TCONS_00069182 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069182
Unique NameTCONS_00069182
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069182 ID=TCONS_00069182|Name=TCONS_00069182|organism=Clytia hemisphaerica|type=transcript|length=1505bp
CGTTAGACAACGAAAAACTGAAGACTGTatattgtattttctttttaaaa
cgGCGCTGTACAGGAGTAAATTTCTGACATACAGAAGGACTCAAAAGTGA
ATTTATCCACGAGCTACTAGAATCAAGCTAGTTAAACTGGTAAAAATATA
CATTTGAAATCATCTATGTGATTTTACATTCAAAGTGAAACTTAAACCAC
GAACATTTACAAACTACTACGTGATCAAGTCCAGTCAAAAACATGGAGGA
AGGAAGAAAATTTATGTATTATACAATCAGTGAGCCTTTTAACATAATGC
TTATGGTCCTTGGGATTCTTATGGTGATTTTAAACGTCTTGGAAATTCGA
TTTATCGTTAAAGgatcgaaaaataaaaagctCCACAAATCACAAATCTA
TCTTTCGAATCTTGCATTGTCTGATGTCATGTTCGGAGTTAGTATTATAC
TTCTGTCTGCTGTTTCAGAATATACAAAGAATGTTTCCAATCGTGCAAAC
TGGTTACGTGCAATGAATCTCTATTTAATTCTTGTCGGCAtaagaataac
ttttacaatGTCGATATTTAGTTTAATAGCATTAACTCTGGATAGGCTTC
TGGgaattttgaaacctttttatcatcgaaaaattgaaaacaagcaCTGT
GTTTGCATCTGTGTTTTGACTTGGGTTGTAGCGATTACTATGGGCTCATT
AAATATCGTTTTGATGGCTACAGCGTCACATCACAGCATTGACATGATTT
TTCGCAGATTCATTGACTCACAAAATACTACAGAAGTAATACAGCATGCC
ACCTTAGATATCTATGGTTATGCTTATGAATTCAAAATTCTCAGAACAGA
AATTGTAAGTTTAACAAAGCCATACCCGGACTGGCTCAACAACGTTTTAG
AGAAAATTAATTCTACCCATAATAGGTTTTTAAAAAGCCCTTACGGTCTT
CGTTCAATGGAACAAGGAGATTTTGAATATTCATTTATTCAAGTTACGAT
TTACACCaccgtttttattttgttgtcagTTTATACATTGATATGGTATC
GATTGCGGAAAAGTCATCTATTTATTCGAGGAAGCGCAAAAACCCCAGAA
ATCGTTGAAAACGttcaaaaaacaaaggaaaagaaatttgtcaaattatC
AATCgctattgttttagcttttgctTTTTGTTGGTTGCCATTGGCGATTC
ATTCTACCATTTTCTTTTATTGGGGAAAGTACAAAGGATATGATGTGACC
TCAGAGGAGTCATATGTAATGATGCCAATATTATTAAATTCGATAATTAA
TCCATTTCTATACTTCAAAATGATGAGCAAAGTGGGTTTTTGcacaaagt
ttaaaaatagaaatagacGATTGAGAGCACCGAGTAACGTTTCGAACACA
ACTGAGTTCTGAGTTTCACACGTTCACTACCGACCGTATtttcgaaattg
aaattttgacctcTTGGAGATTTATCAAAAGTTTAACTTTCAGAGGCTCT
TGTAG
Run BLAST on NCBI

protein sequence of TCONS_00069182-protein

>TCONS_00069182-protein ID=TCONS_00069182-protein|Name=TCONS_00069182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=389bp
MEEGRKFMYYTISEPFNIMLMVLGILMVILNVLEIRFIVKGSKNKKLHKS
QIYLSNLALSDVMFGVSIILLSAVSEYTKNVSNRANWLRAMNLYLILVGI
RITFTMSIFSLIALTLDRLLGILKPFYHRKIENKHCVCICVLTWVVAITM
GSLNIVLMATASHHSIDMIFRRFIDSQNTTEVIQHATLDIYGYAYEFKIL
RTEIVSLTKPYPDWLNNVLEKINSTHNRFLKSPYGLRSMEQGDFEYSFIQ
VTIYTTVFILLSVYTLIWYRLRKSHLFIRGSAKTPEIVENVQKTKEKKFV
KLSIAIVLAFAFCWLPLAIHSTIFFYWGKYKGYDVTSEESYVMMPILLNS
IINPFLYFKMMSKVGFCTKFKNRNRRLRAPSNVSNTTEF
Run BLAST on NCBI

transcript from alignment at scaffold_496:66106..68093+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069182 ID=TCONS_00069182|Name=TCONS_00069182|organism=Clytia hemisphaerica|type=transcript|length=1988bp|location=Sequence derived from alignment at scaffold_496:66106..68093+ (Clytia hemisphaerica)
CGTTAGACAACGAAAAACTGAAGACTGTatattgtattttctttttaaaa
cggTTAGTTTGATGATGATCAACCCAGAAAAAGATTGTGAATCTATTAGT
TCAAAACGACTTTTTTGGTTTGTTCTTTTTCATATATAACAATGgtattt
ccaaagttttgcATTGATTGAACGAGCTCTATTTGTACTCCACAGCCTTG
ATAAAAGTGAGTTTATGAACTCCTAGTACTATTAGATACATTTCAAGCTG
AATTAAACAAAAAGGGTTAATTTTAGATACATACAAAGttcaagaaattt
tgataaattagtTTTATAAGACTGGTTACAGGTCGATCCAtgttttttcc
cgattttttgcccgtagaacaacgaatttaatttgttttctcCTTGTTGT
CGAAGATTAAAGAAAAATGTAGATTAAAATTGTGATTTTGATAGGAATGA
AATAGGAAAACTGGAGAATGGAGattctaatttttttactttataaatTA
GCGTATTTTTAATGTTCATATACTACTCTTTCTAGGCGCTGTACAGGAGT
AAATTTCTGACATACAGAAGGACTCAAAAGTGAATTTATCCACGAGCTAC
TAGAATCAAGCTAGTTAAACTGGTAAAAATATACATTTGAAATCATCTAT
GTGATTTTACATTCAAAGTGAAACTTAAACCACGAACATTTACAAACTAC
TACGTGATCAAGTCCAGTCAAAAACATGGAGGAAGGAAGAAAATTTATGT
ATTATACAATCAGTGAGCCTTTTAACATAATGCTTATGGTCCTTGGGATT
CTTATGGTGATTTTAAACGTCTTGGAAATTCGATTTATCGTTAAAGgatc
gaaaaataaaaagctCCACAAATCACAAATCTATCTTTCGAATCTTGCAT
TGTCTGATGTCATGTTCGGAGTTAGTATTATACTTCTGTCTGCTGTTTCA
GAATATACAAAGAATGTTTCCAATCGTGCAAACTGGTTACGTGCAATGAA
TCTCTATTTAATTCTTGTCGGCAtaagaataacttttacaatGTCGATAT
TTAGTTTAATAGCATTAACTCTGGATAGGCTTCTGGgaattttgaaacct
ttttatcatcgaaaaattgaaaacaagcaCTGTGTTTGCATCTGTGTTTT
GACTTGGGTTGTAGCGATTACTATGGGCTCATTAAATATCGTTTTGATGG
CTACAGCGTCACATCACAGCATTGACATGATTTTTCGCAGATTCATTGAC
TCACAAAATACTACAGAAGTAATACAGCATGCCACCTTAGATATCTATGG
TTATGCTTATGAATTCAAAATTCTCAGAACAGAAATTGTAAGTTTAACAA
AGCCATACCCGGACTGGCTCAACAACGTTTTAGAGAAAATTAATTCTACC
CATAATAGGTTTTTAAAAAGCCCTTACGGTCTTCGTTCAATGGAACAAGG
AGATTTTGAATATTCATTTATTCAAGTTACGATTTACACCaccgttttta
ttttgttgtcagTTTATACATTGATATGGTATCGATTGCGGAAAAGTCAT
CTATTTATTCGAGGAAGCGCAAAAACCCCAGAAATCGTTGAAAACGttca
aaaaacaaaggaaaagaaatttgtcaaattatCAATCgctattgttttag
cttttgctTTTTGTTGGTTGCCATTGGCGATTCATTCTACCATTTTCTTT
TATTGGGGAAAGTACAAAGGATATGATGTGACCTCAGAGGAGTCATATGT
AATGATGCCAATATTATTAAATTCGATAATTAATCCATTTCTATACTTCA
AAATGATGAGCAAAGTGGGTTTTTGcacaaagtttaaaaatagaaataga
cGATTGAGAGCACCGAGTAACGTTTCGAACACAACTGAGTTCTGAGTTTC
ACACGTTCACTACCGACCGTATtttcgaaattgaaattttgacctcTTGG
AGATTTATCAAAAGTTTAACTTTCAGAGGCTCTTGTAG

Coding sequence (CDS) from alignment at scaffold_496:66106..68093+

>TCONS_00069182 ID=TCONS_00069182|Name=TCONS_00069182|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_496:66106..68093+ (Clytia hemisphaerica)
ATGGAGGAAGGAAGAAAATTTATGTATTATACAATCAGTGAGCCTTTTAA
CATAATGCTTATGGTCCTTGGGATTCTTATGGTGATTTTAAACGTCTTGG
AAATTCGATTTATCGTTAAAGgatcgaaaaataaaaagctCCACAAATCA
CAAATCTATCTTTCGAATCTTGCATTGTCTGATGTCATGTTCGGAGTTAG
TATTATACTTCTGTCTGCTGTTTCAGAATATACAAAGAATGTTTCCAATC
GTGCAAACTGGTTACGTGCAATGAATCTCTATTTAATTCTTGTCGGCAta
agaataacttttacaatGTCGATATTTAGTTTAATAGCATTAACTCTGGA
TAGGCTTCTGGgaattttgaaacctttttatcatcgaaaaattgaaaaca
agcaCTGTGTTTGCATCTGTGTTTTGACTTGGGTTGTAGCGATTACTATG
GGCTCATTAAATATCGTTTTGATGGCTACAGCGTCACATCACAGCATTGA
CATGATTTTTCGCAGATTCATTGACTCACAAAATACTACAGAAGTAATAC
AGCATGCCACCTTAGATATCTATGGTTATGCTTATGAATTCAAAATTCTC
AGAACAGAAATTGTAAGTTTAACAAAGCCATACCCGGACTGGCTCAACAA
CGTTTTAGAGAAAATTAATTCTACCCATAATAGGTTTTTAAAAAGCCCTT
ACGGTCTTCGTTCAATGGAACAAGGAGATTTTGAATATTCATTTATTCAA
GTTACGATTTACACCaccgtttttattttgttgtcagTTTATACATTGAT
ATGGTATCGATTGCGGAAAAGTCATCTATTTATTCGAGGAAGCGCAAAAA
CCCCAGAAATCGTTGAAAACGttcaaaaaacaaaggaaaagaaatttgtc
aaattatCAATCgctattgttttagcttttgctTTTTGTTGGTTGCCATT
GGCGATTCATTCTACCATTTTCTTTTATTGGGGAAAGTACAAAGGATATG
ATGTGACCTCAGAGGAGTCATATGTAATGATGCCAATATTATTAAATTCG
ATAATTAATCCATTTCTATACTTCAAAATGATGAGCAAAGTGGGTTTTTG
cacaaagtttaaaaatagaaatagacGATTGAGAGCACCGAGTAACGTTT
CGAACACAACTGAGTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043123XLOC_043123Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069182-proteinTCONS_00069182-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069182-exon-scaffold_496-1491911889:66106..66157TCONS_00069182-exon-scaffold_496-1491911889:66106..66157Clytia hemisphaericaexon
TCONS_00069182-exon-scaffold_496-1510915933:66106..66157TCONS_00069182-exon-scaffold_496-1510915933:66106..66157Clytia hemisphaericaexon
TCONS_00069182-exon-scaffold_496-1575043694:66106..66157TCONS_00069182-exon-scaffold_496-1575043694:66106..66157Clytia hemisphaericaexon
TCONS_00069182-exon-scaffold_496-1491911889:66641..68093TCONS_00069182-exon-scaffold_496-1491911889:66641..68093Clytia hemisphaericaexon
TCONS_00069182-exon-scaffold_496-1510915933:66641..68093TCONS_00069182-exon-scaffold_496-1510915933:66641..68093Clytia hemisphaericaexon
TCONS_00069182-exon-scaffold_496-1575043694:66641..68093TCONS_00069182-exon-scaffold_496-1575043694:66641..68093Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:66106..68093 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0738329	0.0583437	0	0	0	0.0285737	0	0	0.654041	0.534994	0	0	0	0.0815579	2.93035	2.3957	0.147442	0.0909863	0.0381517	0.0691234	0.0587822	0.209847	0.0375363	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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