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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069604 ID=TCONS_00069604|Name=TCONS_00069604|organism=Clytia hemisphaerica|type=transcript|length=6765bpRun BLAST on NCBI transcript from alignment at scaffold_502:184821..204869- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069604 ID=TCONS_00069604|Name=TCONS_00069604|organism=Clytia hemisphaerica|type=transcript|length=20049bp|location=Sequence derived from alignment at scaffold_502:184821..204869- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00069604 vs. Swiss-Prot (Human)
Match: ATRX (Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=5) HSP 1 Score: 429.483 bits (1103), Expect = 3.437e-121 Identity = 221/441 (50.11%), Postives = 302/441 (68.48%), Query Frame = 3
Query: 2925 PTKGRKKIRKIMKDNQLTEETRHAXXXXXXXXXXXXDRTAKDRKEYTKVLEISEG---------EYVLERNKD-KQPLVSVSADINKHLKPHQRKGIQFMYDCCIESINGYKKGDEGGGCLLAHCMGLGKTLQIVSFTSTIEKSENIKMKRFLIVAPLNTVLNWEQEYEKW---LSVEDRMDVYVMSRCNGMKDRVRTLKEWFEDGGALIIGYEMYRNLVNFTFVKGKKMKEQITEYLVDPGPDLVVCDEGHILRNNTSAISIAMNKVKTRRRIVLTGTPLQNNLPEYHVMVDFVKPNLLGTKKEFLNRFANPINNGRCSNSTPRDVRIMKQRCHVLYQLLSGCVQRQDYSVLTPFLPMKREYTIFVRMQPKQTKMYQHYLENFV----YQDAMNKLKGSSLFSDFHCLSRIWCHPWSLHLERLRRLARQK-SPDSMEEFL 4193
P KGRKKIRKI+KD++L ET++A + EE+RR+R+ +R + R++ +V+EI + + VL+ +++ K+PLV V ++ LKPHQ G+QFM+DCC ES+ KK G GC+LAHCMGLGKTLQ+VSF T+ + + L+V PLNT LNW E+EKW L +++++V ++ ++R L+ W EDGG +IIGYEMYRNL VK +K+KE + LVDPGPD VVCDEGHIL+N SA+S AMN +++RRRI+LTGTPLQNNL EYH MV+F+K NLLG+ KEF NRF NPI NG+C++ST DVR+MK+R H+LY++L+GCVQR+DY+ LT FLP K EY + VRM Q K+YQ+YL++ + G+ LF DF LSRIW HPW L L+ + + + DSM+EF+
Sbjct: 1473 PGKGRKKIRKILKDDKLRTETQNALKEEEERRKRIAERERE-REKLREVIEIEDASPTKCPITTKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKS-PGSGCILAHCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQYYLDHLTGVGNNSEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDEDSMDEFI 1911 HSP 2 Score: 323.168 bits (827), Expect = 1.653e-88 Identity = 167/302 (55.30%), Postives = 214/302 (70.86%), Query Frame = 3
Query: 4599 EWYDEFLTQEDETNVELSGKLVIMLEIIANAEVVGDKILVFTQSLASLDLIESALGGGS-----------IGGNQLNWCRGIDYFRMDGSTPVQKRKRWSDTFNDPDNDKCRLFLISTKAGSLGINMVAANRVIIFDCSWNPSHDVQSVFRVFRFGQEKPVYVYRLIAQGTMEEKVYDRQITKLAVASRVVDEMQIERHFTHEEIRELYSFRPEAI-GPNPE------TPQLPKDPLLAEVLQRQHPQYIVRYHEHDLLLANVQNEEMSEEEKQQAWKEYEDEKNMSASRLQY--RQNLPPV 5444
+WY +F+T D +E SGK+V++ EI+ AE +GDK+LVF+QSL SLDLIE L S I + W R IDY+R+DGST Q RK+W++ FND N + RLF+ISTKAGSLGIN+VAANRVIIFD SWNPS+D+QS+FRV+RFGQ KPVYVYR +AQGTME+K+YDRQ+TK +++ RVVD+ Q+ERHFT E+ ELY+F P+ + PN E TP LPKD +LAE+LQ H ++IV YHEHD LL + + EE++EEE++ AW EYE EK R NLPPV
Sbjct: 2000 DWYKDFVTDADAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKKRDTPMLPKDTILAELLQ-IHKEHIVGYHEHDSLLDHKEEEELTEEERKAAWAEYEAEKKGLTMRFNIPTGTNLPPV 2300 HSP 3 Score: 110.923 bits (276), Expect = 7.093e-24 Identity = 51/134 (38.06%), Postives = 82/134 (61.19%), Query Frame = 3
Query: 402 INCTACSXXXXXXXXXX-XXHPRLGVILCKSCLKFINSNDYARDEQGVEEFCTWCGDGGNLVCCDFCEKAYCKHCIKRNLGKPFLKTLLEATEEVKWKCFHCDQSQISVYISQC-SIMMNHVHTYRAHESTIEV 797
++CTAC +++ K +HP L V++CK+C K+ S+D +RD G++E C WC +GGNL+CCDFC A+CK CI RNLG+ L T+++ E +W C+ C + ++ C S+ N + ++ I+V
Sbjct: 169 VSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMD--ENNQWYCYICHPEPLLDLVTACNSVFENLEQLLQQNKKKIKV 300 The following BLAST results are available for this feature:
BLAST of TCONS_00069604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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