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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068847 ID=TCONS_00068847|Name=TCONS_00068847|organism=Clytia hemisphaerica|type=transcript|length=536bp
TTTTAACGCAACTCGTGATGGTTCGATGTGCGGAGAAGAAGTCAAAATGT
GTGCTAAAGAATGTATGGGTGGACGACCAACAAACAAACCAAGACCTACA
CCTAACTCGTGTTTTATGGATTGCCGTAAAGCAGTTTTCAAGTGTAAAAA
TGGTTCGAGGGATCCAAACGCATGCATGGCTTTTGCCAAGAGATGTGCAG
GCGAATGTTGTGCCTTAACATGTCGCAAAAGAATGCAAAGATGTTTGATG
AGGACAAAAGATTTCAGAATGTGCTCGATAGACGCTCAAAAGTGTTATCG
AAGATGCTCCAATTAAAGAAGATCAACTACTTGTGAATGTGAAGAGAAAA
TGaacataagaaaaataaaaagtttcctTTTTGTTCAGAATGCCCAATTT
CAACGACATCCAACCATTTTTGAGCCAGTCCTAAGTTTTAGTCTCGTTTC
GGCTTAAAATTTTTCACTAgacacaaaaaatcaaatttgtttgaaaaata
aaaaaaaacacccaaAGTTTTCCCCTAAGGAACAAG Run BLAST on NCBI transcript from alignment at scaffold_49:362072..363717- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068847 ID=TCONS_00068847|Name=TCONS_00068847|organism=Clytia hemisphaerica|type=transcript|length=1646bp|location=Sequence derived from alignment at scaffold_49:362072..363717- (Clytia hemisphaerica)
TTTTAACGCAACTCGTGATGGTTCGATGTGCGGAGAAGAAGTCAAAATGT
GTGCTAAAGAATGTATGGGTGGACGACCAACAAACAAACCAAGACCTACA
CCTAACTCGTGTTTTATGGATGTAAGAACTACATTTCTTGCTAACTGTTA
ATTGTTAATGTTTGGGTAACTGGAAACCTTTATATTTATTTATCAAACTA
TATTCTTTTCAACTTTAGTGCAGAAAGTCGTTCATGAAATGTTTTAACGC
AACTCGTGATGCTTCGATGTGCGGAGAAGAAGCCAAAATGTGTGCTAAAG
AATGTATGGGTGGACGACCAACAAACAAACCAAGACCTACACCTAACTCT
TGTTTTATGAATGTAAGAATTATAATTCTTGCTAACTGTTAATGTTTCGG
TAACTGGAAAACCTTTATATTTATTTAACAAAGCACTGAGTAAAGAAAAC
GTTTCATGTCATCCAGGATGGCAATCTTCAGAGACTAACTGCTAATGTTT
TAATAATAGTACAAGACACTTTATTTTCTTCTTTTCTTTTTCTTAATCAA
ACTTTAGTGCATCATCAAACTGATGCAAGAAAAAGGTTTGAAAAGAGCTT
TTGCAATAAATTTCATTGCATTTCATTAATCTTTAGTGCCGTAAAGCAGT
TTTCAAGTGTAAAANAAAAGGTTTGAAAAGAGTTTTTGCAATAAATTTCA
TTGCATTTCATTAATCTTTAGTGCCGTAAAGCAGTTTTCAAGTGTAAAAA
TGGTTCGAGGGATCCAAACGCATGCATGGCTTTTGCCAAGAGATGTGCAG
GCGAATGTTGTGCCTTAACAGTAAGTAAAAAAATGTTTTCCATCCTGTCA
GTTGTTGACTCGATAAGCCTGAATTTCATATCACCCTTAAAACACGAACT
GTTACTGCCCTAAATACTGGGATTAATTTTCCCGATGATTTCGCGGATTT
GTTTGTCATCCACGAAAATAAGTCCCAATTGAAATCGGAAAAGGTGTTAT
CAGCGAATTTTTTTTTGAATTAAATTCCTAAAAAATGTCAATTTTATCTC
ATAATAGAGTCATCTGCAAAATTGAGTCCCTGCGAAATCTTGAAATTTTG
CGCATGAGCTTTACCGCGAAATTTAATCCCCGCGAAAATTAAGACTATTA
AAGTATTCATGTTGGTTCGAAAAATGAAACTCTCAAGCTAGTGAATACGA
CTTGACCAAGGAAAACGGACAACGATTTGCTTGCTTGCTTTTACTTGATA
GGTAGGTCTAATGAAGAGAAGGGCCAATATATCAATAGCATAGGACAAAT
TATGAAGTGAACGTCTTCTTTCTCTTAAAGTGTCGCAAAAGAATGCAAAG
ATGTTTGATGAGGACAAAAGATTTCAGAATGTGCTCGATAGACGCTCAAA
AGTGTTATCGAAGATGCTCCAATTAAAGAAGATCAACTACTTGTGAATGT
GAAGAGAAAATGAACATAAGAAAAATAAAAAGTTTCCTTTTTGTTCAGAA
TGCCCAATTTCAACGACATCCAACCATTTTTGAGCCAGTCCTAAGTTTTA
GTCTCGTTTCGGCTTAAAATTTTTCACTAGACACAAAAAATCAAATTTGT
TTGAAAAATAAAAAAAAACACCCAAAGTTTTCCCCTAAGGAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068847-exon-scaffold_49-1575043694:363597..363717 | TCONS_00068847-exon-scaffold_49-1575043694:363597..363717 | Clytia hemisphaerica | exon |
| TCONS_00068847-exon-scaffold_49-1575043694:362898..362996 | TCONS_00068847-exon-scaffold_49-1575043694:362898..362996 | Clytia hemisphaerica | exon |
| TCONS_00068847-exon-scaffold_49-1575043694:362072..362387 | TCONS_00068847-exon-scaffold_49-1575043694:362072..362387 | Clytia hemisphaerica | exon |
| TCONS_00068847-exon-scaffold_49-1510915933:363597..363717 | TCONS_00068847-exon-scaffold_49-1510915933:363597..363717 | Clytia hemisphaerica | exon |
| TCONS_00068847-exon-scaffold_49-1510915933:362898..362996 | TCONS_00068847-exon-scaffold_49-1510915933:362898..362996 | Clytia hemisphaerica | exon |
| TCONS_00068847-exon-scaffold_49-1510915933:362072..362387 | TCONS_00068847-exon-scaffold_49-1510915933:362072..362387 | Clytia hemisphaerica | exon |
| TCONS_00068847-exon-scaffold_49-1491911889:363597..363717 | TCONS_00068847-exon-scaffold_49-1491911889:363597..363717 | Clytia hemisphaerica | exon |
| TCONS_00068847-exon-scaffold_49-1491911889:362898..362996 | TCONS_00068847-exon-scaffold_49-1491911889:362898..362996 | Clytia hemisphaerica | exon |
| TCONS_00068847-exon-scaffold_49-1491911889:362072..362387 | TCONS_00068847-exon-scaffold_49-1491911889:362072..362387 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:362072..363717 - |
Blast
The following BLAST results are available for this feature:
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