TCONS_00068943 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068943
Unique NameTCONS_00068943
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068943 ID=TCONS_00068943|Name=TCONS_00068943|organism=Clytia hemisphaerica|type=transcript|length=357bp
TAGTTGTTTTGGACAACGCGGtggcctattgaataacaaattactccaca
tacattactttcccagccaataaaaacgtgaTAGATTATCCCAGTGTGGA
AACGATGCAAAGTCCAtgccaaattattatttgatTAAAGTTGGGTGCAC
GCTGAAAGAAGTTCGGCTTGCAGAAAAGGCGGGCGAATATGCAAGGTTTT
TTTTCACTCAACGGGTCAGGGCTGAGCCCTGCCTGGTGGGGGTTCAGGGG
GCGAAACCCCTGAATGAAAGCTCTGAGATTTTGATCTTCTCATTTctaaa
agttgctcaaaatttcTAGAAAAAGAGCTTAAATTGCTGGTTCTTCGAAA
AAAGTAG
Run BLAST on NCBI

transcript from alignment at scaffold_49:882802..883158

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068943 ID=TCONS_00068943|Name=TCONS_00068943|organism=Clytia hemisphaerica|type=transcript|length=357bp|location=Sequence derived from alignment at scaffold_49:882802..883158 (Clytia hemisphaerica)
CTACTTTTTTCGAAGAACCAGCAATTTAAGCTCTTTTTCTAgaaattttg
agcaacttttagAAATGAGAAGATCAAAATCTCAGAGCTTTCATTCAGGG
GTTTCGCCCCCTGAACCCCCACCAGGCAGGGCTCAGCCCTGACCCGTTGA
GTGAAAAAAAACCTTGCATATTCGCCCGCCTTTTCTGCAAGCCGAACTTC
TTTCAGCGTGCACCCAACTTTAatcaaataataatttggcaTGGACTTTG
CATCGTTTCCACACTGGGATAATCTAtcacgtttttattggctgggaaag
taatgtatgtggagtaatttgttattcaataggccaCCGCGTTGTCCAAA
ACAACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042963XLOC_042963Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068943-exon-scaffold_49-1491911889:882802..883158TCONS_00068943-exon-scaffold_49-1491911889:882802..883158Clytia hemisphaericaexon
TCONS_00068943-exon-scaffold_49-1510915933:882802..883158TCONS_00068943-exon-scaffold_49-1510915933:882802..883158Clytia hemisphaericaexon
TCONS_00068943-exon-scaffold_49-1575043694:882802..883158TCONS_00068943-exon-scaffold_49-1575043694:882802..883158Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:882802..883158 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.239714	0.467519	1.6285	0.531078	0.589196	0.255451	0	0	0.202003	0	0	0	0	0	0	0.230609	0	0.368891	0	0	0.463539	0.204351	0	0	0	0.229697	0.885689	0.62868	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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