|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069625 ID=TCONS_00069625|Name=TCONS_00069625|organism=Clytia hemisphaerica|type=transcript|length=740bp
ATTCGCAAGGTTGAAGAACAGGTAACTAAAGCTATCTCTGCTGCACAAAA
ATTACCAATTCATGCATCAAAGATGTTAGATGGCTCTGCAGAGAAATCGC
TATACAACAAGCTTGTCAAAAGAGATGGGTGAGGAATTCTTTTTTCATAT
CTGAAAATTTATGCTTAATTTGTGGAAATTAAATGCTGTAAGTTTCATTT
GTAAATGTAATAACACCTTCTAAGTAGTTtaacaaaaatatgtttttcct
TTCCATTTACAGTAAAAGCCATTCAGGAAAGCGNGAAAGCTTGTGTGAAA
CCGCTAACGAATGTGAAGAAACTCACAACAAATAAGCtgtttttaattga
ttttgtgAATCCTCATGAAAcagactgatttttttttctcagcagCACCA
ATGAGTAGGACTAATAATAAAACCAAATATGAAATTTAAATactaaaaat
cctgaaaactCGCCCAAAAGTGAAGTATTTTGTCAGCCAAAACTAACTCT
TgttaaatcaaattttcttttcaagggATCTTGGGACAAGGGATTTGGGG
ACAAGGGATTTTGGGACAAGGGATCAGGGGTATCTTtagcatgaaaaata
tttattccttacatttttaataaattttagaATATTGTAAGATTATTTAA
GAAGCAAATTTTATTCTTATTGCATACTTTCTTGTATATATTTCTACTAA
TTATCTTATGCTGCTACTATGTAAAAGATGTATATTGTGA Run BLAST on NCBI transcript from alignment at scaffold_503:73339..75279+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069625 ID=TCONS_00069625|Name=TCONS_00069625|organism=Clytia hemisphaerica|type=transcript|length=1941bp|location=Sequence derived from alignment at scaffold_503:73339..75279+ (Clytia hemisphaerica)
ATTCGCAAGGTTGAAGAACAGGTATGGAATTTTCACTCAAAgtggatttt
tttaaattttgactgCATCTGACTGTCtcaattatttttcatcttttttt
aatGAATGATTGCCTGATTATTTTATCCTCAATCCCAGGTAACTAAAGCT
ATCTCTGCTGCACAAAAATTACCAATTCATGCATCAAAGATGTTAGATGG
CTCTGCAGAGAAATCGCTATACAACAAGCTTGTCAAAAGAGATGGgtgag
gaattttttttttcatatctgAAAATTTATGCTTAATTTGTGGAAATTAA
ATGCTGTAAGTTTCATTTGTAAATGTAATAACACCTTTTAAGTAGTTtaa
caaaaatatgtttttcctTTCCATTTACAGTAAAAGCCATTCAGAAAAGC
AATCTCTTCAGATGTATGGgccattcaaaaattttgatccaGAAAATTTC
TTGACACAAAAGCAGATTGTAAACTTTGTAAAGGCCAACAATAAGTATGA
ATTATACCCTCCTAATTCAGTAAAGAGTGGCAAACCAATTAATTCCTAGT
CAAATGAAATTGTGAGAGTGTGAATCAAAAAACCCCTTGCCTAGATGCAA
AAATGATCAAACATGCATCTAAgaaagccaaaatttcaaaggAGAATGAG
CAAGCTTTGAAATACTAATTTCAACTTTGAGTCTGATCAATATTCATCGA
CAACCATAtgcttcttttcttttcattcgATTTCAATCATTTACTTTCAG
ATCAAATCTTACTGAATTCCATAAGTTGAAACATAATGGAGTGATATTTA
AATCCCTTGGCTATAAACGATCACCAAGAAGGTCAAATGCAgctatcatt
ttcaaaacagATGGTATTAATCAAGCTGGATTGATACAGACCTTCCTTAA
AGTAACCAACTTTTTATAATAAGGGCAGGGATTAAAATTTACTAGATCAA
ttcttttcaaatcatttaATGTATCAAATACTTTAATGTTGTTTCTTAAT
TTTACTTTTAGGTAAATCAAAATGATGGTGTATTTGTCATTGTCTCCTTG
TTGAACaaattaaaagtgatttttctgGAAGTTTGGGTGGTAGAAAGATA
ACTCTTGAACACATTAAGTCTTACAACAGGTATTTCATAAACGGGGTCNC
ATCTGACTGtctcaattatttttcatttttttttaatgaatgaTTGCCTG
ATTATTTTATCCTCAATCCCAGGTAACTAAAGCTATCTCTGCTGCACAAA
AATTACCAATTCATGCATCAAAGATGTTAGATGGCTCTGCAGAGAAATCG
CTATACAACAAGCTTGTCAAAAGAGATGGGTGAGGAATTCTTTTTTCATA
TCTGAAAATTTATGCTTAATTTGTGGAAATTAAATGCTGTAAGTTTCATT
TGTAAATGTAATAACACCTTCTAAGTAGTTtaacaaaaatatgtttttcc
tTTCCATTTACAGTAAAAGCCATTCAGGAAAGCGNGAAAGCTTGTGTGAA
ACCGCTAACGAATGTGAAGAAACTCACAACAAATAAGCtgtttttaattg
attttgtgAATCCTCATGAAAcagactgatttttttttctcagcagCACC
AATGAGTAGGACTAATAATAAAACCAAATATGAAATTTAAATactaaaaa
tcctgaaaactCGCCCAAAAGTGAAGTATTTTGTCAGCCAAAACTAACTC
TTgttaaatcaaattttcttttcaagggATCTTGGGACAAGGGATTTGGG
GACAAGGGATTTTGGGACAAGGGATCAGGGGTATCTTtagcatgaaaaat
atttattccttacatttttaataaattttagaATATTGTAAGATTATTTA
AGAAGCAAATTTTATTCTTATTGCATACTTTCTTGTATATATTTCTACTA
ATTATCTTATGCTGCTACTATGTAAAAGATGTATATTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069625-exon-scaffold_503-1491911889:73339..73359 | TCONS_00069625-exon-scaffold_503-1491911889:73339..73359 | Clytia hemisphaerica | exon |
| TCONS_00069625-exon-scaffold_503-1510915933:73339..73359 | TCONS_00069625-exon-scaffold_503-1510915933:73339..73359 | Clytia hemisphaerica | exon |
| TCONS_00069625-exon-scaffold_503-1575043694:73339..73359 | TCONS_00069625-exon-scaffold_503-1575043694:73339..73359 | Clytia hemisphaerica | exon |
| TCONS_00069625-exon-scaffold_503-1491911889:74561..75279 | TCONS_00069625-exon-scaffold_503-1491911889:74561..75279 | Clytia hemisphaerica | exon |
| TCONS_00069625-exon-scaffold_503-1510915933:74561..75279 | TCONS_00069625-exon-scaffold_503-1510915933:74561..75279 | Clytia hemisphaerica | exon |
| TCONS_00069625-exon-scaffold_503-1575043694:74561..75279 | TCONS_00069625-exon-scaffold_503-1575043694:74561..75279 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_503 | supercontig | scaffold_503:73339..75279 + |
Blast
The following BLAST results are available for this feature:
|
