TCONS_00069335 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069335
Unique NameTCONS_00069335
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1637

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069335 ID=TCONS_00069335|Name=TCONS_00069335|organism=Clytia hemisphaerica|type=transcript|length=1637bp
tttaaggggcTAACATAAAGTAAGAAATTATCAAACTATAAAAAAGCTCA
ACCATAAATTACCACCCACCATGTCAATATACCGCAATGTGATCTGGTTC
ACCAAAGGCATTCGTGAATATTGTAAATCTGGATATGAACATGCTGCCAA
GACTTTCGAATCTTTAGAAGGCGTTCGATTGGAAGGACGATCTTATATGA
TCACTGGTGCTAATAGTGGAATCGGTAAAGAGGCAGCATTGAAGATTGCC
AGTATGGGAGGAATAGTTCATTTGGTTTGTCGAAATGAACAACGTGGTCA
AGAAGCactgaaagaaataaaaacacaaTCTGGTAGTGAAGAAGTGCATC
TTCATCTACTTGATATGTCTCAATCAAGAGAAGTCCATAAATTCACCAAA
GATTTCACTGAATCTGGTCGTCCTTTGAATGTACTCATAAATAACGCAGG
TTGTATGGTTAATACAAGAGAATTGAACGAAGAAGGAGTTGAGAAGAATT
TTGCTACCAATACACTTGGCACCTACCTCCTAACTACAGGCTTGATTAAT
CATCTACAGAACTCAGAATCTCCTCAAGTTATCACAGTCTCGTCAGGTGG
TATGTTAGTAAACAAACTGGATTCTAGTGATTTCAACTTCGAACAAATGA
ACCCTTTCGATGGCACAATGGCTTATTCTCAAAACAAACGGCAACAAATT
GAAATGACTGATTATTGGGCCGTGCAATATCCAAACATACAATTTACAAC
CATGCATCCAGGTTGGGCCGACACTCCTGCTGTTCGCAATTCCATGCCAG
ATTTTtacgaaaaaatgaaaaatagactTCGGACAACGGAACAAGGTGCG
GACACAATTGTTTGGCTTGCCACTTCATCAACCGCCCGTAAAGCGCCCTC
GGGTGGATTTTATCAAGACAGAACACCAGTTTCTAAACATTTACCGTTAG
CTTGGACTAAATCATCAGAAAAAGAGAGGAGGGTTTTTACGGAAAAATTA
GAGACATTGGCTTCAAAATTTAGGTCATAGTTAAAAAGACTGATCGTGAT
ATTATCAAAGTCAGATAAAATGTAGCCTAGGGTCAACTCTTGAAGCTTTC
TATAGACTTTATGACACTTGAGTTGCCTGATACATGGTAATTCtccaata
cacgggttgcaaaattatatcaatgcagtcaaaatatgtgattactcaaa
aatattCGCGTGATTTTATTCGCATGCTTTTACCACTTTAAGCTGATAGC
TTTATAAGTGTTACCACTTAAAGCTGATAGCTTTAtaagtgtcaataaat
tcgaaccaatcagaaataaatgtcatgtaaaaagcacataaaaaagaaca
aagcgtgatttgtcttcagactttaatttagCAACCAATGTATTTAGagt
tttgcttaggcggactgtaagaCAGTTTTTTGTCtcctaaaatatttcaa
attgctCGGTTATTGGCTTATGTTTATTTAGGCTAATATTTAATATAATC
AATATAACAGAAACCTTAggatgaaaataaaatagtagCCTCCAAagtat
atgaaatattttacgatGACAAACTATATATTATAGATATTAAATTTCAT
TGATTAATGCcattgaattttgacttttagAATAATT
Run BLAST on NCBI

transcript from alignment at scaffold_498:244390..249306+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069335 ID=TCONS_00069335|Name=TCONS_00069335|organism=Clytia hemisphaerica|type=transcript|length=4917bp|location=Sequence derived from alignment at scaffold_498:244390..249306+ (Clytia hemisphaerica)
tttaaggggcTAACATAAAGTAAGAAATTATCAAACTATAAAAAAGCTCA
ACCATAAATTACCACCCACCATGTCAATATACCGCAATGTGATCTGGTTC
ACCAAAGGCATTCGTGAATATTGTAAATCTGGATATGAACATGCTGCCAA
GACTTTCGAATCTTTAGAAGGCGTTCGATTGGAAGGACGATCTTATATGA
TCACTGGTGCTAATAGTGGAATCGGTATGAATGTTATTCATGATATCCAT
GACGTAttgttttatacggaaacatCCGAAAAAGACCGGGTATTGCCACT
AATTAGTTATTTAAACCATAAAACTTGTGGCAAACTCCTGGTCTTTTTAG
GTGCTTTCGTATAAGatattacgtcatgaatgtCACGAATTGTATCTTTG
ATGCCAGGTCAGCTCAAAAATTGGACACAATTTTGTCACCCAGGCTACTA
GCTATTAAACTCTTCCCTTTCGAACTCACAGACATGACATTTTCAGGATT
ATTATCTATTAGCAGGATTAAAATTTGACGGTATCTCGATAATGCTCGAT
AATCAGGTTCCTTAAACCAGTTTCAAAGCTTCAACTAAGGATTCATCAGG
ATTCATAAGAGGTTTCTATTCAAACCACTCAAttcgtgatatgcaccatt
gtaatATCTNGATTCATCAGGATTCATAAGAGGTTTCTATTCAAttcgtg
atatgcaccattgtaatATCTTccgacattacatcacggacccgacagct
gattggttgcaagtgacgtaaaatcagtcaatacgtcaatttcaaccaat
cagctgttgggtttgTGGAAGATATTGCAGCGGTGCATACCACAAATACA
CAAtgattaaaagtttttatttggtttatttaGGTAAAGAGGCAGCATTG
AAGATTGCCAGTATGGGAGGAATAGTTCATTTGGTTTGTCGAAATGAACA
ACGTGGTCAAGAAGCactgaaagaaataaaaacacaaTCTGGTAAATTAT
ATCATGCATGTTTCTTTTGTCCAATCAATTTTTTAGGCCCGGCcacatga
tgacgtcatctggcaggtgccAGGTAACAACATtaggtgttactgtttaa
aattcaGTTTTACCTACGAAGGACTATCTGTGTCAAATTTTGAGCTTTAA
TAGCTATCTGAAGTATAGTTACATTTTATATGCTAGCAAACAAACCTTAT
TTGGGAAAAACTCGGGGTTTTAATTTGCAAAGGAAAAACTTTCGTCACCT
AGAGACAATTTCGTTTCTACTTCTCGGCCGAATTTCTCTAAAAATGCATC
ACTCTTTCCCCAGACGAAATtcacaatttagtcactttaaCCTGgctaaa
ttgttcttaacattgtTTCCGTTGTTTCCTTAGCAAGCCCGAAAATAAAT
CTCGTAATTCGACGTTTAGAGCAATAACTTCGGTTGATACAGACATGAAG
AATTTAAAAGGGTAATCACAAAAAAACTCTCGCTACAAAATAGTATACCT
TCTGTTCACGCTTTTATCTTAGTTTCTCATTACTAGCtatttattacttt
atttttacCATATTCATTTATCCAGGTAGTGAACAAGTGCATCTTCATCN
tatttattactttatttttacCATATTCATTTATCCAGGTAGTGAAGAAG
TGCATCTTCATCTACTTGATATGTCTCAATCAAGAGAAGTCCATAAATTC
ACCAAAGATTTCACTGAATCTGGTCGTCCTTTGAATGTACTCATAAATAA
CGCAGGTTCgtatctacacgttttttataaaaacaaactatataagaaca
taacgtTTCGATGGcccaaaagttaagaacaagttaaaaacattttaagg
cttaatggactctaaaacacctgatttgatacagtgccgtaggaagcagt
TTCTTATTGGGGNtatttattactttatttttacCATATTCATTTATCCA
GGTAGTGAAGAAGTGCATCTTCATCTACTTGATATGTCTCAATCAAGAGA
AGTCCATAAATTCACCAAAGATTTCACTGAATCTGGTCGTCCTTTGAATG
TACTCATAAACAACGCAGGTTAgtatctacacgttttttataagaacaaa
ctatataagaacataacgtTTCGATGGcccaaaagttaagaacaagttaa
aaacattttaaggcttcgtggactctaaaacacctgatttgttaagaaag
tggacaaaaaatactcaaaaatgacGGGATATTGAATATGGTCTACACAT
TATAAGTTAAGTacaatttaaggctttgtggactttaGAACACCGAATTT
CATAGGCAAactgacaaaaatattcaaaaaatggcgaaaataagaacatg
ctaaaaagcttaaggcttaaaactcaaaaagttaagaacatccaaggctt
caaaatttttagatcttcttataaaagaaatttcTATATTTATTTTACCA
GGTTGTATGGTTAATACAAGAGAATTGAACGAAGAAGGAGTTGAGAAGAA
TTTTGCTACCAATACACTTGGCACCTACCTCCTAACTACAGGCTTGATTA
ATCATCTACAGAACTCAGAATCTCCTCAAGTTATCACAGTCTCGTCAGGT
TGGTAAAGTTTATCTGACTTGTAAGATTTCTTGAAATAGTGAGAGCCACT
ATGTTCTAAGAACATCCTCCGTGTGAACagacttgttaaaagcaaactaa
ctttgttaaatgatcaattaggtccataagatcacaaaaacgagtggtaA
GAAAAAtcttgaccattttgctggtcctcatgtgacgtcatcatttttgc
tggggcttgaaaatgaaagtgaaaattagaagctcataTATGGTTCAAAT
GAAAGATCAGTTTCCTAAACaagtctgtgcacacgaagaacATTGTAGCT
CTCACTAAAATATTTCCCGGGGGAGAAGTTACTTGTCCTGAGGGTACTAG
TGTTAGGGaatgacgggtatgtgcggacgggacttCCGAAAAACGACCCT
taagttttgtaaaaaaaagtgaTAGAGATAATTGTCGAAATATTTCCTAA
CCTAAGAAGAGACTTTACATGGCTTTTGTAAAATTCCTTGAGCTAAAGCT
aaaagaacaagctaagaacatttttacgcTTTACACTCAATAGCATACCG
AAGTGAATCTAAAAAAAggcattgatttttctgtttgaccgaaattcaat
cccatcaccctttgcgttgattacactcaattacaaagaaaaagttataa
cttttacgacttttgaattaatacgaaaaggattgtggtattaaatttcg
gtcaaatgagaaAAGTAATAATCATGACGTTTGCTTAACGAAGCGCTATT
TCAAAGGAAATTGCACAaacattctcacaaaatggcaaaaataagaacgt
tttaagaacatttttaagcttaaaactcaaaagattttggatgttcttat
aaaaacctgTATTTTAACGTAAAAAACGATTGAAGTTTCTCGTTTTAAAG
ATTCTTCTTGTCTACCTTCATGCAGGTGGTATGTTAGTAAACAAACTGGA
TTCTAGTGATTTCAACTTCGAACAAATGAACCCTTTCGATGGCACAATGG
CTTATTCTCAAAACAAACGGCAACAAATTGAAATGACTGATTATTGGGCC
GTGCAATATCCAAACATACAATTTACAACCATGCATCCAGGTACAAAACA
cttgtttttaatttaaattttgtttcagGAATGTACCCTCTTAAAGGAAG
AGATTTTGTCAGGAAAAAAGTAAGTTTCAAATTTCCAGGGGATTTTTAAA
AGAAGGGCGCTTTTTTCTCAAAGTAGAAGGTTTGGATTGAATTATAATCA
AAGAAAACTCTAGGTCTTTCTTCTAGGAAAAGAAACGTATAATCTTTCTT
ACGGTAGAACCCTATTTCAACCTTCACCTAACGATAATCGGACAATAGAT
GGGCCTTTTTTGGACGTTATATGCCTGCTGAAGAGCTTAAAGATGGAATA
AAATAAGACACAAGAAGGCAAATCGCAATTCAATATTTTAGGTTGGGCCG
ACACTCCTGCTGTTCGCAATTCCATGCCAGATTTTtacgaaaaaatgaaa
aatagactTCGGACAACGGAACAAGGTGCGGACACAATTGTTTGGCTTGC
CACTTCATCAACCGCCCGTAAAGCGCCCTCGGGTGGATTTTATCAAGACA
GAACACCAGTTTCTAAACATTTACCGTTAGCTTGGACTAAATCATCAGAA
AAAGAGAGGAGGGTTTTTACGGAAAAATTAGAGACATTGGCTTCAAAATT
TAGGTCATAGTTAAAAAGACTGATCGTGATATTATCAAAGTCAGATAAAA
TGTAGCCTAGGGTCAACTCTTGAAGCTTTCTATAGACTTTATGACACTTG
AGTTGCCTGATACATGGTAATTCtccaatacacgggttgcaaaattatat
caatgcagtcaaaatatgtgattactcaaaaatattCGCGTGATTTTATT
CGCATGCTTTTACCACTTTAAGCTGATAGCTTTATAAGTGTTACCACTTA
AAGCTGATAGCTTTAtaagtgtcaataaattcgaaccaatcagaaataaa
tgtcatgtaaaaagcacataaaaaagaacaaagcgtgatttgtcttcaga
ctttaatttagCAACCAATGTATTTAGagttttgcttaggcggactgtaa
gaCAGTTTTTTGTCtcctaaaatatttcaaattgctCGGTTATTGGCTTA
TGTTTATTTAGGCTAATATTTAATATAATCAATATAACAGAAACCTTAgg
atgaaaataaaatagtagCCTCCAAagtatatgaaatattttacgatGAC
AAACTATATATTATAGATATTAAATTTCATTGATTAATGCcattgaattt
tgacttttagAATAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043210XLOC_043210Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069335-exon-scaffold_498-1491911889:244390..244613TCONS_00069335-exon-scaffold_498-1491911889:244390..244613Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1510915933:244390..244613TCONS_00069335-exon-scaffold_498-1510915933:244390..244613Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1575043694:244390..244613TCONS_00069335-exon-scaffold_498-1575043694:244390..244613Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1491911889:245273..245380TCONS_00069335-exon-scaffold_498-1491911889:245273..245380Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1510915933:245273..245380TCONS_00069335-exon-scaffold_498-1510915933:245273..245380Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1575043694:245273..245380TCONS_00069335-exon-scaffold_498-1575043694:245273..245380Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1491911889:246028..246144TCONS_00069335-exon-scaffold_498-1491911889:246028..246144Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1510915933:246028..246144TCONS_00069335-exon-scaffold_498-1510915933:246028..246144Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1575043694:246028..246144TCONS_00069335-exon-scaffold_498-1575043694:246028..246144Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1491911889:246841..246987TCONS_00069335-exon-scaffold_498-1491911889:246841..246987Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1510915933:246841..246987TCONS_00069335-exon-scaffold_498-1510915933:246841..246987Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1575043694:246841..246987TCONS_00069335-exon-scaffold_498-1575043694:246841..246987Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1491911889:247915..248079TCONS_00069335-exon-scaffold_498-1491911889:247915..248079Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1510915933:247915..248079TCONS_00069335-exon-scaffold_498-1510915933:247915..248079Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1575043694:247915..248079TCONS_00069335-exon-scaffold_498-1575043694:247915..248079Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1491911889:248431..249306TCONS_00069335-exon-scaffold_498-1491911889:248431..249306Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1510915933:248431..249306TCONS_00069335-exon-scaffold_498-1510915933:248431..249306Clytia hemisphaericaexon
TCONS_00069335-exon-scaffold_498-1575043694:248431..249306TCONS_00069335-exon-scaffold_498-1575043694:248431..249306Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_498supercontigscaffold_498:244390..249306 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.7709	32.0796	20.1354	19.3882	8.75222	5.8272	11.1403	12.0872	17.3149	14.5679	15.7764	12.1079	7.56593	5.50715	18.7867	20.4139	19.8535	22.8546	14.952	15.9747	28.8341	26.9024	23.5096	26.4837	18.1833	23.404	24.4366	23.543	30.2496	22.8716
Blast
[Close]
BLAST of TCONS_00069335 vs. Swiss-Prot (Human)
Match: DHR12 (Dehydrogenase/reductase SDR family member 12 OS=Homo sapiens GN=DHRS12 PE=2 SV=2)

HSP 1 Score: 329.717 bits (844), Expect = 3.964e-108
Identity = 178/320 (55.62%), Postives = 232/320 (72.50%), Query Frame = 2 
Query:   71 MSIYRNVIWFTKGIREYCKSGYEHAAKTF--ESLEGVRLEGRSYMITGANSGIGKEAALKIASMGGIVHLVCRNEQRGQEALKEIKTQSGSEEVHLHLLDMSQSREVHKFTKDFTESGRPLNVLINNAGCMVNTRELNEEGVEKNFATNXXXXXXXXXXXINHLQNSESPQVITVSSGGMLVNKLDSSDFNFEQMNPFDGTMAYSQNKRQQIEMTDYWAVQYPNIQFTTMHPGWADTPAVRNSMPDFYEKMKNRLRTTEQGADTIVWLATSSTARKAPSGGFYQDRTPVSKHLPLAWTKSSEKERRVFTEKLETLASKFR 1024
            MS+YR+V+WF KG+REY KSGYE A K F    LE V++ GR +++TG NSGIGK  AL+IA  GG VHLVCR++   ++A  EI  +SG++ + LH++D+S  +++ KF ++F +  + L+VLINNAGCMVN REL E+G+EKNFA NTLG Y+LTTGLI  L+    P+VITVSSGGMLV KL+++D   E+  PFDGTM Y+QNKRQQ+ +T+ WA  +P I F++MHPGWADTP VR +MP F+ +  +RLR+  QGADT++WLA SS A   PSG F+QDR PVS HLPLA   SS  E     E LE LA  F+
Sbjct:    1 MSLYRSVVWFAKGLREYTKSGYESACKDFVPHDLE-VQIPGRVFLVTGGNSGIGKATALEIAKRGGTVHLVCRDQAPAEDARGEIIRESGNQNIFLHIVDLSDPKQIWKFVENFKQEHK-LHVLINNAGCMVNKRELTEDGLEKNFAANTLGVYILTTGLIPVLEKEHDPRVITVSSGGMLVQKLNTNDLQSER-TPFDGTMVYAQNKRQQVVLTERWAQGHPAIHFSSMHPGWADTPGVRQAMPGFHARFGDRLRSEAQGADTMLWLALSSAAAAQPSGRFFQDRKPVSTHLPLATASSSPAEEEKLIEILEQLAQTFK 317
The following BLAST results are available for this feature:
BLAST of TCONS_00069335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHR123.964e-10855.63Dehydrogenase/reductase SDR family member 12 OS=Ho... [more]
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