TCONS_00069898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069898
Unique NameTCONS_00069898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1940

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069898 ID=TCONS_00069898|Name=TCONS_00069898|organism=Clytia hemisphaerica|type=transcript|length=1940bp
tTTCAGAAAGTAAAATATCGAAGGAAAACTTCATTTCACAAAGCTGCCTG
TGGAAACGAGacGTGTACAATTTGTTTGGAAGAGTTTGAACCATCAGAAG
AAATCAAGTTAACTCCTTGCAATCATGGATATCATCCTGACTGTCTAGAG
CATTGGATGCGAGAGAGAAGCAACTGTCCCATGTGTCAAGCTCCTTTGAA
GAAAGACACTTCTGATGAAAATACACCCTTATTGAGAAGCTACACAATCG
ATGTTTAATGTGAAGAATGGTTACTCATTTGGTCATAATTGCCATTTTAG
CTGTTGTTGTTGCTTTTTTCCTTTCACACGACAAAATTACATTCATTTTT
GTTGAGAAAGATGCTGTCTTAAATCAGGAATCCCTGATTCTTTCAGGAGT
GCCGAATGAAATTTCATCTACTGTATTTTGTACCCTTAGTAAACTTGGTA
ACCAAGAATGCAGATTCCAGAACCTTTGTTTTTATAACAATCAATACACT
TACTATTATGGCAAAAACTCTAAAGAAGAAGGATTACAATCAGAATCACC
TTTTCTACTTGATTTATCAAGTGCGGAAATATTTTGACGGTAAAGAAGTG
ACTACTATCTTCATGGAGGGGCGTGAAGATGGGCCTTTTTATGATTTATA
CACCTTATTCATGGAACGGATATTAACAGAGAGAAATCTCACTTCGATGA
CCTGCTTTGAGAATGTCATTATTGGTGTAAGTCAAGAGGTCACATGGTAC
CAATATGGTTTCCATACCCCTCAAGGACCAATCAATGTTGAGAATTATCC
AACAAATGAATTACTTTCTTTCAAAGATGAATTTATGAAGCGATTGAAGA
TGAATATGGATCAATCATTCACTCTATCGAAGGTAGTTATCTTCAAACGC
CAAGACACTAGACGAATTACAAATATGAACGAGTTAGTATTGAAACTATC
AATGAGGTTCAAAGCTGAGGTTACCATATTGGATTTACAAGAGGACACTT
TTGAAGACATCCTAACAGCAGTATCTAATGCCAAGCTTTTGATTGGTGTT
CATGGTGCCCATTTAGTTACCAGTCTCTTTCTCCCTCCTGGTGCCTTATT
AATGGAAATTTATCCTTATGGGATACCTTCGGAGAACTATACACCATACA
AAACTCTTGTATCGCTCATTGGGGTCCAGTATTTAGCCTTTGAAACAGAA
TCAGAAGACTTGTCAACGAATTTTATCGACCGCCCACCAAATCAAGGCGG
TATCGCACACCTACCACCACACCAAAAAGAGGAAATTTTGAACACAAAGA
GAGTTCCCGAACATCTTTGTTGTGACAACCCTTTCTGGTTGTTTAGGATT
TACCAAGACACCGAGGTTGATATCAATAGGTTTTTACCACTTTTACATGG
TAGAATTTCCTAATTCTTTTAATTGTATTGGATAAGATTTTTATCTGTGC
TCCAGAAAACTATCAGATACTAGATTAGGTGAAACTTGAAAGGGCTAATC
TTTGATAAAGCCTTGACAGCAAACATCTGTTGGATTAAAATTgaggtttt
ctttaaaaaatgttacTTGTTAAAAGGTTTCATAGACGAAACATAAAAAA
TCTGATTACCctccttaaattttatcgatatTACCTATAATTGCCTCCCT
CGATTGTAATTCTATCTTCGATCTTCATTTGAATCATGGAGAgagtttta
tattattttccaGTTTAAGTGGGGGGGGGCAGCATGTTTCAGTTCGAATT
ACAGGaaagattcaaaattttagaagatATCTGCAGAAATACGTAAATTT
CTAGTACAGTAAGCCAAATGGGAAGATTCTATTTGGctttttaacaaaat
attttgtaactttttttagtTTATATACAATGTACGcattcaaatcattt
ttttagaagaaatttagcaatttttattttttgagaaatt
Run BLAST on NCBI

transcript from alignment at scaffold_511:322502..326468+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069898 ID=TCONS_00069898|Name=TCONS_00069898|organism=Clytia hemisphaerica|type=transcript|length=3967bp|location=Sequence derived from alignment at scaffold_511:322502..326468+ (Clytia hemisphaerica)
tTTCAGAAAGTAAAATATCGAAGGAAAACTTCATTTCACAAAGCTGCCTG
TGGAAACGAGGTACCATTTGatctttaacatattttattTGTGGTTTTGA
CCTACCTgagcaaaaactttcaaaaccgtAATATTACTGTTTGCCCCATA
CTGAGATGTTTGTGccatctgaaaaaaaatcaagatatgAGATTGGACCC
TGTTTTCGTCATACCATATTGTCATGTCAATTTTAATACAATTTAGCTAC
CttagatatgtttttttttgtcagacGTGTACAATTTGTTTGGAAGAGTT
TGAACCATCAGAAGAAATCAAGTTAACTCCTTGCAATCATGGATATCATC
CTGAGTAAAAtcctttcttttgtttgatAGATCCTATCCATTTGTGaata
ttattcttttttttgagaatcagAGGATGACTTTGTTTACTGTCTTTAAT
TTTTTAGATGGGATAGTTTTGCAATATTGCGCAGTATTACAACCTGTTAT
CAGCTCATTTAAAAATATCTGAAATTATAGCCTATTTTACCCATTAtaat
aaatcaatataaaaattatAAGCTAAAATATAagcttttcaaatttaaaa
atgttcaaCTTTAAAATGGCTTCCATGAGTGTGTAAAAACCagcttaaaa
caaaaaattatggtcctctttcaaatgaaacaaaaaatttcgattttgaa
gattttttgattgtcgatgacgtcatcgatgacgtcattttataagctat
tttcctttatagcttctaaaatattgattttcaggtatatgttgtgatac
tttttggaatcctcggataaatatctttcatttgagccatattTGAGCTT
TCATTTTCAATCCCCAGCAATAGTGATGACGTCACACGGGGACcagtaaa
attctcaaaatttttctcaccactcgtttttgtgatcttatattatctaa
ttgatcatttagaaaacttagtttgcttttaacaactctgtgcacacgaa
ggatgttttcagaacatagtggctctcactagcactacttttatttttgt
gttttccaTTTTTAGCTGTCTAGAGCATTGGATGCGAGAGAGAAGCAACT
GTCCCATGTGTCAAGCTCCTTTGAAGAAAGACACTTCTGATGAAAATACA
CCCTTATTGAGAAGCTACACAATCGATGTTTAATGTGaggattattttat
tttcacagTCATTTATGTTGTGTTTTTCCCGGCTGTGTTGTGTTTTACCT
ACTGTGTTAAAAAAATGCAATTATAGCAAGGAGCTTCTATTTTTGAATCC
TCAAATTCTCTTCTTCATCCATAAGATTTAATCCTCATGATTTGTGATTT
GTGTTTAAGGTGAAGAATGGTTACTCATTTGGTCATAATTGCCATTTTAG
CTGTTGTTGTTGCTTTTTTCCTTTCACACGACAAAATTACATTCATTTTT
GTTGAGAAAGATGCTGTCTTAAATCAGGAATCCCTGATTCTTTCAGGAGT
GCCGAATGAAATTTCATCTANTGTGTTTTTCCCGGCTGTGTTGTGTTTTA
CCTCTGTGTTTAAAAAATGCAATTATAGCAAAGAGCTTCTATTTTTGAAT
CCTCAAATTCTCTTCTTCATCCATAAGATGTAATCCTCATGATTTGTGTA
TATACAAAGTAGTgtttatgaaattgttttttctttgtgtttaaggTGAA
GAATGGTTACTCATTTGGTCATAATTGCCATTTTAGCTGTTGTTGTTGCT
TTTTTCCTTTCACACGACAAAATTACATTCATTTTTGTTGAGAAAGATGC
TGTCTTAAATCAGGAATCCCTGATTCTTTCAGGAGTGCCGAATGAAATTT
CATCTANGCAACTGTCCCATGTGTCAAGCTCCTTTGAAGAAAGACACTTC
TGATGAAAATACACCCTTATTGAGAAGCTACACAATCGATGTTTAATGTG
aggattattttattttcacagTCATTTATGTTGTGTTTTTCCCGGCTGTG
TTGTGTTTTACCTACTGTGTTAAAAAAATGCAATTATAGCAAGGAGCTTC
TATTTTTGAATCCTCAAATTCTCTTCTTCATCCATAAGATTTAATCCTCA
TGATTTGTGATTTGTGTTTAAGGTGAAGAATGGTTACTCATTTGGTCATA
ATTGCCATTTTAGCTGTTGTTGTTGCTTTTTTCCTTTCACACGACAAAAT
TACATTCATTTTTGTTGAGAAAGATGCTGTCTTAAATCAGGAATCCCTGA
TTCTTTCAGGAGTGCCGAATGAAATTTCATCTACTGTATTTTGTACCCTT
AGTAAACTTGGTAACCAAGAATGCAGATTCCAGAACCTTTGTTTTTATAA
CAATCAATACACTTACTATTATGGCAAAAACTCTAAAGAAGAAGGATTAC
AATCAGAATCACCTTTTCTACTTGATTTATCAAGTGTAAGAAACCATAAT
GCAAAATACTTTCAATTTTCTAATAGAACTATGACAAAAAACACGAAATT
TCATTATATTCGTGGCAACACAATTTTGTTTCATCGATTCAATCCTGATA
ACCTGATGCATGTTATCCATGACGATTTACTTCCTTACTTTCACACTAGG
CGGAAATATTTTGACGGTAAAGAAGTGACTACTATCTTCATGGAGGGGCG
TGAAGATGGGCCTTTTTATGATTTATACACCTTATTCATGGAACGGATAT
TAACAGAGAGAAATCTCACTTCGATGACCTGCTTTGAGAATGTCATTATT
GGTGTAAGTCAAGAGGTCACATGGTACCAATATGGTTTCCATACCCCTCA
AGGACCAATCAATGTTGAGAATTATCCAACAAATGAATTACTTTCTTTCA
AAGATGAATTTATGAAGCGATTGAAGATGAATATGGATCAATCATTCACT
CTATCGAAGGTAGTTATCTTCAAACGCCAAGACACTAGACGAATTACAAA
TATGAACGAGTTAGTATTGAAACTATCAATGAGGTTCAAAGCTGAGGTTA
CCATATTGGATTTACAAGAGGACACTTTTGAAGACATCCTAACAGCAGTA
TCTAATGCCAAGCTTTTGATTGGTGTTCATGGTGCCCATTTAGTTACCAG
TCTCTTTCTCCCTCCTGGTGCCTTATTAATGGAAATTTATCCTTATGGGA
TACCTTCGGAGAACTATACACCATACAAAACTCTTGTATCGCTCATTGGG
GTCCAGTATTTAGCCTTTGAAACAGAATCAGAAGACTTGTCAACGAATTT
TATCGACCGCCCACCAAATCAAGGCGGTATCGCACACCTACCACCACACC
AAAAAGAGGAAATTTTGAACACAAAGAGAGTTCCCGAACATCTTTGTTGT
GACAACCCTTTCTGGTTGTTTAGGATTTACCAAGACACCGAGGTTGATAT
CAATAGGTTTTTACCACTTTTACATGGTAGAATTTCCTAATTCTTTTAAT
TGTATTGGATAAGATTTTTATCTGTGCTCCAGAAAACTATCAGATACTAG
ATTAGGTGAAACTTGAAAGGGCTAATCTTTGATAAAGCCTTGACAGCAAA
CATCTGTTGGATTAAAATTgaggttttctttaaaaaatgttacTTGTTAA
AAGGTTTCATAGACGAAACATAAAAAATCTGATTACCctccttaaatttt
atcgatatTACCTATAATTGCCTCCCTCGATTGTAATTCTATCTTCGATC
TTCATTTGAATCATGGAGAgagttttatattattttccaGTTTAAGTGGG
GGGGGGCAGCATGTTTCAGTTCGAATTACAGGaaagattcaaaattttag
aagatATCTGCAGAAATACGTAAATTTCTAGTACAGTAAGCCAAATGGGA
AGATTCTATTTGGctttttaacaaaatattttgtaactttttttagtTTA
TATACAATGTACGcattcaaatcatttttttagaagaaatttagcaattt
ttattttttgagaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043530XLOC_043530Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069898-exon-scaffold_511-1491911889:322502..322561TCONS_00069898-exon-scaffold_511-1491911889:322502..322561Clytia hemisphaericaexon
TCONS_00069898-exon-scaffold_511-1510915933:322502..322561TCONS_00069898-exon-scaffold_511-1510915933:322502..322561Clytia hemisphaericaexon
TCONS_00069898-exon-scaffold_511-1575043694:322502..322561TCONS_00069898-exon-scaffold_511-1575043694:322502..322561Clytia hemisphaericaexon
TCONS_00069898-exon-scaffold_511-1491911889:322776..322855TCONS_00069898-exon-scaffold_511-1491911889:322776..322855Clytia hemisphaericaexon
TCONS_00069898-exon-scaffold_511-1510915933:322776..322855TCONS_00069898-exon-scaffold_511-1510915933:322776..322855Clytia hemisphaericaexon
TCONS_00069898-exon-scaffold_511-1575043694:322776..322855TCONS_00069898-exon-scaffold_511-1575043694:322776..322855Clytia hemisphaericaexon
TCONS_00069898-exon-scaffold_511-1491911889:323567..323685TCONS_00069898-exon-scaffold_511-1491911889:323567..323685Clytia hemisphaericaexon
TCONS_00069898-exon-scaffold_511-1510915933:323567..323685TCONS_00069898-exon-scaffold_511-1510915933:323567..323685Clytia hemisphaericaexon
TCONS_00069898-exon-scaffold_511-1575043694:323567..323685TCONS_00069898-exon-scaffold_511-1575043694:323567..323685Clytia hemisphaericaexon
TCONS_00069898-exon-scaffold_511-1491911889:324624..324936TCONS_00069898-exon-scaffold_511-1491911889:324624..324936Clytia hemisphaericaexon
TCONS_00069898-exon-scaffold_511-1510915933:324624..324936TCONS_00069898-exon-scaffold_511-1510915933:324624..324936Clytia hemisphaericaexon
TCONS_00069898-exon-scaffold_511-1575043694:324624..324936TCONS_00069898-exon-scaffold_511-1575043694:324624..324936Clytia hemisphaericaexon
TCONS_00069898-exon-scaffold_511-1491911889:325101..326468TCONS_00069898-exon-scaffold_511-1491911889:325101..326468Clytia hemisphaericaexon
TCONS_00069898-exon-scaffold_511-1510915933:325101..326468TCONS_00069898-exon-scaffold_511-1510915933:325101..326468Clytia hemisphaericaexon
TCONS_00069898-exon-scaffold_511-1575043694:325101..326468TCONS_00069898-exon-scaffold_511-1575043694:325101..326468Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:322502..326468 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.2183	28.6486	30.5924	35.1805	11.2865	9.42934	11.1244	13.0178	4.70492	6.25664	5.97773	3.09287	3.06928	2.8065	7.09886	7.19361	8.26915	5.46085	3.47364	4.99539	5.73931	5.7414	17.982	17.6966	1.01811	5.16827	4.62361	3.51524	11.151	11.1259
Blast
[Close]
BLAST of TCONS_00069898 vs. Swiss-Prot (Human)
Match: PMGT2 (Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 OS=Homo sapiens GN=POMGNT2 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.895e-54
Identity = 116/294 (39.46%), Postives = 168/294 (57.14%), Query Frame = 1 
Query:  538 NQNHLFY-----LIYQVRKYFD-GKEVTTIFMEGREDGPFYDLYTLFMERILTER----NLTSMTCFENVIIGVSQEVTWYQYGFHTPQGPINVENYPTNELLSFKDEFMKRLKMNMDQS---FTLSKVVIFKRQDTRRITNMNELVLKLSMRFKAEVTILDLQEDTFEDILTAVSNAKLLIGVHGAHLVTSLFLPPGALLMEIYPYGIPSENYTPYKTLVSLIG--VQYLAFETESEDLSTNFIDRPPNQGGIAHLPPHQKEEILNTKRVPEHLCCDNPFWLFRIYQDTEVDI 1374
            N  H+F+     L Y +R++     E    FMEG  +G  +DLY L   +    R     L  + CF +  +G+S+  TWYQYGF  PQGP        NE+  F   FM   K+N+  +        +++F R   R I N  EL+L L+  F+ +   + L++ TF D++  VSNA +L+ +HGA LVT+LFLP GA ++E++PY +  ++YTPYKTL  L G  +QY+A+     + +    +RP +QGGI HL   ++  IL ++ VP HLCC NP WLFRIYQDT+VDI
Sbjct:  163 NLMHVFHDDLLPLFYTLRQFPGLAHEARLFFMEGWGEGAHFDLYKLLSPKQPLLRAQLKTLGRLLCFSHAFVGLSKITTWYQYGFVQPQGPKANILVSGNEIRQFA-RFMTE-KLNVSHTGVPLGEEYILVFSRTQNRLILNEAELLLALAQEFQMKTVTVSLEDHTFADVVRLVSNASMLVSMHGAQLVTTLFLPRGATVVELFPYAVNPDHYTPYKTLAMLPGMDLQYVAWRNMMPENTVTHPERPWDQGGITHLDRAEQARILQSREVPRHLCCRNPEWLFRIYQDTKVDI 454
The following BLAST results are available for this feature:
BLAST of TCONS_00069898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PMGT22.895e-5439.46Protein O-linked-mannose beta-1,4-N-acetylglucosam... [more]
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