TCONS_00069446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069446
Unique NameTCONS_00069446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069446 ID=TCONS_00069446|Name=TCONS_00069446|organism=Clytia hemisphaerica|type=transcript|length=270bp
ctggcccttattacgccagcgGCGAAAAATAACGCCAACAAGGATGGGAG
TAAAAATACCGCTAAGGTAAATAACAGCTTCCTGTAGTAGTCACGTGACT
TATGGTCTCTCACCataccagagattgaaaaatcataatgacagaataaa
aaaatatttctctctTACCAATCGCGGTCAGTATGTTTCAAATAGTCCGA
ACCAAAATACTCGAAAATATCTTTCTCACTTGAGATAGAAATCGATGTAC
CTTTGTTCACTTTCTCACCC
Run BLAST on NCBI

transcript from alignment at scaffold_5:217512..217781

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069446 ID=TCONS_00069446|Name=TCONS_00069446|organism=Clytia hemisphaerica|type=transcript|length=270bp|location=Sequence derived from alignment at scaffold_5:217512..217781 (Clytia hemisphaerica)
GGGTGAGAAAGTGAACAAAGGTACATCGATTTCTATCTCAAGTGAGAAAG
ATATTTTCGAGTATTTTGGTTCGGACTATTTGAAACATACTGACCGCGAT
TGGTAagagagaaatatttttttattctgtcattatgatttttcaatctc
tggtatGGTGAGAGACCATAAGTCACGTGACTACTACAGGAAGCTGTTAT
TTACCTTAGCGGTATTTTTACTCCCATCCTTGTTGGCGTTATTTTTCGCc
gctggcgtaataagggccag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043281XLOC_043281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069446-exon-scaffold_5-1491911889:217512..217781TCONS_00069446-exon-scaffold_5-1491911889:217512..217781Clytia hemisphaericaexon
TCONS_00069446-exon-scaffold_5-1510915933:217512..217781TCONS_00069446-exon-scaffold_5-1510915933:217512..217781Clytia hemisphaericaexon
TCONS_00069446-exon-scaffold_5-1575043694:217512..217781TCONS_00069446-exon-scaffold_5-1575043694:217512..217781Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:217512..217781 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.70018	1.65794	19.3812	28.6355	34.3918	35.028	24.0443	15.0067	3.92147	1.77464	9.76089	3.59144	2.26147	2.34856	5.79251	3.54835	1.70176	7.12593	6.02443	6.81449	2.28938	3.81345	2.05917	1.37693	9.12703	8.6887	4.66257	0	3.09855	6.22282
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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