCONS_00068343 vs. Swiss-Prot (Human)
Match: FBCD1 (Fibrinogen C domain-containing protein 1 OS=Homo sapiens GN=FIBCD1 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 6.981e-37
Identity = 79/189 (41.80%), Postives = 107/189 (56.61%), Query Frame = -1 
Query:   14 CDCRERPVRRDCKEHYDKGERINGLYRVSMNVIGHVVQVSCVQNRNGGGWTVVQRRFDGSENFYRSWQEYKHGFGKLEGEHWLGNENLYRLTAQAIVSGSELRVDMITKSFGRAYMRYANFDIG-----RESTGYKLHVSGRRG-GGYGMEKHDGMKFSTYDKDQDPNTSADCASEMHGAWWYNDCNST 562
            C    RP  RDC +    G++ +G+Y V         QV C    +GGGWTV QRR DGS NF+R W  Y+ GFG+L GEHWLG + ++ LT QA     EL VD+     G AY RY +F +G      E  GY L V+   G  G  + KH GM+F+T D+D D ++  +CA+   GAWWY +C+++
Sbjct:  235 CATGSRP--RDCLDVLLSGQQDDGVYSVFPTHYPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWDAYRDGFGRLTGEHWLGLKRIHALTTQAAY---ELHVDLEDFENGTAYARYGSFGVGLFSVDPEEDGYPLTVADYSGTAGDSLLKHSGMRFTTKDRDSD-HSENNCAAFYRGAWWYRNCHTS 417
The following BLAST results are available for this feature:
BLAST of TCONS_00068343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBCD16.981e-3741.80Fibrinogen C domain-containing protein 1 OS=Homo s... [more]
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