TCONS_00068923 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068923
Unique NameTCONS_00068923
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068923 ID=TCONS_00068923|Name=TCONS_00068923|organism=Clytia hemisphaerica|type=transcript|length=345bp
ATTTTAAATATAATATTGTTTGTTTATTGATAGTATGGAAAGAAAAactt
attttaaataaattgaACTACAGTAGAAAAGTGTGGTATGGGAAACTGTT
TGGGAACCTCACCTTCCTCATCGCAAGCTTCTGCTCCGAAAGCACAATTG
AATATCTCTGGTGCAGCCACACAACCCAAGAGTCGAAATGTTTATGTTAC
TGATCAACAAGACCGTATACCACCCCCGCCCTCCAAAGAAGCTCCACCCA
CACCTCCCTTCCCAAATCCTAATGCAACGTTAGTGGTTGGCATCTACAGT
TATCATGCACGAACAGATGACGACTTGTCTTTCAATAAAGGTAAC
Run BLAST on NCBI

transcript from alignment at scaffold_49:258954..259298

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068923 ID=TCONS_00068923|Name=TCONS_00068923|organism=Clytia hemisphaerica|type=transcript|length=345bp|location=Sequence derived from alignment at scaffold_49:258954..259298 (Clytia hemisphaerica)
GTTACCTTTATTGAAAGACAAGTCGTCATCTGTTCGTGCATGATAACTGT
AGATGCCAACCACTAACGTTGCATTAGGATTTGGGAAGGGAGGTGTGGGT
GGAGCTTCTTTGGAGGGCGGGGGTGGTATACGGTCTTGTTGATCAGTAAC
ATAAACATTTCGACTCTTGGGTTGTGTGGCTGCACCAGAGATATTCAATT
GTGCTTTCGGAGCAGAAGCTTGCGATGAGGAAGGTGAGGTTCCCAAACAG
TTTCCCATACCACACTTTTCTACTGTAGTtcaatttatttaaaataagtT
TTTCTTTCCATACTATCAATAAACAAACAATATTATATTTAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042943XLOC_042943Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068923-exon-scaffold_49-1491911889:258954..259298TCONS_00068923-exon-scaffold_49-1491911889:258954..259298Clytia hemisphaericaexon
TCONS_00068923-exon-scaffold_49-1510915933:258954..259298TCONS_00068923-exon-scaffold_49-1510915933:258954..259298Clytia hemisphaericaexon
TCONS_00068923-exon-scaffold_49-1575043694:258954..259298TCONS_00068923-exon-scaffold_49-1575043694:258954..259298Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:258954..259298 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.6954	13.4824	14.7682	10.1139	51.3615	45.3124	63.3874	64.0522	45.9436	59.3592	40.9651	36.3105	55.6913	51.1695	63.2505	64.2213	75.5905	59.8145	74.8724	80.0896	48.1738	53.1462	46.66	48.1312	62.7377	56.7418	45.7853	36.6475	63.6987	67.5539
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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