TCONS_00068704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068704
Unique NameTCONS_00068704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068704 ID=TCONS_00068704|Name=TCONS_00068704|organism=Clytia hemisphaerica|type=transcript|length=555bp
TCtttagaaaatatcaaaattccaGTAGACTTTGTGTTAAAGCTCTATCT
AATTCCTGTTGTTCTAAAATGTCTACTAGTCCTTCATGAAAGTCCCTTTC
CATTTCCAGGTTCTCTTTCTGAATCCTTTCCTCTTGTTTTCTTTGTTTAC
GTTCACGTTCTTCTTGACGTCTCTCATCCCGTTCTTTTAGTTCGCAAAGA
CGTTTCTCGTACATTCTTTTATCGTCGCGTCGCATTTTCTCCATAGCTTT
TTGTTCTAATTTAAACCGCTGGATTTCGTCCCGTTCTCTCTCGTAAGCTG
TCTGGTACCGTGTTAACGTAAATGCCGTATTCACGTTTTCCTTAAGTATG
GTCACGCTACGAAGTTTTAATGAATTTTCAATGAATTTGCTTAACTTAGG
CAGCTCCATGTGCAAATCCGACTCGTCTTCCAAATTAGTATATTTCGGAA
CAAGATGAACAGTCGGATGTCGCCTCCCACGGACATTCCTTAATATTTGC
TCTTCCACGATATCACAATGTAGCTTCACTTTGTCGTCGTCTGATGAAAG
TTCTT
Run BLAST on NCBI

protein sequence of TCONS_00068704-protein

>TCONS_00068704-protein ID=TCONS_00068704-protein|Name=TCONS_00068704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
ELSSDDDKVKLHCDIVEEQILRNVRGRRHPTVHLVPKYTNLEDESDLHME
LPKLSKFIENSLKLRSVTILKENVNTAFTLTRYQTAYERERDEIQRFKLE
QKAMEKMRRDDKRMYEKRLCELKERDERRQEERERKQRKQEERIQKENLE
MERDFHEGLVDILEQQELDRALTQSLLEF
Run BLAST on NCBI

transcript from alignment at scaffold_487:95844..96398

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068704 ID=TCONS_00068704|Name=TCONS_00068704|organism=Clytia hemisphaerica|type=transcript|length=555bp|location=Sequence derived from alignment at scaffold_487:95844..96398 (Clytia hemisphaerica)
AAGAACTTTCATCAGACGACGACAAAGTGAAGCTACATTGTGATATCGTG
GAAGAGCAAATATTAAGGAATGTCCGTGGGAGGCGACATCCGACTGTTCA
TCTTGTTCCGAAATATACTAATTTGGAAGACGAGTCGGATTTGCACATGG
AGCTGCCTAAGTTAAGCAAATTCATTGAAAATTCATTAAAACTTCGTAGC
GTGACCATACTTAAGGAAAACGTGAATACGGCATTTACGTTAACACGGTA
CCAGACAGCTTACGAGAGAGAACGGGACGAAATCCAGCGGTTTAAATTAG
AACAAAAAGCTATGGAGAAAATGCGACGCGACGATAAAAGAATGTACGAG
AAACGTCTTTGCGAACTAAAAGAACGGGATGAGAGACGTCAAGAAGAACG
TGAACGTAAACAAAGAAAACAAGAGGAAAGGATTCAGAAAGAGAACCTGG
AAATGGAAAGGGACTTTCATGAAGGACTAGTAGACATTTTAGAACAACAG
GAATTAGATAGAGCTTTAACACAAAGTCTACtggaattttgatattttct
aaaGA

Coding sequence (CDS) from alignment at scaffold_487:95844..96398

>TCONS_00068704 ID=TCONS_00068704|Name=TCONS_00068704|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_487:95844..96398 (Clytia hemisphaerica)
GAACTTTCATCAGACGACGACAAAGTGAAGCTACATTGTGATATCGTGGA
AGAGCAAATATTAAGGAATGTCCGTGGGAGGCGACATCCGACTGTTCATC
TTGTTCCGAAATATACTAATTTGGAAGACGAGTCGGATTTGCACATGGAG
CTGCCTAAGTTAAGCAAATTCATTGAAAATTCATTAAAACTTCGTAGCGT
GACCATACTTAAGGAAAACGTGAATACGGCATTTACGTTAACACGGTACC
AGACAGCTTACGAGAGAGAACGGGACGAAATCCAGCGGTTTAAATTAGAA
CAAAAAGCTATGGAGAAAATGCGACGCGACGATAAAAGAATGTACGAGAA
ACGTCTTTGCGAACTAAAAGAACGGGATGAGAGACGTCAAGAAGAACGTG
AACGTAAACAAAGAAAACAAGAGGAAAGGATTCAGAAAGAGAACCTGGAA
ATGGAAAGGGACTTTCATGAAGGACTAGTAGACATTTTAGAACAACAGGA
ATTAGATAGAGCTTTAACACAAAGTCTACtggaattttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042861XLOC_042861Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068704-proteinTCONS_00068704-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068704-exon-scaffold_487-1491911889:95844..96398TCONS_00068704-exon-scaffold_487-1491911889:95844..96398Clytia hemisphaericaexon
TCONS_00068704-exon-scaffold_487-1510915933:95844..96398TCONS_00068704-exon-scaffold_487-1510915933:95844..96398Clytia hemisphaericaexon
TCONS_00068704-exon-scaffold_487-1575043694:95844..96398TCONS_00068704-exon-scaffold_487-1575043694:95844..96398Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_487supercontigscaffold_487:95844..96398 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.51162	4.29955	2.08975	2.27166	1.65932	1.09268	1.58193	2.34489	2.33296	9.3114	3.53204	1.43407	5.6601	4.39085	11.4701	10.3097	2.30922	5.36492	16.2408	24.979	0.793107	0.145069	8.69994	8.6577	7.48607	7.1724	93.6385	97.2326	127.351	103.661
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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