TCONS_00069219 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069219
Unique NameTCONS_00069219
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069219 ID=TCONS_00069219|Name=TCONS_00069219|organism=Clytia hemisphaerica|type=transcript|length=555bp
CTCTTACAAATCGCGTaattagagagactttggatCATTGTCTTTTAGCC
TGTATCTTGGCAAACCCCCTTGCAAACACCCGAATCACAATTGGTTATAA
CTCCGGACACAGACGAAGAACTTGACAGAACTATTCAAGAGTCATCCCAA
GAAGCAACGAATGAAACGGATAATGCTGAAGTATCCTGTCCAATATGCCT
GGATAGCCTAAAGAACCATAATTATATTTACAGCATGGAATGTGGGCATT
GTGCAGGTTCTTCATGTCTCAAAAAATGGctaaaggaaaacaaaaagtgT
CCTCTATGTTCCAAGACGGTCGATTTCAAAGAACTGCGCAAAGTATACGT
GAAATAAAAATGCTAACTCGTAAAAAGTTAGTGAAGTATCCCACATATAT
TCTTCATGTTCTTACTTACTGTACTTTGTTCTTATGGAAAATGTGTATAT
TGTAAGTATTGTAAATAGGATCAGTCCAGTTAATTTTGTCactggatttt
tttataaaggGATGAAAGTCATTGAATTATCAGGCAGATTGATAATTGTT
ATTTG
Run BLAST on NCBI

transcript from alignment at scaffold_496:252..1888-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069219 ID=TCONS_00069219|Name=TCONS_00069219|organism=Clytia hemisphaerica|type=transcript|length=1637bp|location=Sequence derived from alignment at scaffold_496:252..1888- (Clytia hemisphaerica)
CTCTTACAAATCGCGTAATTAGAGAGACTTTGGATCATTGTCTTTTAGCC
TGTATCTTGGCAAACCCCCTTGCAAACACCCGAATCACAATTGGTTATAA
CTCCGGACACAGACGAAGTAAGTATATTTGCAATTTAATGAATGATCCTA
ATAATCAGACTTCGTCAGCAAAACGTTGCTATTTTTAAATGAGAAGTTCT
GAAAATTTGAAAGAAAAATTTCAAGTATTTGTATTTGTAATAAACCCTGA
CTTTAGTTAATTAACAAATTCAAAAGAATAATTAATTCTATATTATATTA
CGCTAATCACAGAAAAGAAAAACACAACACAATTCGTTTTTGTTTGTAGC
TGCTAAATTAAGAATTATGTTTTTTAACTAAATTTTTCAAAACTTTTAAA
ATTTTAACCGAATATTTTATCTTCGGGAAAATTTTCCTTTGAATTTAACT
CAAAATTCAATTTAACTTTTAAAAACAAACAACATTTTCAAAGTCTTTCA
AAAGTCACACTCAAATGTTTACTCACGATGGCTAGCCACAATAGCTAGGC
AACCCTTTTTTAATCTAATGCTGTACGAAAGAAATCTGATTAAATAAGTA
ACCGTTTTTAGGAACTTGACAGAACTATTCAAGAGTCATCCCAAGAAGCA
ACGAATGAAGTAACTATGAGTTCAAATATGTAATTATATTTTGCATACTT
TGGTCCAAGGCTTGGATCAAAATTTGCAGCCCTCCTGTTTTGCCCATATA
GGTCTTTTCAACTCTACTTTGCTCGACCGCAACCTTTACAAGATGATACG
AGAAATCTGATCAAAAACATTTGAAATTAGCTAAGTTCGAGGTTTTTACA
TGTAGAATAATAACCCAATAAGCATAATTAGCTTTCATTTAAATTGGATT
CCCCTCGATGTGACTTATGGAGAGTGCACTGTGCAAATTGTTTTCTATTT
TGATGTGTTTAGATTTTTTTTATAATTACAGACGGATAATGCTGAAGTAT
CCTGTCCAATATGCCTGGATAGCCTAAAGAACCATAATTATATTTACAGC
ATGGAATGTGGGCATTGTGCAGGTTCTTCGTAAGTATTATCATTAACATT
TAGACCAGATTCAGAGTACTTCCAATGAAACTGATTTTAAAAGTTCCGAA
ATTCGTGACAGGGCCCAAGGGACCAATTTCACATCTTGTCAGGTGTGCAC
AGCCAAGTGTCCGCTGTCAATTCCTTAGGACAACAATCTCCAGAGTGGAA
TTTTTGTTCATTTGGAAGTAGTTTTTAGCAATAGGAGGTGCTGTAAATCG
TCACACTATTGAAATATTCAATATATTTAAATATTGTTGTTTCAGATGTC
TCAAAAAATGGCTAAAGGAAAACAAAAAGTGTCCTCTATGTTCCAAGACG
GTCGATTTCAAAGAACTGCGCAAAGTATACGTGAAATAAAAATGCTAACT
CGTAAAAAGTTAGTGAAGTATCCCACATATATTCTTCATGTTCTTACTTA
CTGTACTTTGTTCTTATGGAAAATGTGTATATTGTAAGTATTGTAAATAG
GATCAGTCCAGTTAATTTTGTCACTGGATTTTTTTATAAAGGGATGAAAG
TCATTGAATTATCAGGCAGATTGATAATTGTTATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043138XLOC_043138Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069219-exon-scaffold_496-1575043694:1772..1888TCONS_00069219-exon-scaffold_496-1575043694:1772..1888Clytia hemisphaericaexon
TCONS_00069219-exon-scaffold_496-1575043694:1230..1277TCONS_00069219-exon-scaffold_496-1575043694:1230..1277Clytia hemisphaericaexon
TCONS_00069219-exon-scaffold_496-1575043694:810..907TCONS_00069219-exon-scaffold_496-1575043694:810..907Clytia hemisphaericaexon
TCONS_00069219-exon-scaffold_496-1575043694:252..543TCONS_00069219-exon-scaffold_496-1575043694:252..543Clytia hemisphaericaexon
TCONS_00069219-exon-scaffold_496-1510915933:1772..1888TCONS_00069219-exon-scaffold_496-1510915933:1772..1888Clytia hemisphaericaexon
TCONS_00069219-exon-scaffold_496-1510915933:1230..1277TCONS_00069219-exon-scaffold_496-1510915933:1230..1277Clytia hemisphaericaexon
TCONS_00069219-exon-scaffold_496-1510915933:810..907TCONS_00069219-exon-scaffold_496-1510915933:810..907Clytia hemisphaericaexon
TCONS_00069219-exon-scaffold_496-1510915933:252..543TCONS_00069219-exon-scaffold_496-1510915933:252..543Clytia hemisphaericaexon
TCONS_00069219-exon-scaffold_496-1491911889:1772..1888TCONS_00069219-exon-scaffold_496-1491911889:1772..1888Clytia hemisphaericaexon
TCONS_00069219-exon-scaffold_496-1491911889:1230..1277TCONS_00069219-exon-scaffold_496-1491911889:1230..1277Clytia hemisphaericaexon
TCONS_00069219-exon-scaffold_496-1491911889:810..907TCONS_00069219-exon-scaffold_496-1491911889:810..907Clytia hemisphaericaexon
TCONS_00069219-exon-scaffold_496-1491911889:252..543TCONS_00069219-exon-scaffold_496-1491911889:252..543Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:252..1888 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.205074	0	0	0.113583	2.4246	2.57576	6.28473	4.71726	8.90731	8.51762	8.55392	8.7731	1.58743	2.69117	1.0913	0.249932	3.80484	4.58854	0.217998	0	7.16578	7.02278	0.940534	1.24943	1.21725	1.76854	0.140598	0.750252	1.4795	0.989008
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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