TCONS_00068986 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068986
Unique NameTCONS_00068986
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068986 ID=TCONS_00068986|Name=TCONS_00068986|organism=Clytia hemisphaerica|type=transcript|length=350bp
AGTTTTTACTAAATACCTccaagatgcgttttttgatcATATTTGTAACA
CTTGTTGTTGTTACCCTAGCTTGTAAAGACACCAGTCGCAATTGCATGTT
CCATTCGTGTAATTCTCTGGATAGTGTTGAGAAAGCATTTATGAAAGCAA
ATTGTGCACGATTCTGTGGTTTCTGTAGTCCAATACCTTGTTATGACAAA
TGGGGAGGTTGTGCCGGCTTCCAGAGTTTCTGCACCACAAGTAGAACCAT
CCGAACAGAGCGCTGTCGAAAAACGTGCGGTACGTGCAAGTAAAGACAAC
TCATGACAGAAGGTTATCCATGACCCTGGAACCTGGAAAAGAAAgcgata
Run BLAST on NCBI

transcript from alignment at scaffold_491:114943..118373-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068986 ID=TCONS_00068986|Name=TCONS_00068986|organism=Clytia hemisphaerica|type=transcript|length=3431bp|location=Sequence derived from alignment at scaffold_491:114943..118373- (Clytia hemisphaerica)
AGTTTTTACTAAATACCTCCAAGATGCGTTTTTTGATCATATTTGTAACA
CTTGTTGTTGTTACCCTAGGTGAGTATCATAAATGAAAAACAATTCAAAT
ATCGAATGTGAAGTGGCAGGGCTTCGATATTTAATTACCAACCAGTCTTT
ACATATAAAATAAGTTATTTGCCTGACATGCACCTTGATTTTGAAAGTGG
AGGGCCTAGGACAACAACATTTTTTCACCTGAATTGAGATTATTGGGGGG
TGGATAGTATGTCCGGGGGGTAGTGAAAAATCTACAAAATTTGCCTTGTC
CGGGGGTAAATATGCTCTGTTTGGGGGTAATTTTGCTCTATTTGAGTGTA
ATTTTGAGTGTCCAGGTGGTCAAACTAATGCTTGTCCCGGGGGGTGGGGG
GTTAGACATGGTGTCCGGGGTCAAAAGTCACAATGTTCGGGGGTAAATTT
CAAAAAAATGTTATTAACTTCCAACCCCATATTCAATTTTTTCTATTTAC
GCCAAGTTTGAAATGAAAAGTGTTTTTATCGTTATTTTGTTTTCAGCTTG
TAAAGACACCAGTCGCAATTGCATGTTCCATTCGTGTAATTCTCTGGATA
GTGTTGAGAAAGCATTTATGAAAGCAAATTGTGCACGATTCTGTGGTTTC
TGTAGTCCAAGTAAGTACATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTTGAATCAAAGGATGCCGCCATTTAAAGGGA
ATTTAAAAGGATACTTCAAGTGCGCACGTGTTTTTTCGCCGATTTTTCTC
TCTTTTTCTCTCTTTTTTAATTAAAAAAATCAAATGTTACGCACAAAATG
TTTGCGTGTAACATATGTTAACATTTCTTGAGCACATTTTTGAAATCTTC
TATTTTTAGAAATGTTAGTAAATGTTACACAAAAATGTTACCGTCTAACA
AGACCTTAAAGGCCGTCTATCCGTAAGACGATCTGCCCAGGTCGGTGCAT
CGCTATGATCTATGTCATCCTGATTTGGGATGGATATTAAATGAGCTTTT
GATTGGCTAAAGCCAATTGTCAAAGTCAAAGTCAATCGTCTACATAAACA
ATACATATTTTTTAAACATTAAAGCCCAGTCGCTGTCGCTTTCGTTTTCA
AGCAAAAGGCAACGCAGTTATGATTATTTTGGCTGAATAATAAGGTCAAA
TTGTCACATTAGCTTTAGAGCATATTATGTGCAGAATGGATGATCTGTTA
CAACAAGTTAAAGTTTGTCTTTTTTGTGCTTCTTTTTTCACTTTCAAATA
ATTCTTCCTTTGACTTTTCTCACTATTTTCACGATTAAACAAAGTGATGC
ACCATTCGATCCCCTTCAATCGCTTTTAACAATTGAGCAAATTTTGTTAC
TGCACGCTTTCAAGGTCTGTAGATTTATAACGCGATGTCTGAAACTACAG
AAACTTGATCAAAAATATTAAACTGACGCCATTGGTCAGTTTGATCCAAT
AAGAGCTTTTACTCCCAAGAATTGTTGGGTAACGTTCACAGTCTAGCAAA
CCTAAATGAATTTAAAGTCCATGTTGTAAGAAAAGCGTATTTTTGCTTGA
CAAAACAATTAACCTTGGACAACTAACCGAAGTGTATATAATCTTCAAAA
ATTGAGGTTTTCGAAATGAATTCTTATAGAATCAACTGTACGATGGGGCG
AATGTACTCTGTACAAGAGTGTATCTCACGTTTATCAATTCATAGTACAC
TCTGTATGCATTGTCTGCTTGATAAAAAATACGGAGACCGTACGGAGACC
TCTGCGATGAAGTATGATTTATAGAGAGCGACACTTCTCTCATCGTCTNN
CAACACTCCATCGCAGCGGTCGGTTTGAAAAATCTCAAATGAGAAAAGGC
AATGACAACAGACCCTCTACGGCAATGAATTTTGAAATTAGCCGTAGATA
CTGGGTCTGTCGCCCGAGGGATCTTATCCGGAGGTTAGCTGCCCCCCATG
ATAATCAAATCTCATTTAGTCTATCGCATGATATAAAATATATATTTTGG
AAATTACTTTTTAGTACCTTGTTATGACAAATGGGGAGGTTGTGCCGGCT
TCCAGAGTTTCTGCACCACAAGTAGAACCATCCGAACAGAGCGCTGTCGA
AAAACGTGCGGTACGTGCAAGTAAAGACAACTCATGACAGAAGGTTATCC
ATGACCCTGGAACCTGGAAAAGAAAGCGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042986XLOC_042986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068986-exon-scaffold_491-1575043694:118305..118373TCONS_00068986-exon-scaffold_491-1575043694:118305..118373Clytia hemisphaericaexon
TCONS_00068986-exon-scaffold_491-1575043694:117714..117827TCONS_00068986-exon-scaffold_491-1575043694:117714..117827Clytia hemisphaericaexon
TCONS_00068986-exon-scaffold_491-1575043694:114943..115109TCONS_00068986-exon-scaffold_491-1575043694:114943..115109Clytia hemisphaericaexon
TCONS_00068986-exon-scaffold_491-1510915933:118305..118373TCONS_00068986-exon-scaffold_491-1510915933:118305..118373Clytia hemisphaericaexon
TCONS_00068986-exon-scaffold_491-1510915933:117714..117827TCONS_00068986-exon-scaffold_491-1510915933:117714..117827Clytia hemisphaericaexon
TCONS_00068986-exon-scaffold_491-1510915933:114943..115109TCONS_00068986-exon-scaffold_491-1510915933:114943..115109Clytia hemisphaericaexon
TCONS_00068986-exon-scaffold_491-1491911889:118305..118373TCONS_00068986-exon-scaffold_491-1491911889:118305..118373Clytia hemisphaericaexon
TCONS_00068986-exon-scaffold_491-1491911889:117714..117827TCONS_00068986-exon-scaffold_491-1491911889:117714..117827Clytia hemisphaericaexon
TCONS_00068986-exon-scaffold_491-1491911889:114943..115109TCONS_00068986-exon-scaffold_491-1491911889:114943..115109Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_491supercontigscaffold_491:114943..118373 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.964879	0	0.807215	0.787904	0	0.599421	42.194	33.8117	4.21604	2.14731	3.21107	2.45786	103.244	92.3638	9.24447	6.76369	6.86988	9.35629	5.81878	7.08506	0.845531	0	0.0752441	0.204417
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068986 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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